Wall clock time and date at job start Tue Mar 31 2020 12:05:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47223 * 2 1 4 4 C 1.50699 * 109.47144 * 239.99912 * 2 1 3 5 5 O 1.20821 * 120.00185 * 239.99811 * 4 2 1 6 6 O 1.34231 * 120.00087 * 60.00292 * 4 2 1 7 7 C 1.45196 * 117.00047 * 179.97438 * 6 4 2 8 8 C 1.50706 * 109.47037 * 179.97438 * 7 6 4 9 9 C 1.38294 * 119.93130 * 269.73094 * 8 7 6 10 10 C 1.38099 * 120.07055 * 179.72623 * 9 8 7 11 11 C 1.38885 * 119.92916 * 0.56465 * 10 9 8 12 12 O 1.35746 * 120.07221 * 179.68553 * 11 10 9 13 13 C 1.34828 * 117.00240 * 174.48968 * 12 11 10 14 14 H 1.08006 * 120.00054 * 5.05118 * 13 12 11 15 15 C 1.38655 * 120.00332 * 185.05591 * 13 12 11 16 16 N 1.31553 * 119.99844 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 120.00136 * 179.97438 * 15 13 12 18 18 H 1.48496 * 109.47105 * 60.00000 * 17 15 13 19 19 H 1.48499 * 109.47036 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.47062 * 300.00069 * 17 15 13 21 21 C 1.38888 * 119.85809 * 359.70827 * 11 10 9 22 22 C 1.38097 * 119.93011 * 359.97438 * 21 11 10 23 23 C 1.53006 * 109.47198 * 120.00144 * 2 1 3 24 24 F 1.39896 * 109.47109 * 180.02562 * 23 2 1 25 25 F 1.39901 * 109.46818 * 300.00170 * 23 2 1 26 26 F 1.39897 * 109.46896 * 59.99759 * 23 2 1 27 27 H 1.09001 * 109.47223 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47086 * 300.00298 * 1 2 3 29 29 H 1.09005 * 109.46969 * 60.00022 * 1 2 3 30 30 H 1.08996 * 109.47566 * 299.99750 * 7 6 4 31 31 H 1.09002 * 109.47418 * 60.00155 * 7 6 4 32 32 H 1.08001 * 119.96614 * 359.97036 * 9 8 7 33 33 H 1.08000 * 120.04137 * 180.26759 * 10 9 8 34 34 H 0.97003 * 120.00423 * 179.97438 * 16 15 13 35 35 H 1.08002 * 120.03290 * 179.97438 * 21 11 10 36 36 H 1.07997 * 119.96090 * 180.02562 * 22 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 8 2.7270 -1.6927 -1.1196 6 8 1.7081 -0.2518 -2.4496 7 6 2.2277 -0.9857 -3.5896 8 6 1.7627 -0.3292 -4.8640 9 6 0.5745 -0.7251 -5.4504 10 6 0.1428 -0.1216 -6.6151 11 6 0.9092 0.8758 -7.2039 12 8 0.4908 1.4666 -8.3522 13 6 1.2216 2.5037 -8.8086 14 1 2.1405 2.7772 -8.3112 15 6 0.7935 3.2192 -9.9164 16 7 -0.3255 2.8859 -10.5225 17 14 1.8056 4.6565 -10.5482 18 1 3.1587 4.1789 -10.9306 19 1 1.1363 5.2501 -11.7335 20 1 1.9261 5.6835 -9.4824 21 6 2.1048 1.2673 -6.6155 22 6 2.5277 0.6644 -5.4473 23 6 2.0400 -0.7213 1.2493 24 9 3.4390 -0.7208 1.2495 25 9 1.5736 -0.0618 2.3915 26 9 1.5736 -2.0402 1.2492 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 3.3172 -0.9846 -3.5566 31 1 1.8642 -2.0128 -3.5569 32 1 -0.0185 -1.5044 -4.9949 33 1 -0.7873 -0.4282 -7.0703 34 1 -0.6253 3.3867 -11.2973 35 1 2.7032 2.0424 -7.0712 36 1 3.4571 0.9687 -4.9891 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000745624717.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:05:43 Heat of formation + Delta-G solvation = -262.308411 kcal Electronic energy + Delta-G solvation = -25771.431823 eV Core-core repulsion = 21191.895965 eV Total energy + Delta-G solvation = -4579.535858 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.091 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -51.20841 -48.69723 -48.66375 -41.76352 -40.78372 -38.65045 -37.48227 -35.34097 -34.36139 -32.09514 -31.81667 -27.90532 -27.50357 -26.78090 -24.86997 -23.68862 -22.30496 -21.92284 -19.96606 -19.90251 -19.56039 -18.99820 -18.67856 -18.39413 -17.72109 -17.10240 -16.39924 -16.35493 -15.93749 -15.59298 -15.56693 -15.49410 -15.19508 -15.07198 -14.83767 -14.77821 -14.64385 -14.50599 -14.30510 -14.10987 -13.80822 -13.55215 -13.39626 -13.07155 -13.02371 -12.63541 -12.48144 -12.43972 -12.23366 -12.15015 -11.75459 -11.66715 -11.20693 -10.81056 -9.83715 -9.06640 -8.48904 -6.17420 0.37880 0.56192 0.91354 1.24448 1.36562 1.46945 1.52447 1.75868 2.17321 2.53928 2.76443 2.90166 3.03441 3.19401 3.45743 3.55521 3.71659 3.85517 3.89926 3.92854 4.14561 4.29620 4.37782 4.54783 4.64826 4.65636 4.74328 4.99074 5.11789 5.12396 5.22262 5.25446 5.50464 5.66396 5.68254 6.00109 6.12111 6.45348 6.95625 7.73552 8.73537 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.028668 B = 0.002297 C = 0.002260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.456501 B =12186.619892 C =12385.376205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.129 4.129 3 H 0.182 0.818 4 C 0.470 3.530 5 O -0.523 6.523 6 O -0.342 6.342 7 C 0.130 3.870 8 C -0.183 4.183 9 C -0.039 4.039 10 C -0.206 4.206 11 C 0.127 3.873 12 O -0.226 6.226 13 C -0.416 4.416 14 H 0.105 0.895 15 C -0.020 4.020 16 N -0.918 5.918 17 Si 1.018 2.982 18 H -0.257 1.257 19 H -0.273 1.273 20 H -0.256 1.256 21 C -0.246 4.246 22 C -0.042 4.042 23 C 0.469 3.531 24 F -0.185 7.185 25 F -0.169 7.169 26 F -0.182 7.182 27 H 0.070 0.930 28 H 0.106 0.894 29 H 0.101 0.899 30 H 0.085 0.915 31 H 0.088 0.912 32 H 0.151 0.849 33 H 0.119 0.881 34 H 0.274 0.726 35 H 0.124 0.876 36 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.873 -4.109 22.582 23.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.149 4.149 3 H 0.199 0.801 4 C 0.313 3.687 5 O -0.412 6.412 6 O -0.258 6.258 7 C 0.058 3.942 8 C -0.183 4.183 9 C -0.057 4.057 10 C -0.226 4.226 11 C 0.075 3.925 12 O -0.132 6.132 13 C -0.492 4.492 14 H 0.122 0.878 15 C -0.218 4.218 16 N -0.556 5.556 17 Si 0.837 3.163 18 H -0.181 1.181 19 H -0.197 1.197 20 H -0.180 1.180 21 C -0.265 4.265 22 C -0.060 4.060 23 C 0.414 3.586 24 F -0.166 7.166 25 F -0.150 7.150 26 F -0.164 7.164 27 H 0.089 0.911 28 H 0.125 0.875 29 H 0.120 0.880 30 H 0.104 0.896 31 H 0.106 0.894 32 H 0.169 0.831 33 H 0.137 0.863 34 H 0.083 0.917 35 H 0.141 0.859 36 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 3.775 -4.420 22.267 23.013 hybrid contribution 0.455 0.316 -0.598 0.816 sum 4.230 -4.103 21.669 22.456 Atomic orbital electron populations 1.21941 0.86618 1.05079 1.07087 1.22406 1.03271 1.03681 0.85509 0.80069 1.23133 0.77271 0.82556 0.85762 1.90766 1.36230 1.26543 1.87629 1.86582 1.69258 1.55684 1.14252 1.21767 0.99071 0.94364 0.79034 1.19198 0.98458 1.03078 0.97601 1.20906 0.94510 0.97545 0.92720 1.20458 1.01800 1.00757 0.99544 1.20017 0.93441 0.92790 0.86226 1.83948 1.51531 1.43775 1.33929 1.21820 1.06239 1.07598 1.13540 0.87804 1.26590 0.97884 1.01576 0.95769 1.70168 1.22853 1.41540 1.20997 0.84657 0.77558 0.75970 0.78137 1.18143 1.19745 1.18042 1.21252 0.98517 1.06341 1.00420 1.20971 0.99022 0.92946 0.93017 1.19986 0.75455 0.77603 0.85509 1.93210 1.30264 1.96363 1.96773 1.93217 1.88342 1.80500 1.52944 1.93198 1.88314 1.38111 1.96767 0.91065 0.87513 0.87979 0.89629 0.89369 0.83111 0.86310 0.91721 0.85856 0.83983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 8.88 71.98 0.64 -0.85 16 2 C -0.13 -1.75 2.81 -11.54 -0.03 -1.78 16 3 H 0.18 1.36 8.14 -2.39 -0.02 1.34 16 4 C 0.47 9.75 7.02 71.24 0.50 10.25 16 5 O -0.52 -13.95 14.58 21.98 0.32 -13.63 16 6 O -0.34 -7.58 10.11 -51.43 -0.52 -8.10 16 7 C 0.13 3.02 5.59 71.24 0.40 3.42 16 8 C -0.18 -5.31 5.52 -19.83 -0.11 -5.42 16 9 C -0.04 -1.20 9.69 22.25 0.22 -0.98 16 10 C -0.21 -8.22 9.99 22.39 0.22 -7.99 16 11 C 0.13 5.98 6.65 22.58 0.15 6.13 16 12 O -0.23 -13.10 9.76 -22.68 -0.22 -13.32 16 13 C -0.42 -23.38 9.49 67.92 0.64 -22.73 16 14 H 0.10 5.30 5.20 -2.91 -0.02 5.28 16 15 C -0.02 -1.11 5.49 84.83 0.47 -0.64 16 16 N -0.92 -54.94 13.67 21.61 0.30 -54.64 16 17 Si 1.02 41.34 29.55 68.60 2.03 43.37 16 18 H -0.26 -9.80 7.11 99.48 0.71 -9.10 16 19 H -0.27 -10.72 7.11 99.48 0.71 -10.01 16 20 H -0.26 -9.73 7.11 99.48 0.71 -9.03 16 21 C -0.25 -10.07 9.17 22.39 0.21 -9.86 16 22 C -0.04 -1.33 9.69 22.25 0.22 -1.11 16 23 C 0.47 8.08 2.42 71.98 0.17 8.25 16 24 F -0.18 -3.90 16.40 44.97 0.74 -3.16 16 25 F -0.17 -2.51 16.80 44.97 0.76 -1.76 16 26 F -0.18 -3.82 15.88 44.97 0.71 -3.11 16 27 H 0.07 0.80 7.80 -2.39 -0.02 0.78 16 28 H 0.11 0.65 7.80 -2.39 -0.02 0.63 16 29 H 0.10 0.99 8.11 -2.38 -0.02 0.97 16 30 H 0.09 1.85 8.08 -2.39 -0.02 1.83 16 31 H 0.09 1.87 8.07 -2.39 -0.02 1.85 16 32 H 0.15 3.55 8.06 -2.91 -0.02 3.52 16 33 H 0.12 4.66 8.06 -2.91 -0.02 4.64 16 34 H 0.27 15.03 8.31 -92.71 -0.77 14.26 16 35 H 0.12 5.11 5.64 -2.91 -0.02 5.10 16 36 H 0.14 3.62 8.06 -2.91 -0.02 3.59 16 Total: -1.00 -70.97 331.83 8.93 -62.03 By element: Atomic # 1 Polarization: 14.52 SS G_CDS: 1.13 Total: 15.65 kcal Atomic # 6 Polarization: -27.02 SS G_CDS: 3.69 Total: -23.33 kcal Atomic # 7 Polarization: -54.94 SS G_CDS: 0.30 Total: -54.64 kcal Atomic # 8 Polarization: -34.64 SS G_CDS: -0.42 Total: -35.06 kcal Atomic # 9 Polarization: -10.23 SS G_CDS: 2.21 Total: -8.02 kcal Atomic # 14 Polarization: 41.34 SS G_CDS: 2.03 Total: 43.37 kcal Total: -70.97 8.93 -62.03 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000745624717.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -200.274 kcal (2) G-P(sol) polarization free energy of solvation -70.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -271.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -262.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds