Wall clock time and date at job start Tue Mar 31 2020 11:32:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50697 * 120.00593 * 2 1 4 4 N 1.46498 * 109.47756 * 124.99430 * 3 2 1 5 5 N 1.40585 * 127.38834 * 269.96670 * 4 3 2 6 6 N 1.28904 * 106.83462 * 180.02562 * 5 4 3 7 7 N 1.28419 * 110.34048 * 359.72644 * 6 5 4 8 8 C 1.31549 * 110.50151 * 0.45333 * 7 6 5 9 9 S 1.76197 * 126.45163 * 179.81670 * 8 7 6 10 10 C 1.80997 * 100.00063 * 359.69533 * 9 8 7 11 11 C 1.50701 * 109.46995 * 180.02562 * 10 9 8 12 12 C 1.38295 * 119.93297 * 89.99675 * 11 10 9 13 13 C 1.38099 * 120.06865 * 180.25412 * 12 11 10 14 14 C 1.38882 * 119.93206 * 359.47410 * 13 12 11 15 15 O 1.35746 * 120.07145 * 180.25590 * 14 13 12 16 16 C 1.34834 * 117.00340 * 174.73672 * 15 14 13 17 17 H 1.08003 * 119.99155 * 5.05417 * 16 15 14 18 18 C 1.38652 * 120.00189 * 185.05311 * 16 15 14 19 19 N 1.31551 * 120.00092 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99829 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47080 * 90.00176 * 20 18 16 22 22 H 1.48495 * 109.47054 * 209.99795 * 20 18 16 23 23 H 1.48500 * 109.47285 * 330.00378 * 20 18 16 24 24 C 1.38876 * 119.85943 * 0.52538 * 14 13 12 25 25 C 1.38100 * 119.93177 * 359.72571 * 24 14 13 26 26 H 1.07997 * 119.99680 * 0.02562 * 1 2 3 27 27 H 1.08000 * 120.00207 * 180.02562 * 1 2 3 28 28 H 1.08010 * 119.99761 * 179.97438 * 2 1 3 29 29 H 1.09010 * 109.46764 * 4.99429 * 3 2 1 30 30 H 1.08999 * 109.47471 * 244.99962 * 3 2 1 31 31 H 1.08996 * 109.47226 * 60.00194 * 10 9 8 32 32 H 1.09003 * 109.46887 * 299.99389 * 10 9 8 33 33 H 1.08000 * 119.96836 * 359.97438 * 12 11 10 34 34 H 1.08002 * 120.03655 * 179.72759 * 13 12 11 35 35 H 0.97006 * 120.00187 * 180.02562 * 19 18 16 36 36 H 1.07996 * 120.03796 * 179.70626 * 24 14 13 37 37 H 1.07997 * 119.96864 * 179.97438 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 2.9938 1.3319 1.1314 5 7 2.7436 1.8058 2.4312 6 7 3.8312 1.6428 3.1037 7 7 4.7373 1.1110 2.3653 8 6 4.2790 0.9061 1.1493 9 16 5.1679 0.2031 -0.1998 10 6 6.7656 -0.0938 0.5971 11 6 7.7160 -0.7101 -0.3969 12 6 8.5175 0.1008 -1.1796 13 6 9.3855 -0.4608 -2.0951 14 6 9.4610 -1.8418 -2.2217 15 8 10.3171 -2.3970 -3.1170 16 6 10.4202 -3.7414 -3.1129 17 1 9.7774 -4.3303 -2.4753 18 6 11.3514 -4.3678 -3.9272 19 7 12.1346 -3.6504 -4.7034 20 14 11.4947 -6.2303 -3.9209 21 1 10.5836 -6.8003 -4.9457 22 1 12.8937 -6.6201 -4.2306 23 1 11.1206 -6.7511 -2.5815 24 6 8.6548 -2.6534 -1.4343 25 6 7.7850 -2.0856 -0.5243 26 1 -0.5399 0.9353 -0.0004 27 1 -0.5400 -0.9353 0.0004 28 1 1.8500 -0.9354 0.0004 29 1 1.3586 2.1316 0.0895 30 1 2.6214 1.4025 -0.9313 31 1 6.6309 -0.7716 1.4399 32 1 7.1754 0.8516 0.9529 33 1 8.4613 1.1745 -1.0780 34 1 10.0081 0.1730 -2.7092 35 1 12.7858 -4.0887 -5.2734 36 1 8.7077 -3.7275 -1.5337 37 1 7.1575 -2.7161 0.0881 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000729241474.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:32:06 Heat of formation + Delta-G solvation = 134.113216 kcal Electronic energy + Delta-G solvation = -22143.365174 eV Core-core repulsion = 18630.214562 eV Total energy + Delta-G solvation = -3513.150613 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.089 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.98681 -39.22386 -36.91414 -36.67153 -33.29409 -32.66011 -32.35557 -31.27784 -30.34705 -27.85212 -26.47893 -25.16070 -23.72791 -23.18808 -22.15163 -20.90350 -20.58732 -18.32436 -18.14845 -17.20755 -16.99684 -16.78283 -15.57172 -15.12469 -14.99949 -14.77667 -14.52524 -14.39403 -13.80331 -13.80121 -13.61027 -13.20282 -12.87037 -12.76565 -12.56710 -12.32664 -12.13449 -11.78314 -11.61889 -11.26566 -11.15466 -11.11200 -10.95708 -10.78214 -10.66115 -10.59402 -10.53426 -10.16637 -9.50010 -8.96490 -8.38384 -8.10626 -7.36451 -6.60058 -4.17757 0.54082 0.71424 1.37260 1.65394 2.06523 2.08686 2.16222 2.45730 3.05102 3.06386 3.11074 3.84992 3.92318 4.14959 4.41871 4.49449 4.62005 4.85767 4.93673 4.97136 5.02429 5.11219 5.13482 5.18549 5.31967 5.54775 5.65701 5.70668 5.76131 5.95770 6.04680 6.04957 6.23395 6.50241 6.71445 6.87840 7.05037 7.16384 7.27334 7.61872 7.84475 8.26376 8.84989 9.51711 10.56989 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.022927 B = 0.002396 C = 0.002288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1220.996532 B =11681.394557 C =12237.143274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.187 4.187 3 C 0.151 3.849 4 N -0.365 5.365 5 N -0.089 5.089 6 N -0.036 5.036 7 N -0.338 5.338 8 C 0.218 3.782 9 S 0.019 5.981 10 C -0.033 4.033 11 C -0.196 4.196 12 C -0.049 4.049 13 C -0.193 4.193 14 C 0.164 3.836 15 O -0.168 6.168 16 C -0.393 4.393 17 H 0.095 0.905 18 C 0.041 3.959 19 N -0.856 5.856 20 Si 0.943 3.057 21 H -0.272 1.272 22 H -0.276 1.276 23 H -0.266 1.266 24 C -0.236 4.236 25 C -0.044 4.044 26 H 0.104 0.896 27 H 0.109 0.891 28 H 0.122 0.878 29 H 0.112 0.888 30 H 0.116 0.884 31 H 0.099 0.901 32 H 0.100 0.900 33 H 0.116 0.884 34 H 0.121 0.879 35 H 0.273 0.727 36 H 0.130 0.870 37 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.913 6.463 6.074 19.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.207 4.207 3 C 0.030 3.970 4 N -0.164 5.164 5 N -0.076 5.076 6 N -0.031 5.031 7 N -0.194 5.194 8 C -0.165 4.165 9 S 0.248 5.752 10 C -0.180 4.180 11 C -0.200 4.200 12 C -0.069 4.069 13 C -0.213 4.213 14 C 0.107 3.893 15 O -0.070 6.070 16 C -0.469 4.469 17 H 0.113 0.887 18 C -0.164 4.164 19 N -0.490 5.490 20 Si 0.767 3.233 21 H -0.197 1.197 22 H -0.201 1.201 23 H -0.190 1.190 24 C -0.255 4.255 25 C -0.064 4.064 26 H 0.122 0.878 27 H 0.128 0.872 28 H 0.140 0.860 29 H 0.130 0.870 30 H 0.134 0.866 31 H 0.118 0.882 32 H 0.118 0.882 33 H 0.134 0.866 34 H 0.139 0.861 35 H 0.083 0.917 36 H 0.148 0.852 37 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -18.106 6.802 5.999 20.251 hybrid contribution 0.200 -0.965 0.311 1.033 sum -17.907 5.838 6.309 19.863 Atomic orbital electron populations 1.24020 0.95359 1.02914 0.96258 1.23047 0.96496 0.97741 1.03378 1.21132 0.91894 0.98515 0.85506 1.51651 1.09196 1.44342 1.11225 1.82428 1.18717 1.19899 0.86565 1.77841 0.94454 1.08535 1.22304 1.74957 1.24651 1.20680 0.99161 1.28232 0.87723 0.99622 1.00972 1.86444 1.10049 1.72050 1.06606 1.22398 0.90907 1.05368 0.99344 1.18536 1.03429 0.93638 1.04421 1.20523 0.94144 0.98390 0.93821 1.20200 1.04780 0.92388 1.03922 1.19458 0.89369 0.92384 0.88045 1.83973 1.52415 1.23635 1.46988 1.21398 1.20824 0.78356 1.26343 0.88750 1.25344 0.94846 1.00817 0.95433 1.70032 1.19706 1.36274 1.22942 0.85679 0.78226 0.80197 0.79189 1.19732 1.20119 1.19033 1.21143 1.01880 1.00708 1.01795 1.20638 0.96296 0.93385 0.96108 0.87822 0.87234 0.86004 0.86985 0.86619 0.88210 0.88181 0.86608 0.86114 0.91741 0.85192 0.87057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.79 14.32 29.01 0.42 -0.38 16 2 C -0.19 -1.30 9.85 -36.03 -0.35 -1.65 16 3 C 0.15 1.10 6.81 -5.20 -0.04 1.06 16 4 N -0.37 -4.18 3.67 -62.48 -0.23 -4.41 16 5 N -0.09 -1.23 13.93 60.35 0.84 -0.39 16 6 N -0.04 -0.55 13.38 60.35 0.81 0.26 16 7 N -0.34 -5.04 11.57 30.50 0.35 -4.69 16 8 C 0.22 2.77 8.15 -89.17 -0.73 2.04 16 9 S 0.02 0.21 21.77 -107.50 -2.34 -2.13 16 10 C -0.03 -0.41 5.36 36.01 0.19 -0.22 16 11 C -0.20 -2.96 5.14 -104.57 -0.54 -3.50 16 12 C -0.05 -0.77 9.69 -39.61 -0.38 -1.16 16 13 C -0.19 -3.72 9.99 -39.39 -0.39 -4.11 16 14 C 0.16 3.65 6.65 -39.11 -0.26 3.39 16 15 O -0.17 -4.51 9.76 0.05 0.00 -4.51 16 16 C -0.39 -10.36 9.49 30.89 0.29 -10.07 16 17 H 0.10 2.28 5.20 -52.48 -0.27 2.01 16 18 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 19 N -0.86 -23.97 13.67 55.48 0.76 -23.21 16 20 Si 0.94 19.47 29.55 -169.99 -5.02 14.45 16 21 H -0.27 -5.48 7.11 56.52 0.40 -5.07 16 22 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 23 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 24 C -0.24 -4.67 9.17 -39.40 -0.36 -5.03 16 25 C -0.04 -0.72 9.69 -39.61 -0.38 -1.11 16 26 H 0.10 0.42 7.84 -52.49 -0.41 0.01 16 27 H 0.11 0.49 8.06 -52.49 -0.42 0.07 16 28 H 0.12 0.92 8.06 -52.48 -0.42 0.50 16 29 H 0.11 0.61 7.79 -51.92 -0.40 0.20 16 30 H 0.12 0.68 7.85 -51.93 -0.41 0.27 16 31 H 0.10 1.22 8.08 -51.92 -0.42 0.80 16 32 H 0.10 1.21 8.08 -51.91 -0.42 0.79 16 33 H 0.12 1.53 8.06 -52.49 -0.42 1.10 16 34 H 0.12 2.24 8.06 -52.49 -0.42 1.82 16 35 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 36 H 0.13 2.58 5.64 -52.49 -0.30 2.29 16 37 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 LS Contribution 347.51 15.07 5.24 5.24 Total: -1.00 -30.55 347.51 -6.11 -36.66 By element: Atomic # 1 Polarization: 6.35 SS G_CDS: -3.88 Total: 2.47 kcal Atomic # 6 Polarization: -17.12 SS G_CDS: -2.63 Total: -19.75 kcal Atomic # 7 Polarization: -34.97 SS G_CDS: 2.53 Total: -32.44 kcal Atomic # 8 Polarization: -4.51 SS G_CDS: 0.00 Total: -4.51 kcal Atomic # 14 Polarization: 19.47 SS G_CDS: -5.02 Total: 14.45 kcal Atomic # 16 Polarization: 0.21 SS G_CDS: -2.34 Total: -2.13 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -30.55 -6.11 -36.66 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000729241474.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.776 kcal (2) G-P(sol) polarization free energy of solvation -30.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 140.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.663 kcal (6) G-S(sol) free energy of system = (1) + (5) 134.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds