Wall clock time and date at job start Tue Mar 31 2020 11:32:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50697 * 120.00593 * 2 1 4 4 N 1.46498 * 109.47756 * 124.99430 * 3 2 1 5 5 N 1.40585 * 127.38834 * 269.96670 * 4 3 2 6 6 N 1.28904 * 106.83462 * 180.02562 * 5 4 3 7 7 N 1.28419 * 110.34048 * 359.72644 * 6 5 4 8 8 C 1.31549 * 110.50151 * 0.45333 * 7 6 5 9 9 S 1.76197 * 126.45163 * 179.81670 * 8 7 6 10 10 C 1.80997 * 100.00063 * 359.69533 * 9 8 7 11 11 C 1.50701 * 109.46995 * 180.02562 * 10 9 8 12 12 C 1.38295 * 119.93297 * 89.99675 * 11 10 9 13 13 C 1.38099 * 120.06865 * 180.25412 * 12 11 10 14 14 C 1.38882 * 119.93206 * 359.47410 * 13 12 11 15 15 O 1.35746 * 120.07145 * 180.25590 * 14 13 12 16 16 C 1.34834 * 117.00340 * 174.73672 * 15 14 13 17 17 H 1.08003 * 119.99155 * 5.05417 * 16 15 14 18 18 C 1.38652 * 120.00189 * 185.05311 * 16 15 14 19 19 N 1.31551 * 120.00092 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99829 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47080 * 90.00176 * 20 18 16 22 22 H 1.48495 * 109.47054 * 209.99795 * 20 18 16 23 23 H 1.48500 * 109.47285 * 330.00378 * 20 18 16 24 24 C 1.38876 * 119.85943 * 0.52538 * 14 13 12 25 25 C 1.38100 * 119.93177 * 359.72571 * 24 14 13 26 26 H 1.07997 * 119.99680 * 0.02562 * 1 2 3 27 27 H 1.08000 * 120.00207 * 180.02562 * 1 2 3 28 28 H 1.08010 * 119.99761 * 179.97438 * 2 1 3 29 29 H 1.09010 * 109.46764 * 4.99429 * 3 2 1 30 30 H 1.08999 * 109.47471 * 244.99962 * 3 2 1 31 31 H 1.08996 * 109.47226 * 60.00194 * 10 9 8 32 32 H 1.09003 * 109.46887 * 299.99389 * 10 9 8 33 33 H 1.08000 * 119.96836 * 359.97438 * 12 11 10 34 34 H 1.08002 * 120.03655 * 179.72759 * 13 12 11 35 35 H 0.97006 * 120.00187 * 180.02562 * 19 18 16 36 36 H 1.07996 * 120.03796 * 179.70626 * 24 14 13 37 37 H 1.07997 * 119.96864 * 179.97438 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 2.9938 1.3319 1.1314 5 7 2.7436 1.8058 2.4312 6 7 3.8312 1.6428 3.1037 7 7 4.7373 1.1110 2.3653 8 6 4.2790 0.9061 1.1493 9 16 5.1679 0.2031 -0.1998 10 6 6.7656 -0.0938 0.5971 11 6 7.7160 -0.7101 -0.3969 12 6 8.5175 0.1008 -1.1796 13 6 9.3855 -0.4608 -2.0951 14 6 9.4610 -1.8418 -2.2217 15 8 10.3171 -2.3970 -3.1170 16 6 10.4202 -3.7414 -3.1129 17 1 9.7774 -4.3303 -2.4753 18 6 11.3514 -4.3678 -3.9272 19 7 12.1346 -3.6504 -4.7034 20 14 11.4947 -6.2303 -3.9209 21 1 10.5836 -6.8003 -4.9457 22 1 12.8937 -6.6201 -4.2306 23 1 11.1206 -6.7511 -2.5815 24 6 8.6548 -2.6534 -1.4343 25 6 7.7850 -2.0856 -0.5243 26 1 -0.5399 0.9353 -0.0004 27 1 -0.5400 -0.9353 0.0004 28 1 1.8500 -0.9354 0.0004 29 1 1.3586 2.1316 0.0895 30 1 2.6214 1.4025 -0.9313 31 1 6.6309 -0.7716 1.4399 32 1 7.1754 0.8516 0.9529 33 1 8.4613 1.1745 -1.0780 34 1 10.0081 0.1730 -2.7092 35 1 12.7858 -4.0887 -5.2734 36 1 8.7077 -3.7275 -1.5337 37 1 7.1575 -2.7161 0.0881 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000729241474.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:32:05 Heat of formation + Delta-G solvation = 116.113012 kcal Electronic energy + Delta-G solvation = -22144.145722 eV Core-core repulsion = 18630.214562 eV Total energy + Delta-G solvation = -3513.931160 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.089 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.98606 -40.81497 -38.49048 -37.37477 -34.42661 -33.99268 -33.44124 -32.69755 -31.81740 -28.57793 -27.98757 -26.78613 -24.68742 -24.18296 -23.66070 -22.26039 -21.21490 -19.87815 -19.25050 -18.77918 -18.00364 -17.69252 -16.49878 -16.40502 -16.24451 -16.13430 -15.92277 -15.48662 -15.22123 -15.01198 -14.66439 -14.46676 -14.34918 -13.78845 -13.71056 -13.43495 -13.28781 -13.00829 -12.69771 -12.62077 -12.45242 -12.37477 -12.21504 -12.11858 -12.06199 -11.76278 -11.48946 -11.19131 -10.78368 -10.64021 -9.81693 -9.05431 -8.95327 -8.47741 -6.15270 -0.45958 -0.25146 0.45471 0.58939 0.72848 1.03154 1.15848 1.37433 1.46750 1.53696 1.54432 2.17929 2.83457 3.13467 3.17859 3.47983 3.64279 3.67562 3.77352 3.90715 4.03104 4.14529 4.17505 4.28725 4.30354 4.51887 4.56420 4.66482 4.76714 4.88072 4.97998 5.03371 5.13957 5.26040 5.51477 5.52582 5.57815 5.68732 5.69366 6.02062 6.14444 6.97241 7.23577 7.75820 8.74882 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.022927 B = 0.002396 C = 0.002288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1220.996532 B =11681.394557 C =12237.143274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.209 4.209 3 C 0.141 3.859 4 N -0.353 5.353 5 N -0.096 5.096 6 N -0.060 5.060 7 N -0.358 5.358 8 C 0.211 3.789 9 S 0.064 5.936 10 C -0.042 4.042 11 C -0.165 4.165 12 C -0.041 4.041 13 C -0.204 4.204 14 C 0.125 3.875 15 O -0.226 6.226 16 C -0.413 4.413 17 H 0.105 0.895 18 C -0.021 4.021 19 N -0.918 5.918 20 Si 1.017 2.983 21 H -0.263 1.263 22 H -0.273 1.273 23 H -0.252 1.252 24 C -0.243 4.243 25 C -0.043 4.043 26 H 0.120 0.880 27 H 0.118 0.882 28 H 0.112 0.888 29 H 0.133 0.867 30 H 0.132 0.868 31 H 0.110 0.890 32 H 0.113 0.887 33 H 0.153 0.847 34 H 0.118 0.882 35 H 0.273 0.727 36 H 0.123 0.877 37 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.067 6.961 7.585 23.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.229 4.229 3 C 0.021 3.979 4 N -0.153 5.153 5 N -0.083 5.083 6 N -0.056 5.056 7 N -0.215 5.215 8 C -0.173 4.173 9 S 0.293 5.707 10 C -0.190 4.190 11 C -0.169 4.169 12 C -0.061 4.061 13 C -0.223 4.223 14 C 0.073 3.927 15 O -0.132 6.132 16 C -0.489 4.489 17 H 0.122 0.878 18 C -0.219 4.219 19 N -0.556 5.556 20 Si 0.836 3.164 21 H -0.188 1.188 22 H -0.198 1.198 23 H -0.176 1.176 24 C -0.262 4.262 25 C -0.063 4.063 26 H 0.138 0.862 27 H 0.136 0.864 28 H 0.130 0.870 29 H 0.151 0.849 30 H 0.150 0.850 31 H 0.129 0.871 32 H 0.132 0.868 33 H 0.171 0.829 34 H 0.136 0.864 35 H 0.082 0.918 36 H 0.140 0.860 37 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -21.310 7.322 7.535 23.759 hybrid contribution 0.750 -0.810 0.079 1.107 sum -20.560 6.511 7.614 22.871 Atomic orbital electron populations 1.24275 0.94940 1.04172 0.93581 1.22981 0.97024 0.97108 1.05767 1.21585 0.92058 0.99628 0.84588 1.51923 1.09256 1.42860 1.11223 1.82346 1.18467 1.19943 0.87566 1.77825 0.94978 1.09665 1.23123 1.74866 1.25320 1.21306 1.00004 1.28295 0.88411 0.99855 1.00725 1.86296 1.08170 1.71787 1.04490 1.22401 0.91436 1.06209 0.98928 1.18849 1.02168 0.93179 1.02663 1.20915 0.92573 1.00405 0.92184 1.20449 1.05607 0.91374 1.04858 1.20025 0.89864 0.93905 0.88856 1.83948 1.55406 1.23832 1.50044 1.21847 1.21320 0.78942 1.26781 0.87759 1.26567 0.94327 1.06070 0.94927 1.70174 1.21678 1.38464 1.25247 0.84606 0.78284 0.73653 0.79844 1.18780 1.19822 1.17568 1.21241 1.02284 1.00373 1.02331 1.20972 0.95548 0.94478 0.95263 0.86231 0.86363 0.86961 0.84918 0.85048 0.87128 0.86836 0.82923 0.86408 0.91788 0.85958 0.83804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.99 14.32 67.78 0.97 -0.02 16 2 C -0.21 -2.30 9.85 25.65 0.25 -2.04 16 3 C 0.14 1.59 6.81 85.63 0.58 2.17 16 4 N -0.35 -7.07 3.67 -351.59 -1.29 -8.36 16 5 N -0.10 -2.44 13.93 37.02 0.52 -1.93 16 6 N -0.06 -1.75 13.38 37.02 0.50 -1.26 16 7 N -0.36 -9.78 11.57 -57.41 -0.66 -10.45 16 8 C 0.21 4.70 8.15 179.84 1.47 6.17 16 9 S 0.06 1.21 21.77 -56.49 -1.23 -0.02 16 10 C -0.04 -0.88 5.36 71.24 0.38 -0.50 16 11 C -0.17 -4.43 5.14 -19.83 -0.10 -4.53 16 12 C -0.04 -1.20 9.69 22.25 0.22 -0.98 16 13 C -0.20 -7.85 9.99 22.39 0.22 -7.63 16 14 C 0.13 5.79 6.65 22.58 0.15 5.94 16 15 O -0.23 -12.95 9.76 -22.74 -0.22 -13.17 16 16 C -0.41 -22.95 9.49 67.92 0.64 -22.31 16 17 H 0.11 5.26 5.20 -2.91 -0.02 5.25 16 18 C -0.02 -1.14 5.49 84.83 0.47 -0.68 16 19 N -0.92 -54.68 13.67 21.61 0.30 -54.38 16 20 Si 1.02 41.22 29.55 68.60 2.03 43.25 16 21 H -0.26 -10.12 7.11 99.48 0.71 -9.41 16 22 H -0.27 -10.77 7.11 99.48 0.71 -10.06 16 23 H -0.25 -9.45 7.11 99.48 0.71 -8.75 16 24 C -0.24 -9.62 9.17 22.39 0.21 -9.42 16 25 C -0.04 -1.29 9.69 22.25 0.22 -1.08 16 26 H 0.12 0.51 7.84 -2.91 -0.02 0.49 16 27 H 0.12 0.69 8.06 -2.91 -0.02 0.67 16 28 H 0.11 1.44 8.06 -2.91 -0.02 1.42 16 29 H 0.13 0.95 7.79 -2.38 -0.02 0.94 16 30 H 0.13 1.06 7.85 -2.39 -0.02 1.04 16 31 H 0.11 2.22 8.08 -2.40 -0.02 2.20 16 32 H 0.11 2.21 8.08 -2.39 -0.02 2.19 16 33 H 0.15 3.37 8.06 -2.91 -0.02 3.34 16 34 H 0.12 4.52 8.06 -2.91 -0.02 4.49 16 35 H 0.27 14.91 8.31 -92.70 -0.77 14.14 16 36 H 0.12 4.96 5.64 -2.91 -0.02 4.94 16 37 H 0.14 3.44 8.06 -2.91 -0.02 3.41 16 Total: -1.00 -71.63 347.51 6.70 -64.93 By element: Atomic # 1 Polarization: 15.20 SS G_CDS: 1.10 Total: 16.30 kcal Atomic # 6 Polarization: -40.58 SS G_CDS: 5.67 Total: -34.90 kcal Atomic # 7 Polarization: -75.73 SS G_CDS: -0.65 Total: -76.38 kcal Atomic # 8 Polarization: -12.95 SS G_CDS: -0.22 Total: -13.17 kcal Atomic # 14 Polarization: 41.22 SS G_CDS: 2.03 Total: 43.25 kcal Atomic # 16 Polarization: 1.21 SS G_CDS: -1.23 Total: -0.02 kcal Total: -71.63 6.70 -64.93 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000729241474.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 181.043 kcal (2) G-P(sol) polarization free energy of solvation -71.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.930 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds