Wall clock time and date at job start Tue Mar 31 2020 12:50:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86800 * 119.99960 * 2 1 4 4 H 1.48496 * 109.46928 * 275.99648 * 3 2 1 5 5 H 1.48511 * 109.47052 * 35.99068 * 3 2 1 6 6 H 1.48494 * 109.47183 * 155.99216 * 3 2 1 7 7 C 1.38944 * 120.00222 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00280 * 338.60547 * 7 2 1 9 9 N 1.37099 * 120.00123 * 158.60338 * 7 2 1 10 10 C 1.46504 * 119.99904 * 322.20514 * 9 7 2 11 11 C 1.50696 * 109.47411 * 263.24091 * 10 9 7 12 12 O 1.20831 * 119.99976 * 0.02562 * 11 10 9 13 13 O 1.34223 * 119.99912 * 179.97438 * 11 10 9 14 14 C 1.34774 * 119.99934 * 142.20786 * 9 7 2 15 15 O 1.21289 * 120.00149 * 359.72607 * 14 9 7 16 16 C 1.50707 * 119.99569 * 180.02562 * 14 9 7 17 17 C 1.53006 * 109.46883 * 179.72174 * 16 14 9 18 18 C 1.50696 * 109.47199 * 179.97438 * 17 16 14 19 19 N 1.29906 * 124.85328 * 89.69668 * 18 17 16 20 20 C 1.36060 * 108.79458 * 179.89817 * 19 18 17 21 21 C 1.39589 * 133.80058 * 180.10010 * 20 19 18 22 22 C 1.37684 * 119.72944 * 180.26628 * 21 20 19 23 23 C 1.38716 * 120.42154 * 0.03867 * 22 21 20 24 24 C 1.37907 * 120.47788 * 359.95925 * 23 22 21 25 25 C 1.38677 * 119.87383 * 0.02562 * 24 23 22 26 26 O 1.34237 * 124.85695 * 270.00544 * 18 17 16 27 27 H 0.96999 * 120.00273 * 359.97438 * 1 2 3 28 28 H 1.09004 * 109.46987 * 23.24665 * 10 9 7 29 29 H 1.09004 * 109.47083 * 143.23978 * 10 9 7 30 30 H 0.96703 * 116.99911 * 180.02562 * 13 11 10 31 31 H 1.08994 * 109.47008 * 299.72528 * 16 14 9 32 32 H 1.09002 * 109.47299 * 59.72614 * 16 14 9 33 33 H 1.08995 * 109.47308 * 300.00468 * 17 16 14 34 34 H 1.09002 * 109.46795 * 60.00131 * 17 16 14 35 35 H 1.08006 * 120.13780 * 0.30304 * 21 20 19 36 36 H 1.08000 * 119.78833 * 180.02562 * 22 21 20 37 37 H 1.08001 * 119.76087 * 179.97438 * 23 22 21 38 38 H 1.07995 * 120.06840 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.3689 2.1195 -1.3924 5 1 1.5145 2.6129 0.8228 6 1 3.6031 1.4070 0.5696 7 6 2.0089 -1.2033 0.0005 8 1 1.5247 -2.1063 0.3421 9 7 3.3090 -1.2444 -0.4326 10 6 3.7280 -0.4232 -1.5712 11 6 3.7008 -1.2551 -2.8275 12 8 3.3653 -2.4148 -2.7771 13 8 4.0482 -0.7074 -4.0027 14 6 4.2015 -2.0402 0.1891 15 8 3.8558 -2.7162 1.1348 16 6 5.6308 -2.0848 -0.2868 17 6 6.4294 -3.0536 0.5878 18 6 7.8585 -3.0988 0.1117 19 7 8.8068 -2.3179 0.5342 20 6 9.9610 -2.6422 -0.1092 21 6 11.2670 -2.1522 -0.0565 22 6 12.2370 -2.7061 -0.8615 23 6 11.9242 -3.7465 -1.7240 24 6 10.6382 -4.2406 -1.7865 25 6 9.6487 -3.6948 -0.9827 26 8 8.3322 -3.9477 -0.8140 27 1 -0.4850 0.8400 0.0004 28 1 3.0477 0.4215 -1.6799 29 1 4.7398 -0.0552 -1.4010 30 1 4.0148 -1.2804 -4.7810 31 1 5.6585 -2.4231 -1.3225 32 1 6.0680 -1.0887 -0.2181 33 1 6.4016 -2.7153 1.6236 34 1 5.9923 -4.0497 0.5191 35 1 11.5157 -1.3423 0.6133 36 1 13.2479 -2.3281 -0.8212 37 1 12.6934 -4.1728 -2.3509 38 1 10.4021 -5.0510 -2.4601 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000739077803.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:50:31 Heat of formation + Delta-G solvation = -69.230927 kcal Electronic energy + Delta-G solvation = -26019.698213 eV Core-core repulsion = 22022.684315 eV Total energy + Delta-G solvation = -3997.013898 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.109 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.36049 -40.09778 -38.71579 -38.19367 -35.85567 -35.16378 -34.85520 -33.28801 -32.17704 -30.88866 -29.48726 -28.13184 -26.45124 -24.15178 -23.26125 -22.28510 -21.81902 -21.35107 -18.95971 -18.22935 -17.84145 -17.43819 -17.36767 -16.85330 -16.67712 -16.14243 -15.70777 -15.35307 -15.06360 -14.88554 -14.37401 -14.04694 -13.91061 -13.47254 -13.10465 -12.85949 -12.72891 -12.57962 -12.53198 -12.33024 -12.18322 -11.81915 -11.72031 -11.36027 -11.24336 -11.09072 -10.90324 -10.69556 -10.57152 -10.19513 -10.03775 -9.25665 -9.04450 -8.81958 -8.58104 -8.01918 -6.50540 -4.11233 0.48549 0.99295 2.26254 2.37445 2.59177 2.90707 3.05465 3.14687 3.18782 3.42249 3.62599 3.70602 4.00328 4.22000 4.32541 4.59260 4.81713 4.85325 4.92563 4.95189 5.03909 5.15598 5.20435 5.29689 5.34301 5.59767 5.60906 5.67450 5.76979 5.81742 5.91741 6.00978 6.04760 6.09055 6.16527 6.40850 6.79984 7.34709 7.53120 8.11468 8.24495 8.33429 8.79207 9.13996 9.51788 10.61048 Molecular weight = 318.11amu Principal moments of inertia in cm(-1) A = 0.019107 B = 0.003336 C = 0.003221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1465.093133 B = 8390.843765 C = 8691.374479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.855 5.855 2 C 0.060 3.940 3 Si 0.860 3.140 4 H -0.271 1.271 5 H -0.279 1.279 6 H -0.257 1.257 7 C -0.316 4.316 8 H 0.110 0.890 9 N -0.449 5.449 10 C 0.096 3.904 11 C 0.456 3.544 12 O -0.493 6.493 13 O -0.525 6.525 14 C 0.486 3.514 15 O -0.546 6.546 16 C -0.140 4.140 17 C -0.014 4.014 18 C 0.268 3.732 19 N -0.482 5.482 20 C 0.025 3.975 21 C -0.064 4.064 22 C -0.122 4.122 23 C -0.100 4.100 24 C -0.091 4.091 25 C 0.002 3.998 26 O -0.211 6.211 27 H 0.276 0.724 28 H 0.116 0.884 29 H 0.105 0.895 30 H 0.402 0.598 31 H 0.085 0.915 32 H 0.093 0.907 33 H 0.122 0.878 34 H 0.108 0.892 35 H 0.135 0.865 36 H 0.136 0.864 37 H 0.139 0.861 38 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.636 -1.781 -6.643 22.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.490 5.490 2 C -0.147 4.147 3 Si 0.686 3.314 4 H -0.198 1.198 5 H -0.205 1.205 6 H -0.181 1.181 7 C -0.443 4.443 8 H 0.128 0.872 9 N -0.171 5.171 10 C -0.030 4.030 11 C 0.295 3.705 12 O -0.378 6.378 13 O -0.337 6.337 14 C 0.275 3.725 15 O -0.426 6.426 16 C -0.182 4.182 17 C -0.052 4.052 18 C 0.057 3.943 19 N -0.211 5.211 20 C -0.087 4.087 21 C -0.083 4.083 22 C -0.141 4.141 23 C -0.118 4.118 24 C -0.110 4.110 25 C -0.048 4.048 26 O -0.103 6.103 27 H 0.087 0.913 28 H 0.133 0.867 29 H 0.123 0.877 30 H 0.260 0.740 31 H 0.103 0.897 32 H 0.112 0.888 33 H 0.140 0.860 34 H 0.126 0.874 35 H 0.153 0.847 36 H 0.154 0.846 37 H 0.156 0.844 38 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 21.091 -1.646 -5.314 21.813 hybrid contribution 0.282 0.118 -1.312 1.347 sum 21.373 -1.528 -6.626 22.429 Atomic orbital electron populations 1.69745 1.06180 1.28134 1.44958 1.25390 0.95239 0.98197 0.95857 0.87189 0.81752 0.84103 0.78335 1.19771 1.20475 1.18064 1.19067 0.84504 0.96998 1.43706 0.87214 1.43346 1.10271 1.40282 1.23231 1.21660 1.03396 0.94760 0.83202 1.24627 0.73060 0.87679 0.85116 1.90723 1.42309 1.18414 1.86400 1.84578 1.81525 1.48897 1.18680 1.19877 0.85601 0.83231 0.83813 1.90593 1.79807 1.43432 1.28748 1.21708 0.95076 1.00780 1.00618 1.20065 0.80656 1.03254 1.01229 1.26780 0.97959 0.84257 0.85353 1.70727 0.98121 1.25619 1.26657 1.19988 0.94549 0.97092 0.97071 1.20335 0.88879 0.99778 0.99278 1.21030 0.99447 0.97097 0.96563 1.20986 0.95040 0.96768 0.99014 1.19901 0.90217 1.01493 0.99369 1.20398 0.83056 0.99765 1.01603 1.84556 1.21491 1.52718 1.51496 0.91311 0.86670 0.87693 0.74034 0.89657 0.88824 0.85987 0.87398 0.84675 0.84650 0.84359 0.84769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.09 13.96 55.50 0.77 -23.32 16 2 C 0.06 1.60 5.28 -17.47 -0.09 1.51 16 3 Si 0.86 18.96 24.97 -169.99 -4.25 14.72 16 4 H -0.27 -5.49 6.72 56.52 0.38 -5.11 16 5 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 6 H -0.26 -5.44 7.11 56.52 0.40 -5.04 16 7 C -0.32 -8.73 9.36 -14.93 -0.14 -8.87 16 8 H 0.11 3.45 7.92 -52.48 -0.42 3.04 16 9 N -0.45 -10.55 1.74 -116.09 -0.20 -10.75 16 10 C 0.10 1.86 4.33 -5.19 -0.02 1.83 16 11 C 0.46 8.40 7.64 36.00 0.27 8.68 16 12 O -0.49 -10.74 17.00 -18.75 -0.32 -11.06 16 13 O -0.53 -7.39 13.42 -39.24 -0.53 -7.92 16 14 C 0.49 10.80 7.38 -10.98 -0.08 10.72 16 15 O -0.55 -13.86 15.86 5.55 0.09 -13.77 16 16 C -0.14 -2.34 4.30 -27.88 -0.12 -2.46 16 17 C -0.01 -0.21 5.13 -27.88 -0.14 -0.35 16 18 C 0.27 4.06 7.49 -13.09 -0.10 3.96 16 19 N -0.48 -7.57 11.34 -8.70 -0.10 -7.67 16 20 C 0.02 0.35 7.24 -84.71 -0.61 -0.27 16 21 C -0.06 -0.68 10.10 -39.28 -0.40 -1.08 16 22 C -0.12 -0.97 10.02 -39.61 -0.40 -1.37 16 23 C -0.10 -0.77 10.03 -39.53 -0.40 -1.17 16 24 C -0.09 -0.91 10.06 -39.54 -0.40 -1.31 16 25 C 0.00 0.03 7.43 -38.64 -0.29 -0.26 16 26 O -0.21 -3.17 10.77 3.62 0.04 -3.13 16 27 H 0.28 7.15 8.31 -40.82 -0.34 6.81 16 28 H 0.12 2.31 3.62 -51.93 -0.19 2.12 16 29 H 0.11 1.62 6.72 -51.93 -0.35 1.27 16 30 H 0.40 3.80 9.10 45.56 0.41 4.21 16 31 H 0.08 1.37 7.45 -51.93 -0.39 0.98 16 32 H 0.09 1.39 7.41 -51.93 -0.38 1.00 16 33 H 0.12 1.83 8.10 -51.93 -0.42 1.41 16 34 H 0.11 1.61 8.10 -51.93 -0.42 1.19 16 35 H 0.14 1.22 8.06 -52.48 -0.42 0.80 16 36 H 0.14 0.66 8.06 -52.49 -0.42 0.24 16 37 H 0.14 0.62 8.06 -52.49 -0.42 0.20 16 38 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 LS Contribution 334.72 15.07 5.04 5.04 Total: -1.00 -34.98 334.72 -5.35 -40.33 By element: Atomic # 1 Polarization: 10.96 SS G_CDS: -3.00 Total: 7.96 kcal Atomic # 6 Polarization: 12.47 SS G_CDS: -2.91 Total: 9.56 kcal Atomic # 7 Polarization: -42.21 SS G_CDS: 0.47 Total: -41.74 kcal Atomic # 8 Polarization: -35.17 SS G_CDS: -0.72 Total: -35.88 kcal Atomic # 14 Polarization: 18.96 SS G_CDS: -4.25 Total: 14.72 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -34.98 -5.35 -40.33 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739077803.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.897 kcal (2) G-P(sol) polarization free energy of solvation -34.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds