Wall clock time and date at job start Tue Mar 31 2020 12:49:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31346 * 1 3 3 Si 1.86798 * 120.00241 * 2 1 4 4 H 1.48501 * 109.47264 * 270.00134 * 3 2 1 5 5 H 1.48502 * 109.47279 * 30.00000 * 3 2 1 6 6 H 1.48496 * 109.47085 * 150.00286 * 3 2 1 7 7 C 1.39024 * 119.99735 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99973 * 197.67738 * 7 2 1 9 9 N 1.36872 * 119.99864 * 17.67492 * 7 2 1 10 10 C 1.38254 * 125.62140 * 218.35803 * 9 7 2 11 11 C 1.46715 * 125.44823 * 359.97438 * 10 9 7 12 12 O 1.21589 * 120.00488 * 185.24787 * 11 10 9 13 13 O 1.34868 * 119.99894 * 5.25154 * 11 10 9 14 14 C 1.45198 * 117.00251 * 184.10071 * 13 11 10 15 15 C 1.52997 * 109.47240 * 175.33342 * 14 13 11 16 16 N 1.46494 * 109.47386 * 64.99962 * 15 14 13 17 17 C 1.34774 * 120.00364 * 179.97438 * 16 15 14 18 18 O 1.21518 * 119.99894 * 359.97438 * 17 16 15 19 19 O 1.34634 * 120.00390 * 179.97438 * 17 16 15 20 20 C 1.36215 * 109.10542 * 180.02562 * 10 9 7 21 21 C 1.41656 * 107.74011 * 359.97438 * 20 10 9 22 22 C 1.40046 * 133.33848 * 180.02562 * 21 20 10 23 23 C 1.36562 * 119.83468 * 180.02562 * 22 21 20 24 24 C 1.38867 * 120.59842 * 359.96981 * 23 22 21 25 25 C 1.37843 * 120.63848 * 0.29910 * 24 23 22 26 26 C 1.37816 * 125.62059 * 38.35833 * 9 7 2 27 27 H 0.97005 * 119.99203 * 4.94017 * 1 2 3 28 28 H 1.09002 * 109.47057 * 295.33252 * 14 13 11 29 29 H 1.08998 * 109.47302 * 55.32940 * 14 13 11 30 30 H 1.09011 * 109.46838 * 184.99903 * 15 14 13 31 31 H 1.08998 * 109.47104 * 304.99397 * 15 14 13 32 32 H 0.97004 * 120.00106 * 0.02562 * 16 15 14 33 33 H 0.96701 * 117.00309 * 179.97438 * 19 17 16 34 34 H 1.07996 * 126.13021 * 180.02562 * 20 10 9 35 35 H 1.08004 * 120.07999 * 359.97438 * 22 21 20 36 36 H 1.07999 * 119.70167 * 180.02562 * 23 22 21 37 37 H 1.08005 * 119.67946 * 180.02562 * 24 23 22 38 38 H 1.08000 * 120.09092 * 179.65545 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3135 0.0000 0.0000 3 14 2.2475 1.6177 0.0000 4 1 2.4950 2.0464 -1.4001 5 1 1.4450 2.6527 0.7000 6 1 3.5451 1.4400 0.7000 7 6 2.0085 -1.2040 -0.0005 8 1 3.0502 -1.2263 0.2835 9 7 1.3725 -2.3612 -0.3610 10 6 1.5601 -3.5992 0.2250 11 6 2.4754 -3.8852 1.3355 12 8 2.6341 -5.0299 1.7133 13 8 3.1408 -2.8781 1.9373 14 6 4.0976 -3.2427 2.9667 15 6 4.8315 -1.9893 3.4478 16 7 3.8808 -1.0883 4.1039 17 6 4.3052 0.0862 4.6106 18 8 5.4765 0.3977 4.5236 19 8 3.4314 0.9145 5.2131 20 6 0.7602 -4.5114 -0.3942 21 6 0.0380 -3.8347 -1.4077 22 6 -0.9142 -4.2472 -2.3481 23 6 -1.4460 -3.3400 -3.2193 24 6 -1.0518 -2.0090 -3.1820 25 6 -0.1122 -1.5800 -2.2692 26 6 0.4396 -2.4842 -1.3678 27 1 -0.4849 0.8370 -0.0723 28 1 3.5726 -3.7005 3.8051 29 1 4.8181 -3.9514 2.5586 30 1 5.6105 -2.2735 4.1554 31 1 5.2829 -1.4827 2.5948 32 1 2.9460 -1.3374 4.1743 33 1 3.7826 1.7455 5.5613 34 1 0.6886 -5.5621 -0.1548 35 1 -1.2265 -5.2805 -2.3846 36 1 -2.1805 -3.6604 -3.9433 37 1 -1.4824 -1.3040 -3.8777 38 1 0.1921 -0.5439 -2.2516 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000739092706.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:49:06 Heat of formation + Delta-G solvation = -132.821354 kcal Electronic energy + Delta-G solvation = -26544.864136 eV Core-core repulsion = 22545.092750 eV Total energy + Delta-G solvation = -3999.771386 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.109 amu Computer time = 1.76 seconds Orbital eigenvalues (eV) -42.25492 -41.35476 -40.88854 -37.97675 -37.60367 -37.11742 -35.93542 -35.42692 -32.49266 -31.29225 -30.64664 -29.75547 -26.76488 -25.75041 -24.15952 -22.78297 -22.63157 -22.03131 -21.03067 -20.06295 -19.74095 -18.82976 -18.42100 -17.70130 -17.44550 -17.15248 -16.96786 -16.49965 -16.34089 -16.10778 -15.35023 -15.06371 -14.74173 -14.65111 -14.62756 -14.45356 -13.91404 -13.88196 -13.60260 -13.51792 -13.06988 -12.94363 -12.81934 -12.53959 -12.36444 -12.22547 -12.01601 -11.91645 -11.72758 -11.65091 -11.48616 -10.94524 -10.43557 -10.36665 -9.00261 -8.70353 -8.33787 -6.36813 -0.06257 1.08686 1.19166 1.34142 1.37300 1.40087 1.44356 1.67561 1.73132 2.07732 2.31288 2.76996 2.88627 3.35633 3.53400 3.73260 3.95684 4.01818 4.21077 4.28487 4.43555 4.50167 4.55544 4.68601 4.73195 4.81999 4.97338 5.11078 5.16883 5.19371 5.28788 5.34630 5.44771 5.74326 5.76388 5.90303 5.96299 6.16847 6.28640 6.29429 6.57351 6.72575 7.00688 7.35945 7.44401 8.36564 Molecular weight = 318.11amu Principal moments of inertia in cm(-1) A = 0.013855 B = 0.004983 C = 0.003852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2020.479710 B = 5617.528344 C = 7267.193917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.846 5.846 2 C 0.027 3.973 3 Si 0.982 3.018 4 H -0.263 1.263 5 H -0.272 1.272 6 H -0.265 1.265 7 C -0.358 4.358 8 H 0.111 0.889 9 N -0.257 5.257 10 C -0.050 4.050 11 C 0.551 3.449 12 O -0.533 6.533 13 O -0.343 6.343 14 C 0.047 3.953 15 C 0.146 3.854 16 N -0.700 5.700 17 C 0.664 3.336 18 O -0.616 6.616 19 O -0.523 6.523 20 C -0.163 4.163 21 C -0.153 4.153 22 C -0.087 4.087 23 C -0.152 4.152 24 C -0.134 4.134 25 C -0.086 4.086 26 C 0.066 3.934 27 H 0.285 0.715 28 H 0.092 0.908 29 H 0.106 0.894 30 H 0.121 0.879 31 H 0.071 0.929 32 H 0.415 0.585 33 H 0.445 0.555 34 H 0.151 0.849 35 H 0.138 0.862 36 H 0.148 0.852 37 H 0.137 0.863 38 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.860 -0.657 3.383 4.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.476 5.476 2 C -0.184 4.184 3 Si 0.803 3.197 4 H -0.188 1.188 5 H -0.197 1.197 6 H -0.189 1.189 7 C -0.485 4.485 8 H 0.129 0.871 9 N 0.080 4.920 10 C -0.163 4.163 11 C 0.399 3.601 12 O -0.425 6.425 13 O -0.259 6.259 14 C -0.027 4.027 15 C 0.024 3.976 16 N -0.361 5.361 17 C 0.417 3.583 18 O -0.509 6.509 19 O -0.334 6.334 20 C -0.191 4.191 21 C -0.157 4.157 22 C -0.106 4.106 23 C -0.171 4.171 24 C -0.154 4.154 25 C -0.106 4.106 26 C -0.049 4.049 27 H 0.095 0.905 28 H 0.110 0.890 29 H 0.124 0.876 30 H 0.138 0.862 31 H 0.089 0.911 32 H 0.251 0.749 33 H 0.308 0.692 34 H 0.169 0.831 35 H 0.156 0.844 36 H 0.165 0.835 37 H 0.155 0.845 38 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 3.345 -0.693 3.621 4.978 hybrid contribution 0.149 1.275 0.568 1.404 sum 3.494 0.582 4.189 5.486 Atomic orbital electron populations 1.70081 1.07557 1.30461 1.39463 1.26252 0.95812 1.02724 0.93571 0.85103 0.78530 0.76683 0.79336 1.18750 1.19704 1.18950 1.20038 0.96196 0.83438 1.48839 0.87131 1.40269 1.26873 1.05535 1.19286 1.19547 1.07175 0.88767 1.00779 1.19804 0.77552 0.82585 0.80116 1.90774 1.64885 1.22222 1.64617 1.86883 1.51594 1.37293 1.50126 1.23568 0.91673 0.97372 0.90077 1.21518 0.90718 0.87711 0.97617 1.44629 1.14254 1.17302 1.59895 1.17830 0.82337 0.81304 0.76873 1.91014 1.18364 1.76762 1.64801 1.84196 1.42972 1.35050 1.71215 1.20613 1.00096 0.98694 0.99679 1.18351 1.03173 0.92750 1.01411 1.20496 0.95593 1.00226 0.94254 1.20768 1.02466 0.92825 1.01018 1.21042 0.97969 0.97046 0.99344 1.20193 0.98182 0.97357 0.94868 1.18631 0.97955 0.95169 0.93178 0.90509 0.89009 0.87577 0.86158 0.91062 0.74898 0.69184 0.83091 0.84423 0.83471 0.84548 0.88374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -42.87 10.89 21.67 0.24 -42.63 16 2 C 0.03 1.29 4.43 84.95 0.38 1.66 16 3 Si 0.98 38.56 29.59 68.60 2.03 40.59 16 4 H -0.26 -9.99 7.11 99.48 0.71 -9.29 16 5 H -0.27 -10.39 7.11 99.48 0.71 -9.68 16 6 H -0.27 -10.47 7.11 99.48 0.71 -9.76 16 7 C -0.36 -17.95 8.73 84.10 0.73 -17.22 16 8 H 0.11 5.45 6.87 -2.91 -0.02 5.43 16 9 N -0.26 -13.10 2.83 -331.41 -0.94 -14.03 16 10 C -0.05 -2.39 6.76 39.88 0.27 -2.12 16 11 C 0.55 23.45 7.90 70.04 0.55 24.00 16 12 O -0.53 -22.47 16.62 19.54 0.32 -22.15 16 13 O -0.34 -12.81 7.98 -57.82 -0.46 -13.27 16 14 C 0.05 1.21 5.63 71.98 0.41 1.61 16 15 C 0.15 3.52 6.07 86.38 0.52 4.04 16 16 N -0.70 -18.83 5.51 -590.86 -3.26 -22.09 16 17 C 0.66 19.13 9.12 129.79 1.18 20.31 16 18 O -0.62 -21.03 17.13 19.78 0.34 -20.69 16 19 O -0.52 -12.03 13.48 -55.43 -0.75 -12.78 16 20 C -0.16 -7.31 10.55 22.64 0.24 -7.07 16 21 C -0.15 -6.89 6.16 -21.33 -0.13 -7.02 16 22 C -0.09 -3.22 10.06 22.32 0.22 -2.99 16 23 C -0.15 -5.13 9.97 22.03 0.22 -4.91 16 24 C -0.13 -5.00 10.02 22.33 0.22 -4.78 16 25 C -0.09 -3.95 8.55 22.38 0.19 -3.76 16 26 C 0.07 3.29 6.07 39.07 0.24 3.52 16 27 H 0.28 13.41 8.31 -92.70 -0.77 12.64 16 28 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 29 H 0.11 2.42 8.09 -2.39 -0.02 2.40 16 30 H 0.12 2.25 8.14 -2.38 -0.02 2.23 16 31 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 32 H 0.42 10.99 8.58 -92.70 -0.80 10.19 16 33 H 0.45 5.81 9.11 -74.06 -0.67 5.14 16 34 H 0.15 5.99 8.06 -2.91 -0.02 5.97 16 35 H 0.14 4.12 8.06 -2.91 -0.02 4.10 16 36 H 0.15 3.71 8.06 -2.91 -0.02 3.69 16 37 H 0.14 4.17 8.06 -2.91 -0.02 4.15 16 38 H 0.10 4.70 6.44 -2.91 -0.02 4.68 16 Total: -1.00 -68.32 339.46 2.45 -65.88 By element: Atomic # 1 Polarization: 36.23 SS G_CDS: -0.33 Total: 35.90 kcal Atomic # 6 Polarization: 0.03 SS G_CDS: 5.25 Total: 5.28 kcal Atomic # 7 Polarization: -74.79 SS G_CDS: -3.96 Total: -78.75 kcal Atomic # 8 Polarization: -68.34 SS G_CDS: -0.54 Total: -68.89 kcal Atomic # 14 Polarization: 38.56 SS G_CDS: 2.03 Total: 40.59 kcal Total: -68.32 2.45 -65.88 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739092706.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.944 kcal (2) G-P(sol) polarization free energy of solvation -68.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.76 seconds