Wall clock time and date at job start Tue Mar 31 2020 12:33:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35893 * 117.00714 * 2 1 4 4 C 1.38812 * 120.01793 * 0.02562 * 3 2 1 5 5 C 1.38175 * 120.08914 * 179.97438 * 4 3 2 6 6 C 1.38161 * 120.12214 * 359.74427 * 5 4 3 7 7 C 1.38897 * 120.04265 * 0.51138 * 6 5 4 8 8 N 1.39875 * 120.04710 * 179.76462 * 7 6 5 9 9 C 1.34777 * 119.99984 * 224.31909 * 8 7 6 10 10 S 1.71198 * 120.00083 * 5.22854 * 9 8 7 11 11 N 1.34780 * 119.99574 * 185.22575 * 9 8 7 12 12 C 1.40595 * 119.99696 * 174.27634 * 11 9 8 13 13 C 1.40653 * 126.08411 * 318.80924 * 12 11 9 14 14 N 1.30905 * 108.39378 * 179.71984 * 13 12 11 15 15 N 1.40072 * 108.40183 * 0.40706 * 14 13 12 16 16 C 1.37321 * 126.06671 * 179.84958 * 15 14 13 17 17 H 1.08005 * 119.99511 * 174.43608 * 16 15 14 18 18 C 1.38976 * 120.00427 * 354.71270 * 16 15 14 19 19 N 1.31296 * 120.00108 * 4.95537 * 18 16 15 20 20 Si 1.86804 * 120.00334 * 184.96307 * 18 16 15 21 21 H 1.48496 * 109.47157 * 94.98778 * 20 18 16 22 22 H 1.48490 * 109.47104 * 214.99052 * 20 18 16 23 23 H 1.48500 * 109.47019 * 334.99338 * 20 18 16 24 24 C 1.35671 * 126.07866 * 138.78972 * 12 11 9 25 25 C 1.38582 * 120.02537 * 180.02562 * 3 2 1 26 26 H 1.08997 * 109.47439 * 180.02562 * 1 2 3 27 27 H 1.09008 * 109.46783 * 300.00196 * 1 2 3 28 28 H 1.08999 * 109.46859 * 59.99686 * 1 2 3 29 29 H 1.08002 * 119.95466 * 359.95830 * 4 3 2 30 30 H 1.07995 * 119.93495 * 180.02562 * 5 4 3 31 31 H 1.08005 * 119.97969 * 180.25175 * 6 5 4 32 32 H 0.97002 * 119.99291 * 44.32663 * 8 7 6 33 33 H 0.97002 * 120.00035 * 354.28292 * 11 9 8 34 34 H 1.08008 * 125.80307 * 359.97438 * 13 12 11 35 35 H 0.96994 * 120.00515 * 180.02562 * 19 18 16 36 36 H 1.07999 * 126.24886 * 0.02562 * 24 12 11 37 37 H 1.08004 * 120.05700 * 0.04125 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2107 0.0000 4 6 1.2906 2.3752 0.0005 5 6 1.9165 3.6071 0.0011 6 6 3.2959 3.6839 0.0064 7 6 4.0571 2.5221 0.0005 8 7 5.4537 2.5997 0.0009 9 6 6.1729 1.8075 -0.8185 10 16 5.3772 0.8034 -1.9540 11 7 7.5187 1.8059 -0.7441 12 6 8.2641 0.8944 -1.5123 13 6 7.9474 -0.4586 -1.7303 14 7 8.8699 -0.9801 -2.4987 15 7 9.8134 0.0125 -2.7930 16 6 10.9351 -0.1431 -3.5697 17 1 11.5504 0.7122 -3.8071 18 6 11.2755 -1.4001 -4.0550 19 7 10.4744 -2.4207 -3.8535 20 14 12.8729 -1.6379 -4.9938 21 1 13.9310 -2.1017 -4.0610 22 1 12.6740 -2.6518 -6.0603 23 1 13.2835 -0.3490 -5.6065 24 6 9.4166 1.1635 -2.1755 25 6 3.4300 1.2837 -0.0005 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 0.2120 2.3183 0.0003 30 1 1.3263 4.5115 0.0019 31 1 3.7828 4.6480 0.0109 32 1 5.9045 3.2237 0.5912 33 1 7.9729 2.4336 -0.1604 34 1 7.0869 -0.9778 -1.3346 35 1 10.7121 -3.2981 -4.1918 36 1 9.9271 2.1146 -2.2087 37 1 4.0194 0.3787 -0.0016 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000747366644.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:33:30 Heat of formation + Delta-G solvation = 109.426153 kcal Electronic energy + Delta-G solvation = -22840.651377 eV Core-core repulsion = 19326.430253 eV Total energy + Delta-G solvation = -3514.221124 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.089 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.37766 -39.77146 -38.72556 -36.96850 -34.66153 -33.30215 -30.69804 -30.36456 -29.51011 -27.71893 -27.23408 -25.03599 -24.13983 -22.35079 -22.06497 -20.67477 -20.01056 -18.75353 -18.11915 -17.57558 -16.26972 -16.22501 -15.98965 -15.70381 -15.54552 -15.07121 -14.90238 -14.37347 -13.86963 -13.61010 -13.49416 -13.12005 -12.99730 -12.62592 -12.32667 -11.91336 -11.74984 -11.65341 -11.27116 -11.17414 -11.00480 -10.93261 -10.57279 -10.55557 -10.17279 -9.43291 -8.96119 -8.60777 -8.28124 -8.13030 -7.40868 -6.86427 -6.62161 -6.39731 -4.29974 1.06528 1.49427 1.86200 2.36901 2.91054 2.93552 3.03504 3.08828 3.32501 3.50848 3.73143 3.79018 3.92924 4.27715 4.75055 4.76796 4.96044 4.97666 5.02595 5.07097 5.11710 5.34499 5.38148 5.53092 5.75161 6.13098 6.17615 6.20782 6.30794 6.37932 6.45257 6.60439 6.79312 6.85950 7.09295 7.16729 7.33282 7.45603 7.72958 7.79586 8.15887 8.61157 9.27657 9.56351 10.33456 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.028557 B = 0.002759 C = 0.002573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.253011 B =10145.095900 C =10879.973215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.312 6.312 3 C 0.134 3.866 4 C -0.212 4.212 5 C -0.078 4.078 6 C -0.167 4.167 7 C 0.186 3.814 8 N -0.649 5.649 9 C 0.538 3.462 10 S -0.612 6.612 11 N -0.560 5.560 12 C -0.088 4.088 13 C 0.031 3.969 14 N -0.260 5.260 15 N -0.138 5.138 16 C -0.323 4.323 17 H 0.118 0.882 18 C 0.048 3.952 19 N -0.763 5.763 20 Si 0.936 3.064 21 H -0.271 1.271 22 H -0.275 1.275 23 H -0.263 1.263 24 C -0.057 4.057 25 C -0.103 4.103 26 H 0.098 0.902 27 H 0.052 0.948 28 H 0.054 0.946 29 H 0.125 0.875 30 H 0.126 0.874 31 H 0.123 0.877 32 H 0.402 0.598 33 H 0.393 0.607 34 H 0.165 0.835 35 H 0.277 0.723 36 H 0.146 0.854 37 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.613 11.095 10.654 19.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.225 6.225 3 C 0.087 3.913 4 C -0.231 4.231 5 C -0.097 4.097 6 C -0.188 4.188 7 C 0.091 3.909 8 N -0.278 5.278 9 C 0.181 3.819 10 S -0.481 6.481 11 N -0.177 5.177 12 C -0.195 4.195 13 C -0.148 4.148 14 N -0.087 5.087 15 N 0.098 4.902 16 C -0.455 4.455 17 H 0.135 0.865 18 C -0.170 4.170 19 N -0.389 5.389 20 Si 0.759 3.241 21 H -0.196 1.196 22 H -0.200 1.200 23 H -0.187 1.187 24 C -0.211 4.211 25 C -0.126 4.126 26 H 0.116 0.884 27 H 0.071 0.929 28 H 0.073 0.927 29 H 0.143 0.857 30 H 0.144 0.856 31 H 0.141 0.859 32 H 0.240 0.760 33 H 0.229 0.771 34 H 0.182 0.818 35 H 0.087 0.913 36 H 0.163 0.837 37 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -12.532 8.749 9.100 17.788 hybrid contribution 0.964 2.112 0.978 2.519 sum -11.568 10.861 10.078 18.797 Atomic orbital electron populations 1.23024 0.78780 1.03783 1.01041 1.86120 1.20929 1.26751 1.88680 1.18645 0.91620 0.84157 0.96912 1.21195 0.99844 0.92376 1.09687 1.20555 0.93515 0.96966 0.98658 1.20757 0.93995 0.96665 1.07366 1.16885 0.80394 0.93291 1.00293 1.42043 1.05009 1.40417 1.40309 1.22495 0.85162 0.87193 0.87048 1.93376 1.69348 1.47912 1.37502 1.41517 1.01920 1.33934 1.40323 1.16785 0.98708 0.89820 1.14188 1.23708 0.99085 0.91478 1.00534 1.78349 0.99649 1.11567 1.19163 1.44602 1.14407 1.04780 1.26406 1.19924 1.00154 0.96552 1.28874 0.86469 1.25667 0.99330 0.94970 0.97068 1.70212 1.33227 1.00474 1.34953 0.85791 0.80084 0.79170 0.79016 1.19587 1.19979 1.18734 1.21348 1.00582 0.93181 1.05970 1.20485 0.91764 0.98644 1.01683 0.88403 0.92934 0.92728 0.85668 0.85642 0.85925 0.76031 0.77142 0.81788 0.91261 0.83674 0.83290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 9.81 101.05 0.99 1.24 16 2 O -0.31 -4.24 10.49 -19.40 -0.20 -4.45 16 3 C 0.13 1.85 6.68 -39.24 -0.26 1.59 16 4 C -0.21 -2.34 9.04 -39.39 -0.36 -2.69 16 5 C -0.08 -0.79 10.03 -39.63 -0.40 -1.18 16 6 C -0.17 -1.84 9.97 -39.37 -0.39 -2.23 16 7 C 0.19 2.51 5.83 -83.73 -0.49 2.02 16 8 N -0.65 -8.27 5.32 -11.42 -0.06 -8.33 16 9 C 0.54 9.25 7.66 -86.92 -0.67 8.58 16 10 S -0.61 -13.70 23.11 -107.50 -2.48 -16.19 16 11 N -0.56 -9.33 5.47 -11.54 -0.06 -9.39 16 12 C -0.09 -1.93 6.20 -83.84 -0.52 -2.45 16 13 C 0.03 0.79 10.06 -17.04 -0.17 0.62 16 14 N -0.26 -7.36 10.41 30.80 0.32 -7.04 16 15 N -0.14 -3.69 3.74 -11.41 -0.04 -3.73 16 16 C -0.32 -8.37 10.24 -14.82 -0.15 -8.52 16 17 H 0.12 2.71 7.84 -52.48 -0.41 2.30 16 18 C 0.05 1.21 5.50 -17.51 -0.10 1.12 16 19 N -0.76 -21.00 11.83 55.49 0.66 -20.34 16 20 Si 0.94 18.64 29.56 -169.99 -5.02 13.62 16 21 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 22 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 23 H -0.26 -5.02 7.11 56.52 0.40 -4.62 16 24 C -0.06 -1.30 11.49 -16.39 -0.19 -1.49 16 25 C -0.10 -1.59 7.81 -39.24 -0.31 -1.90 16 26 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.05 0.35 7.66 -51.92 -0.40 -0.04 16 28 H 0.05 0.42 7.66 -51.93 -0.40 0.02 16 29 H 0.13 1.06 6.29 -52.49 -0.33 0.73 16 30 H 0.13 0.91 8.06 -52.49 -0.42 0.48 16 31 H 0.12 1.07 8.06 -52.48 -0.42 0.65 16 32 H 0.40 3.46 8.84 -40.82 -0.36 3.10 16 33 H 0.39 4.80 8.85 -40.82 -0.36 4.43 16 34 H 0.17 4.08 7.02 -52.48 -0.37 3.71 16 35 H 0.28 6.96 8.31 -40.82 -0.34 6.62 16 36 H 0.15 2.78 8.06 -52.49 -0.42 2.36 16 37 H 0.15 2.67 6.53 -52.48 -0.34 2.32 16 LS Contribution 332.89 15.07 5.02 5.02 Total: -1.00 -35.10 332.89 -8.69 -43.79 By element: Atomic # 1 Polarization: 16.15 SS G_CDS: -3.80 Total: 12.35 kcal Atomic # 6 Polarization: -2.30 SS G_CDS: -3.01 Total: -5.30 kcal Atomic # 7 Polarization: -49.64 SS G_CDS: 0.81 Total: -48.83 kcal Atomic # 8 Polarization: -4.24 SS G_CDS: -0.20 Total: -4.45 kcal Atomic # 14 Polarization: 18.64 SS G_CDS: -5.02 Total: 13.62 kcal Atomic # 16 Polarization: -13.70 SS G_CDS: -2.48 Total: -16.19 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -35.10 -8.69 -43.79 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000747366644.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.214 kcal (2) G-P(sol) polarization free energy of solvation -35.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.788 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds