Wall clock time and date at job start Tue Mar 31 2020 12:49:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31346 * 1 3 3 Si 1.86798 * 120.00241 * 2 1 4 4 H 1.48501 * 109.47264 * 270.00134 * 3 2 1 5 5 H 1.48502 * 109.47279 * 30.00000 * 3 2 1 6 6 H 1.48496 * 109.47085 * 150.00286 * 3 2 1 7 7 C 1.39024 * 119.99735 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99973 * 197.67738 * 7 2 1 9 9 N 1.36872 * 119.99864 * 17.67492 * 7 2 1 10 10 C 1.38254 * 125.62140 * 218.35803 * 9 7 2 11 11 C 1.46715 * 125.44823 * 359.97438 * 10 9 7 12 12 O 1.21589 * 120.00488 * 185.24787 * 11 10 9 13 13 O 1.34868 * 119.99894 * 5.25154 * 11 10 9 14 14 C 1.45198 * 117.00251 * 184.10071 * 13 11 10 15 15 C 1.52997 * 109.47240 * 175.33342 * 14 13 11 16 16 N 1.46494 * 109.47386 * 64.99962 * 15 14 13 17 17 C 1.34774 * 120.00364 * 179.97438 * 16 15 14 18 18 O 1.21518 * 119.99894 * 359.97438 * 17 16 15 19 19 O 1.34634 * 120.00390 * 179.97438 * 17 16 15 20 20 C 1.36215 * 109.10542 * 180.02562 * 10 9 7 21 21 C 1.41656 * 107.74011 * 359.97438 * 20 10 9 22 22 C 1.40046 * 133.33848 * 180.02562 * 21 20 10 23 23 C 1.36562 * 119.83468 * 180.02562 * 22 21 20 24 24 C 1.38867 * 120.59842 * 359.96981 * 23 22 21 25 25 C 1.37843 * 120.63848 * 0.29910 * 24 23 22 26 26 C 1.37816 * 125.62059 * 38.35833 * 9 7 2 27 27 H 0.97005 * 119.99203 * 4.94017 * 1 2 3 28 28 H 1.09002 * 109.47057 * 295.33252 * 14 13 11 29 29 H 1.08998 * 109.47302 * 55.32940 * 14 13 11 30 30 H 1.09011 * 109.46838 * 184.99903 * 15 14 13 31 31 H 1.08998 * 109.47104 * 304.99397 * 15 14 13 32 32 H 0.97004 * 120.00106 * 0.02562 * 16 15 14 33 33 H 0.96701 * 117.00309 * 179.97438 * 19 17 16 34 34 H 1.07996 * 126.13021 * 180.02562 * 20 10 9 35 35 H 1.08004 * 120.07999 * 359.97438 * 22 21 20 36 36 H 1.07999 * 119.70167 * 180.02562 * 23 22 21 37 37 H 1.08005 * 119.67946 * 180.02562 * 24 23 22 38 38 H 1.08000 * 120.09092 * 179.65545 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3135 0.0000 0.0000 3 14 2.2475 1.6177 0.0000 4 1 2.4950 2.0464 -1.4001 5 1 1.4450 2.6527 0.7000 6 1 3.5451 1.4400 0.7000 7 6 2.0085 -1.2040 -0.0005 8 1 3.0502 -1.2263 0.2835 9 7 1.3725 -2.3612 -0.3610 10 6 1.5601 -3.5992 0.2250 11 6 2.4754 -3.8852 1.3355 12 8 2.6341 -5.0299 1.7133 13 8 3.1408 -2.8781 1.9373 14 6 4.0976 -3.2427 2.9667 15 6 4.8315 -1.9893 3.4478 16 7 3.8808 -1.0883 4.1039 17 6 4.3052 0.0862 4.6106 18 8 5.4765 0.3977 4.5236 19 8 3.4314 0.9145 5.2131 20 6 0.7602 -4.5114 -0.3942 21 6 0.0380 -3.8347 -1.4077 22 6 -0.9142 -4.2472 -2.3481 23 6 -1.4460 -3.3400 -3.2193 24 6 -1.0518 -2.0090 -3.1820 25 6 -0.1122 -1.5800 -2.2692 26 6 0.4396 -2.4842 -1.3678 27 1 -0.4849 0.8370 -0.0723 28 1 3.5726 -3.7005 3.8051 29 1 4.8181 -3.9514 2.5586 30 1 5.6105 -2.2735 4.1554 31 1 5.2829 -1.4827 2.5948 32 1 2.9460 -1.3374 4.1743 33 1 3.7826 1.7455 5.5613 34 1 0.6886 -5.5621 -0.1548 35 1 -1.2265 -5.2805 -2.3846 36 1 -2.1805 -3.6604 -3.9433 37 1 -1.4824 -1.3040 -3.8777 38 1 0.1921 -0.5439 -2.2516 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000739092706.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:49:07 Heat of formation + Delta-G solvation = -112.229040 kcal Electronic energy + Delta-G solvation = -26543.971186 eV Core-core repulsion = 22545.092750 eV Total energy + Delta-G solvation = -3998.878436 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.109 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.61159 -40.18803 -39.38782 -36.68406 -36.02451 -35.87257 -34.70551 -33.69155 -30.78552 -30.05408 -29.06496 -28.16055 -25.00366 -24.32622 -22.89116 -21.52566 -21.08892 -20.48012 -19.38163 -18.92848 -18.09431 -17.35903 -17.20730 -16.24112 -16.07134 -15.82239 -15.42765 -14.91732 -14.83319 -14.72869 -13.89665 -13.61142 -13.46629 -13.23163 -13.04002 -12.94662 -12.57001 -12.44384 -12.02443 -11.84692 -11.77361 -11.44409 -11.32384 -11.22638 -10.82301 -10.70743 -10.63856 -10.41778 -10.26892 -10.12208 -9.87173 -9.26067 -9.21697 -8.73671 -7.29532 -6.99064 -6.63957 -4.54910 1.58042 2.42083 2.69536 2.82834 2.86356 2.96595 2.99782 3.02801 3.07438 3.72945 4.01258 4.42921 4.59877 4.63389 4.76621 5.01062 5.06863 5.27096 5.31377 5.67660 5.75518 5.82906 5.90245 6.07609 6.21375 6.33159 6.46582 6.56149 6.63826 6.73572 6.84349 6.94158 7.01842 7.07666 7.38804 7.40883 7.51212 7.58812 7.82369 7.94091 8.27761 8.34441 8.41005 8.72188 9.18972 10.10380 Molecular weight = 318.11amu Principal moments of inertia in cm(-1) A = 0.013855 B = 0.004983 C = 0.003852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2020.479710 B = 5617.528344 C = 7267.193917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.814 5.814 2 C 0.056 3.944 3 Si 0.923 3.077 4 H -0.268 1.268 5 H -0.276 1.276 6 H -0.261 1.261 7 C -0.339 4.339 8 H 0.116 0.884 9 N -0.236 5.236 10 C -0.024 4.024 11 C 0.548 3.452 12 O -0.526 6.526 13 O -0.332 6.332 14 C 0.049 3.951 15 C 0.143 3.857 16 N -0.700 5.700 17 C 0.665 3.335 18 O -0.587 6.587 19 O -0.526 6.526 20 C -0.160 4.160 21 C -0.131 4.131 22 C -0.085 4.085 23 C -0.157 4.157 24 C -0.147 4.147 25 C -0.051 4.051 26 C 0.092 3.908 27 H 0.283 0.717 28 H 0.077 0.923 29 H 0.090 0.910 30 H 0.092 0.908 31 H 0.085 0.915 32 H 0.414 0.586 33 H 0.426 0.574 34 H 0.134 0.866 35 H 0.105 0.895 36 H 0.104 0.896 37 H 0.106 0.894 38 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.430 -0.231 3.869 5.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.443 5.443 2 C -0.157 4.157 3 Si 0.747 3.253 4 H -0.193 1.193 5 H -0.201 1.201 6 H -0.185 1.185 7 C -0.467 4.467 8 H 0.134 0.866 9 N 0.103 4.897 10 C -0.137 4.137 11 C 0.396 3.604 12 O -0.417 6.417 13 O -0.248 6.248 14 C -0.026 4.026 15 C 0.020 3.980 16 N -0.360 5.360 17 C 0.417 3.583 18 O -0.478 6.478 19 O -0.335 6.335 20 C -0.188 4.188 21 C -0.135 4.135 22 C -0.104 4.104 23 C -0.176 4.176 24 C -0.168 4.168 25 C -0.071 4.071 26 C -0.024 4.024 27 H 0.094 0.906 28 H 0.095 0.905 29 H 0.108 0.892 30 H 0.110 0.890 31 H 0.103 0.897 32 H 0.250 0.750 33 H 0.286 0.714 34 H 0.151 0.849 35 H 0.124 0.876 36 H 0.122 0.878 37 H 0.124 0.876 38 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 3.917 -0.280 4.093 5.673 hybrid contribution 0.038 1.228 0.447 1.307 sum 3.955 0.947 4.541 6.096 Atomic orbital electron populations 1.70011 1.06400 1.29828 1.38016 1.25592 0.95323 1.00544 0.94256 0.85963 0.80010 0.80011 0.79323 1.19295 1.20150 1.18516 1.19937 0.96205 0.82760 1.47834 0.86630 1.40112 1.25965 1.05196 1.18473 1.19018 1.06227 0.88716 0.99713 1.20060 0.77607 0.82382 0.80377 1.90800 1.64480 1.22043 1.64341 1.86923 1.51040 1.37739 1.49134 1.23227 0.92124 0.96424 0.90845 1.21438 0.90599 0.88470 0.97488 1.44514 1.13994 1.17265 1.60244 1.17733 0.82540 0.81031 0.77001 1.91035 1.17116 1.76078 1.63525 1.84211 1.43494 1.34164 1.71660 1.20296 1.00527 0.97986 1.00003 1.17929 1.02038 0.93215 1.00332 1.20058 0.96839 0.98238 0.95287 1.20292 1.02526 0.93779 1.00966 1.20588 0.99979 0.95640 1.00605 1.20109 0.95909 0.97979 0.93105 1.18129 0.97647 0.93884 0.92717 0.90649 0.90508 0.89220 0.89030 0.89694 0.75000 0.71440 0.84854 0.87642 0.87797 0.87575 0.86818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -20.12 10.89 55.50 0.60 -19.52 16 2 C 0.06 1.33 4.43 -17.47 -0.08 1.25 16 3 Si 0.92 18.46 29.59 -169.99 -5.03 13.43 16 4 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 5 H -0.28 -5.50 7.11 56.52 0.40 -5.09 16 6 H -0.26 -5.28 7.11 56.52 0.40 -4.87 16 7 C -0.34 -8.25 8.73 -15.01 -0.13 -8.38 16 8 H 0.12 2.74 6.87 -52.49 -0.36 2.38 16 9 N -0.24 -5.84 2.83 -56.10 -0.16 -6.00 16 10 C -0.02 -0.55 6.76 -82.27 -0.56 -1.11 16 11 C 0.55 11.52 7.90 34.15 0.27 11.79 16 12 O -0.53 -11.17 16.62 -19.33 -0.32 -11.49 16 13 O -0.33 -6.15 7.98 -40.95 -0.33 -6.48 16 14 C 0.05 0.65 5.63 37.16 0.21 0.86 16 15 C 0.14 1.78 6.07 -4.05 -0.02 1.75 16 16 N -0.70 -9.63 5.51 -65.28 -0.36 -9.99 16 17 C 0.67 9.83 9.12 54.05 0.49 10.32 16 18 O -0.59 -10.20 17.13 -19.29 -0.33 -10.53 16 19 O -0.53 -6.35 13.48 -40.31 -0.54 -6.89 16 20 C -0.16 -3.59 10.55 -39.01 -0.41 -4.00 16 21 C -0.13 -2.98 6.16 -106.89 -0.66 -3.64 16 22 C -0.09 -1.68 10.06 -39.51 -0.40 -2.08 16 23 C -0.16 -2.91 9.97 -39.95 -0.40 -3.31 16 24 C -0.15 -2.91 10.02 -39.49 -0.40 -3.30 16 25 C -0.05 -1.17 8.55 -39.41 -0.34 -1.51 16 26 C 0.09 2.25 6.07 -83.84 -0.51 1.74 16 27 H 0.28 6.51 8.31 -40.82 -0.34 6.17 16 28 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.09 1.08 8.09 -51.93 -0.42 0.66 16 30 H 0.09 0.94 8.14 -51.92 -0.42 0.52 16 31 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 32 H 0.41 5.56 8.58 -40.82 -0.35 5.21 16 33 H 0.43 3.07 9.11 45.56 0.42 3.48 16 34 H 0.13 2.69 8.06 -52.49 -0.42 2.26 16 35 H 0.11 1.77 8.06 -52.48 -0.42 1.35 16 36 H 0.10 1.59 8.06 -52.49 -0.42 1.17 16 37 H 0.11 1.79 8.06 -52.48 -0.42 1.36 16 38 H 0.11 2.64 6.44 -52.49 -0.34 2.30 16 LS Contribution 339.46 15.07 5.12 5.12 Total: -1.00 -31.24 339.46 -7.42 -38.67 By element: Atomic # 1 Polarization: 16.43 SS G_CDS: -3.15 Total: 13.28 kcal Atomic # 6 Polarization: 3.32 SS G_CDS: -2.93 Total: 0.39 kcal Atomic # 7 Polarization: -35.59 SS G_CDS: 0.09 Total: -35.50 kcal Atomic # 8 Polarization: -33.86 SS G_CDS: -1.52 Total: -35.39 kcal Atomic # 14 Polarization: 18.46 SS G_CDS: -5.03 Total: 13.43 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -31.24 -7.42 -38.67 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739092706.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.561 kcal (2) G-P(sol) polarization free energy of solvation -31.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds