Wall clock time and date at job start Tue Mar 31 2020 12:33:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35893 * 117.00714 * 2 1 4 4 C 1.38812 * 120.01793 * 0.02562 * 3 2 1 5 5 C 1.38175 * 120.08914 * 179.97438 * 4 3 2 6 6 C 1.38161 * 120.12214 * 359.74427 * 5 4 3 7 7 C 1.38897 * 120.04265 * 0.51138 * 6 5 4 8 8 N 1.39875 * 120.04710 * 179.76462 * 7 6 5 9 9 C 1.34777 * 119.99984 * 224.31909 * 8 7 6 10 10 S 1.71198 * 120.00083 * 5.22854 * 9 8 7 11 11 N 1.34780 * 119.99574 * 185.22575 * 9 8 7 12 12 C 1.40595 * 119.99696 * 174.27634 * 11 9 8 13 13 C 1.40653 * 126.08411 * 318.80924 * 12 11 9 14 14 N 1.30905 * 108.39378 * 179.71984 * 13 12 11 15 15 N 1.40072 * 108.40183 * 0.40706 * 14 13 12 16 16 C 1.37321 * 126.06671 * 179.84958 * 15 14 13 17 17 H 1.08005 * 119.99511 * 174.43608 * 16 15 14 18 18 C 1.38976 * 120.00427 * 354.71270 * 16 15 14 19 19 N 1.31296 * 120.00108 * 4.95537 * 18 16 15 20 20 Si 1.86804 * 120.00334 * 184.96307 * 18 16 15 21 21 H 1.48496 * 109.47157 * 94.98778 * 20 18 16 22 22 H 1.48490 * 109.47104 * 214.99052 * 20 18 16 23 23 H 1.48500 * 109.47019 * 334.99338 * 20 18 16 24 24 C 1.35671 * 126.07866 * 138.78972 * 12 11 9 25 25 C 1.38582 * 120.02537 * 180.02562 * 3 2 1 26 26 H 1.08997 * 109.47439 * 180.02562 * 1 2 3 27 27 H 1.09008 * 109.46783 * 300.00196 * 1 2 3 28 28 H 1.08999 * 109.46859 * 59.99686 * 1 2 3 29 29 H 1.08002 * 119.95466 * 359.95830 * 4 3 2 30 30 H 1.07995 * 119.93495 * 180.02562 * 5 4 3 31 31 H 1.08005 * 119.97969 * 180.25175 * 6 5 4 32 32 H 0.97002 * 119.99291 * 44.32663 * 8 7 6 33 33 H 0.97002 * 120.00035 * 354.28292 * 11 9 8 34 34 H 1.08008 * 125.80307 * 359.97438 * 13 12 11 35 35 H 0.96994 * 120.00515 * 180.02562 * 19 18 16 36 36 H 1.07999 * 126.24886 * 0.02562 * 24 12 11 37 37 H 1.08004 * 120.05700 * 0.04125 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2107 0.0000 4 6 1.2906 2.3752 0.0005 5 6 1.9165 3.6071 0.0011 6 6 3.2959 3.6839 0.0064 7 6 4.0571 2.5221 0.0005 8 7 5.4537 2.5997 0.0009 9 6 6.1729 1.8075 -0.8185 10 16 5.3772 0.8034 -1.9540 11 7 7.5187 1.8059 -0.7441 12 6 8.2641 0.8944 -1.5123 13 6 7.9474 -0.4586 -1.7303 14 7 8.8699 -0.9801 -2.4987 15 7 9.8134 0.0125 -2.7930 16 6 10.9351 -0.1431 -3.5697 17 1 11.5504 0.7122 -3.8071 18 6 11.2755 -1.4001 -4.0550 19 7 10.4744 -2.4207 -3.8535 20 14 12.8729 -1.6379 -4.9938 21 1 13.9310 -2.1017 -4.0610 22 1 12.6740 -2.6518 -6.0603 23 1 13.2835 -0.3490 -5.6065 24 6 9.4166 1.1635 -2.1755 25 6 3.4300 1.2837 -0.0005 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 0.2120 2.3183 0.0003 30 1 1.3263 4.5115 0.0019 31 1 3.7828 4.6480 0.0109 32 1 5.9045 3.2237 0.5912 33 1 7.9729 2.4336 -0.1604 34 1 7.0869 -0.9778 -1.3346 35 1 10.7121 -3.2981 -4.1918 36 1 9.9271 2.1146 -2.2087 37 1 4.0194 0.3787 -0.0016 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000747366644.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:33:29 Heat of formation + Delta-G solvation = 85.416932 kcal Electronic energy + Delta-G solvation = -22841.692495 eV Core-core repulsion = 19326.430253 eV Total energy + Delta-G solvation = -3515.262242 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.089 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.71906 -41.26051 -39.94242 -38.16754 -36.03109 -35.05228 -32.29681 -31.62903 -30.73570 -29.30833 -28.02751 -26.86299 -25.56030 -23.41680 -23.21883 -22.44119 -21.67023 -20.13582 -19.38663 -19.21612 -17.69670 -17.33261 -17.16756 -17.01205 -16.56607 -16.42548 -16.33392 -15.66768 -15.54370 -15.13438 -14.88284 -14.46199 -14.32192 -13.72382 -13.50932 -13.28204 -13.12357 -12.89496 -12.78941 -12.68531 -12.20392 -12.10733 -12.07085 -11.86070 -11.52454 -11.15779 -10.75145 -10.17132 -9.87438 -9.26877 -8.94009 -8.62176 -8.47694 -8.08742 -6.25645 -0.13923 0.55562 0.61671 0.95053 1.30768 1.39153 1.48996 1.59262 1.77378 2.12475 2.34772 2.42780 2.64848 2.84400 2.96022 3.08273 3.96107 4.15363 4.26805 4.31045 4.36998 4.44771 4.46163 4.52316 4.59821 4.72665 4.77714 4.87445 4.98012 5.22054 5.27089 5.30617 5.39503 5.48862 5.56630 5.76588 5.93386 6.07688 6.30945 6.45779 6.56015 6.74735 7.42093 7.63553 8.51260 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.028557 B = 0.002759 C = 0.002573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.253011 B =10145.095900 C =10879.973215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.345 6.345 3 C 0.115 3.885 4 C -0.204 4.204 5 C -0.071 4.071 6 C -0.156 4.156 7 C 0.161 3.839 8 N -0.614 5.614 9 C 0.572 3.428 10 S -0.717 6.717 11 N -0.547 5.547 12 C -0.069 4.069 13 C 0.015 3.985 14 N -0.311 5.311 15 N -0.166 5.166 16 C -0.354 4.354 17 H 0.142 0.858 18 C -0.004 4.004 19 N -0.821 5.821 20 Si 1.018 2.982 21 H -0.264 1.264 22 H -0.279 1.279 23 H -0.244 1.244 24 C -0.049 4.049 25 C -0.133 4.133 26 H 0.110 0.890 27 H 0.074 0.926 28 H 0.063 0.937 29 H 0.154 0.846 30 H 0.167 0.833 31 H 0.156 0.844 32 H 0.429 0.571 33 H 0.422 0.578 34 H 0.155 0.845 35 H 0.277 0.723 36 H 0.188 0.812 37 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.932 15.290 11.755 23.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.260 6.260 3 C 0.068 3.932 4 C -0.223 4.223 5 C -0.089 4.089 6 C -0.176 4.176 7 C 0.067 3.933 8 N -0.243 5.243 9 C 0.211 3.789 10 S -0.589 6.589 11 N -0.167 5.167 12 C -0.176 4.176 13 C -0.165 4.165 14 N -0.139 5.139 15 N 0.068 4.932 16 C -0.485 4.485 17 H 0.159 0.841 18 C -0.216 4.216 19 N -0.448 5.448 20 Si 0.837 3.163 21 H -0.189 1.189 22 H -0.204 1.204 23 H -0.167 1.167 24 C -0.202 4.202 25 C -0.155 4.155 26 H 0.128 0.872 27 H 0.092 0.908 28 H 0.082 0.918 29 H 0.172 0.828 30 H 0.184 0.816 31 H 0.173 0.827 32 H 0.272 0.728 33 H 0.263 0.737 34 H 0.172 0.828 35 H 0.087 0.913 36 H 0.205 0.795 37 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -12.881 13.035 10.285 21.015 hybrid contribution 0.773 0.985 0.839 1.507 sum -12.108 14.020 11.123 21.608 Atomic orbital electron populations 1.23326 0.76377 1.05269 1.02447 1.86077 1.23596 1.27436 1.88868 1.18863 0.91415 0.85308 0.97617 1.21573 1.01250 0.91664 1.07821 1.21095 0.93474 0.97990 0.96386 1.21129 0.94452 0.96722 1.05343 1.17129 0.80299 0.93736 1.02137 1.41823 1.05065 1.38902 1.38523 1.21781 0.84949 0.86122 0.86098 1.93682 1.71247 1.52022 1.41935 1.41105 1.01434 1.33803 1.40403 1.16684 0.98419 0.89263 1.13263 1.23704 0.98528 0.93308 1.00931 1.78244 1.01087 1.13813 1.20797 1.44852 1.14885 1.05472 1.27946 1.20623 1.00479 0.97857 1.29531 0.84110 1.26869 1.02936 0.94258 0.97579 1.70394 1.35915 1.01149 1.37323 0.84587 0.74934 0.79561 0.77200 1.18872 1.20386 1.16675 1.22086 1.00422 0.93645 1.04046 1.20373 0.92782 0.98187 1.04183 0.87151 0.90769 0.91840 0.82802 0.81552 0.82668 0.72848 0.73710 0.82801 0.91340 0.79514 0.87155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 9.81 113.37 1.11 1.43 16 2 O -0.35 -9.72 10.49 -92.35 -0.97 -10.69 16 3 C 0.11 3.17 6.68 22.49 0.15 3.32 16 4 C -0.20 -3.94 9.04 22.39 0.20 -3.74 16 5 C -0.07 -1.12 10.03 22.24 0.22 -0.90 16 6 C -0.16 -2.83 9.97 22.41 0.22 -2.61 16 7 C 0.16 4.10 5.83 38.15 0.22 4.32 16 8 N -0.61 -14.33 5.32 -190.04 -1.01 -15.34 16 9 C 0.57 19.27 7.66 179.05 1.37 20.64 16 10 S -0.72 -33.68 23.11 -56.49 -1.31 -34.98 16 11 N -0.55 -17.28 5.47 -190.42 -1.04 -18.32 16 12 C -0.07 -3.01 6.20 37.73 0.23 -2.78 16 13 C 0.01 0.77 10.06 85.42 0.86 1.63 16 14 N -0.31 -18.53 10.41 -56.46 -0.59 -19.11 16 15 N -0.17 -9.04 3.74 -190.01 -0.71 -9.75 16 16 C -0.35 -18.53 10.24 84.01 0.86 -17.67 16 17 H 0.14 6.37 7.84 -2.91 -0.02 6.35 16 18 C 0.00 -0.22 5.50 84.95 0.47 0.25 16 19 N -0.82 -47.39 11.83 21.66 0.26 -47.14 16 20 Si 1.02 38.52 29.56 68.60 2.03 40.55 16 21 H -0.26 -9.59 7.11 99.48 0.71 -8.88 16 22 H -0.28 -10.56 7.11 99.48 0.71 -9.85 16 23 H -0.24 -8.34 7.11 99.48 0.71 -7.63 16 24 C -0.05 -2.19 11.49 83.37 0.96 -1.23 16 25 C -0.13 -4.23 7.81 22.49 0.18 -4.05 16 26 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16 27 H 0.07 0.85 7.66 -2.38 -0.02 0.83 16 28 H 0.06 0.89 7.66 -2.39 -0.02 0.87 16 29 H 0.15 2.01 6.29 -2.91 -0.02 1.99 16 30 H 0.17 1.34 8.06 -2.91 -0.02 1.32 16 31 H 0.16 1.81 8.06 -2.91 -0.02 1.79 16 32 H 0.43 5.67 8.84 -92.71 -0.82 4.85 16 33 H 0.42 8.80 8.85 -92.71 -0.82 7.98 16 34 H 0.15 8.29 7.02 -2.91 -0.02 8.27 16 35 H 0.28 14.74 8.31 -92.71 -0.77 13.97 16 36 H 0.19 6.54 8.06 -2.91 -0.02 6.51 16 37 H 0.11 4.33 6.53 -2.91 -0.02 4.31 16 Total: -1.00 -85.29 332.89 3.22 -82.07 By element: Atomic # 1 Polarization: 34.59 SS G_CDS: -0.50 Total: 34.10 kcal Atomic # 6 Polarization: -8.44 SS G_CDS: 7.06 Total: -1.38 kcal Atomic # 7 Polarization: -106.57 SS G_CDS: -3.09 Total: -109.66 kcal Atomic # 8 Polarization: -9.72 SS G_CDS: -0.97 Total: -10.69 kcal Atomic # 14 Polarization: 38.52 SS G_CDS: 2.03 Total: 40.55 kcal Atomic # 16 Polarization: -33.68 SS G_CDS: -1.31 Total: -34.98 kcal Total: -85.29 3.22 -82.07 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000747366644.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.486 kcal (2) G-P(sol) polarization free energy of solvation -85.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.069 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds