Wall clock time and date at job start Tue Mar 31 2020 12:50:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86800 * 119.99960 * 2 1 4 4 H 1.48496 * 109.46928 * 275.99648 * 3 2 1 5 5 H 1.48511 * 109.47052 * 35.99068 * 3 2 1 6 6 H 1.48494 * 109.47183 * 155.99216 * 3 2 1 7 7 C 1.38944 * 120.00222 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00280 * 338.60547 * 7 2 1 9 9 N 1.37099 * 120.00123 * 158.60338 * 7 2 1 10 10 C 1.46504 * 119.99904 * 322.20514 * 9 7 2 11 11 C 1.50696 * 109.47411 * 263.24091 * 10 9 7 12 12 O 1.20831 * 119.99976 * 0.02562 * 11 10 9 13 13 O 1.34223 * 119.99912 * 179.97438 * 11 10 9 14 14 C 1.34774 * 119.99934 * 142.20786 * 9 7 2 15 15 O 1.21289 * 120.00149 * 359.72607 * 14 9 7 16 16 C 1.50707 * 119.99569 * 180.02562 * 14 9 7 17 17 C 1.53006 * 109.46883 * 179.72174 * 16 14 9 18 18 C 1.50696 * 109.47199 * 179.97438 * 17 16 14 19 19 N 1.29906 * 124.85328 * 89.69668 * 18 17 16 20 20 C 1.36060 * 108.79458 * 179.89817 * 19 18 17 21 21 C 1.39589 * 133.80058 * 180.10010 * 20 19 18 22 22 C 1.37684 * 119.72944 * 180.26628 * 21 20 19 23 23 C 1.38716 * 120.42154 * 0.03867 * 22 21 20 24 24 C 1.37907 * 120.47788 * 359.95925 * 23 22 21 25 25 C 1.38677 * 119.87383 * 0.02562 * 24 23 22 26 26 O 1.34237 * 124.85695 * 270.00544 * 18 17 16 27 27 H 0.96999 * 120.00273 * 359.97438 * 1 2 3 28 28 H 1.09004 * 109.46987 * 23.24665 * 10 9 7 29 29 H 1.09004 * 109.47083 * 143.23978 * 10 9 7 30 30 H 0.96703 * 116.99911 * 180.02562 * 13 11 10 31 31 H 1.08994 * 109.47008 * 299.72528 * 16 14 9 32 32 H 1.09002 * 109.47299 * 59.72614 * 16 14 9 33 33 H 1.08995 * 109.47308 * 300.00468 * 17 16 14 34 34 H 1.09002 * 109.46795 * 60.00131 * 17 16 14 35 35 H 1.08006 * 120.13780 * 0.30304 * 21 20 19 36 36 H 1.08000 * 119.78833 * 180.02562 * 22 21 20 37 37 H 1.08001 * 119.76087 * 179.97438 * 23 22 21 38 38 H 1.07995 * 120.06840 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.3689 2.1195 -1.3924 5 1 1.5145 2.6129 0.8228 6 1 3.6031 1.4070 0.5696 7 6 2.0089 -1.2033 0.0005 8 1 1.5247 -2.1063 0.3421 9 7 3.3090 -1.2444 -0.4326 10 6 3.7280 -0.4232 -1.5712 11 6 3.7008 -1.2551 -2.8275 12 8 3.3653 -2.4148 -2.7771 13 8 4.0482 -0.7074 -4.0027 14 6 4.2015 -2.0402 0.1891 15 8 3.8558 -2.7162 1.1348 16 6 5.6308 -2.0848 -0.2868 17 6 6.4294 -3.0536 0.5878 18 6 7.8585 -3.0988 0.1117 19 7 8.8068 -2.3179 0.5342 20 6 9.9610 -2.6422 -0.1092 21 6 11.2670 -2.1522 -0.0565 22 6 12.2370 -2.7061 -0.8615 23 6 11.9242 -3.7465 -1.7240 24 6 10.6382 -4.2406 -1.7865 25 6 9.6487 -3.6948 -0.9827 26 8 8.3322 -3.9477 -0.8140 27 1 -0.4850 0.8400 0.0004 28 1 3.0477 0.4215 -1.6799 29 1 4.7398 -0.0552 -1.4010 30 1 4.0148 -1.2804 -4.7810 31 1 5.6585 -2.4231 -1.3225 32 1 6.0680 -1.0887 -0.2181 33 1 6.4016 -2.7153 1.6236 34 1 5.9923 -4.0497 0.5191 35 1 11.5157 -1.3423 0.6133 36 1 13.2479 -2.3281 -0.8212 37 1 12.6934 -4.1728 -2.3509 38 1 10.4021 -5.0510 -2.4601 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000739077803.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:50:30 Heat of formation + Delta-G solvation = -97.012546 kcal Electronic energy + Delta-G solvation = -26020.902915 eV Core-core repulsion = 22022.684315 eV Total energy + Delta-G solvation = -3998.218600 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.109 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -44.33333 -41.63721 -40.33396 -38.98411 -37.32033 -36.72743 -36.06302 -34.62760 -34.08856 -31.63791 -30.50675 -29.75093 -27.96729 -25.71633 -24.14039 -23.30692 -23.13034 -22.45834 -20.67592 -19.27166 -19.22608 -19.06521 -18.51754 -18.12191 -17.88281 -17.56622 -17.17404 -16.63413 -16.41047 -16.29145 -15.63024 -15.16663 -14.97821 -14.86077 -14.58225 -14.32960 -14.11439 -13.97652 -13.75580 -13.50819 -13.34451 -13.14620 -12.85642 -12.61002 -12.55240 -12.43913 -12.30152 -12.23447 -11.96127 -11.71754 -11.53556 -11.13145 -10.59751 -9.94427 -9.82436 -9.47798 -8.53980 -6.22194 -0.36660 0.21322 1.12793 1.19301 1.28469 1.34196 1.40272 1.47409 1.61234 2.05694 2.17313 2.48160 2.65301 2.75559 2.96537 3.47047 3.58249 3.78615 3.81435 3.90885 3.98294 4.07509 4.17502 4.21501 4.30060 4.34521 4.42547 4.46280 4.69350 4.77713 4.91619 5.06719 5.18942 5.33400 5.38003 5.42402 5.57985 5.72461 6.00710 6.38385 6.51921 6.82628 6.97003 7.15006 7.66741 8.63114 Molecular weight = 318.11amu Principal moments of inertia in cm(-1) A = 0.019107 B = 0.003336 C = 0.003221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1465.093133 B = 8390.843765 C = 8691.374479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.011 3.989 3 Si 0.933 3.067 4 H -0.231 1.231 5 H -0.282 1.282 6 H -0.239 1.239 7 C -0.337 4.337 8 H 0.043 0.957 9 N -0.461 5.461 10 C 0.087 3.913 11 C 0.467 3.533 12 O -0.537 6.537 13 O -0.504 6.504 14 C 0.479 3.521 15 O -0.592 6.592 16 C -0.124 4.124 17 C -0.005 4.005 18 C 0.254 3.746 19 N -0.496 5.496 20 C -0.011 4.011 21 C -0.077 4.077 22 C -0.108 4.108 23 C -0.081 4.081 24 C -0.103 4.103 25 C -0.024 4.024 26 O -0.225 6.225 27 H 0.283 0.717 28 H 0.114 0.886 29 H 0.154 0.846 30 H 0.426 0.574 31 H 0.096 0.904 32 H 0.122 0.878 33 H 0.119 0.881 34 H 0.101 0.899 35 H 0.146 0.854 36 H 0.176 0.824 37 H 0.181 0.819 38 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.404 0.267 -8.929 27.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.192 4.192 3 Si 0.753 3.247 4 H -0.155 1.155 5 H -0.208 1.208 6 H -0.162 1.162 7 C -0.464 4.464 8 H 0.061 0.939 9 N -0.183 5.183 10 C -0.038 4.038 11 C 0.308 3.692 12 O -0.426 6.426 13 O -0.317 6.317 14 C 0.270 3.730 15 O -0.475 6.475 16 C -0.164 4.164 17 C -0.044 4.044 18 C 0.043 3.957 19 N -0.227 5.227 20 C -0.122 4.122 21 C -0.096 4.096 22 C -0.127 4.127 23 C -0.098 4.098 24 C -0.122 4.122 25 C -0.073 4.073 26 O -0.117 6.117 27 H 0.093 0.907 28 H 0.132 0.868 29 H 0.171 0.829 30 H 0.288 0.712 31 H 0.114 0.886 32 H 0.140 0.860 33 H 0.137 0.863 34 H 0.119 0.881 35 H 0.164 0.836 36 H 0.193 0.807 37 H 0.199 0.801 38 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 25.892 0.407 -7.668 27.007 hybrid contribution -1.053 -0.630 -0.701 1.413 sum 24.839 -0.222 -8.370 26.212 Atomic orbital electron populations 1.69872 1.08366 1.29719 1.46391 1.26256 0.95979 1.02362 0.94617 0.86060 0.80501 0.77604 0.80542 1.15521 1.20803 1.16193 1.18591 0.86608 0.95502 1.45733 0.93903 1.43349 1.08829 1.41191 1.24968 1.21834 1.05776 0.93861 0.82291 1.24248 0.72150 0.86685 0.86089 1.90732 1.44429 1.20261 1.87151 1.84484 1.80284 1.48649 1.18279 1.20834 0.87545 0.81678 0.82978 1.90558 1.81078 1.45019 1.30795 1.21593 0.91017 1.02829 1.00993 1.19851 0.81078 1.02587 1.00855 1.26407 0.97638 0.85241 0.86455 1.70632 0.99052 1.25939 1.27026 1.20413 0.95287 0.98441 0.98105 1.20705 0.88127 1.00447 1.00279 1.21555 1.00471 0.96014 0.94640 1.21575 0.94742 0.95449 0.98065 1.20372 0.90419 1.02144 0.99278 1.20969 0.82838 1.00641 1.02883 1.84500 1.22699 1.52934 1.51586 0.90746 0.86843 0.82875 0.71176 0.88580 0.86020 0.86300 0.88073 0.83606 0.80703 0.80143 0.83016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.36 13.96 21.66 0.30 -53.06 16 2 C 0.01 0.58 5.28 84.93 0.45 1.03 16 3 Si 0.93 38.28 24.97 68.60 1.71 39.99 16 4 H -0.23 -8.01 6.72 99.48 0.67 -7.35 16 5 H -0.28 -11.67 7.11 99.48 0.71 -10.96 16 6 H -0.24 -9.09 7.11 99.48 0.71 -8.38 16 7 C -0.34 -19.69 9.36 84.04 0.79 -18.91 16 8 H 0.04 2.99 7.92 -2.91 -0.02 2.97 16 9 N -0.46 -22.01 1.74 -639.59 -1.11 -23.13 16 10 C 0.09 3.18 4.33 85.63 0.37 3.55 16 11 C 0.47 16.38 7.64 71.23 0.54 16.93 16 12 O -0.54 -23.47 17.00 21.95 0.37 -23.09 16 13 O -0.50 -12.36 13.42 -51.35 -0.69 -13.04 16 14 C 0.48 21.88 7.38 87.66 0.65 22.53 16 15 O -0.59 -31.96 15.86 -3.06 -0.05 -32.01 16 16 C -0.12 -4.05 4.30 29.85 0.13 -3.92 16 17 C -0.01 -0.17 5.13 29.85 0.15 -0.01 16 18 C 0.25 7.77 7.49 88.39 0.66 8.43 16 19 N -0.50 -15.47 11.34 -296.27 -3.36 -18.83 16 20 C -0.01 -0.30 7.24 39.32 0.28 -0.02 16 21 C -0.08 -1.44 10.10 22.46 0.23 -1.22 16 22 C -0.11 -1.23 10.02 22.25 0.22 -1.01 16 23 C -0.08 -0.87 10.03 22.31 0.22 -0.64 16 24 C -0.10 -1.79 10.06 22.30 0.22 -1.57 16 25 C -0.02 -0.62 7.43 22.88 0.17 -0.45 16 26 O -0.23 -6.82 10.77 -9.95 -0.11 -6.93 16 27 H 0.28 15.10 8.31 -92.71 -0.77 14.33 16 28 H 0.11 4.20 3.62 -2.39 -0.01 4.19 16 29 H 0.15 4.05 6.72 -2.38 -0.02 4.03 16 30 H 0.43 6.54 9.10 -74.06 -0.67 5.87 16 31 H 0.10 2.98 7.45 -2.39 -0.02 2.96 16 32 H 0.12 3.30 7.41 -2.39 -0.02 3.29 16 33 H 0.12 3.72 8.10 -2.39 -0.02 3.70 16 34 H 0.10 3.22 8.10 -2.39 -0.02 3.20 16 35 H 0.15 2.29 8.06 -2.91 -0.02 2.27 16 36 H 0.18 0.62 8.06 -2.91 -0.02 0.60 16 37 H 0.18 0.45 8.06 -2.91 -0.02 0.42 16 38 H 0.15 1.98 8.06 -2.91 -0.02 1.96 16 Total: -1.00 -84.87 334.72 2.58 -82.29 By element: Atomic # 1 Polarization: 22.67 SS G_CDS: 0.42 Total: 23.09 kcal Atomic # 6 Polarization: 19.63 SS G_CDS: 5.09 Total: 24.72 kcal Atomic # 7 Polarization: -90.85 SS G_CDS: -4.17 Total: -95.02 kcal Atomic # 8 Polarization: -74.60 SS G_CDS: -0.47 Total: -75.07 kcal Atomic # 14 Polarization: 38.28 SS G_CDS: 1.71 Total: 39.99 kcal Total: -84.87 2.58 -82.29 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739077803.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.727 kcal (2) G-P(sol) polarization free energy of solvation -84.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds