Wall clock time and date at job start Tue Mar 31 2020 12:05:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09000 * 109.46863 * 2 1 4 4 S 1.81399 * 109.47430 * 239.99752 * 2 1 3 5 5 C 1.76203 * 102.99895 * 64.99972 * 4 2 1 6 6 C 1.39202 * 119.71408 * 179.97438 * 5 4 2 7 7 C 1.38267 * 119.09606 * 179.97438 * 6 5 4 8 8 C 1.38908 * 118.51046 * 0.02562 * 7 6 5 9 9 C 1.38030 * 119.34185 * 359.97438 * 8 7 6 10 10 N 1.31960 * 120.86050 * 359.72675 * 9 8 7 11 11 C 1.50705 * 109.47050 * 119.99908 * 2 1 3 12 12 O 1.21299 * 119.99726 * 100.00623 * 11 2 1 13 13 N 1.34777 * 119.99695 * 279.99754 * 11 2 1 14 14 C 1.40597 * 119.99674 * 179.97438 * 13 11 2 15 15 C 1.40648 * 126.08199 * 359.97438 * 14 13 11 16 16 N 1.30907 * 108.38289 * 179.77574 * 15 14 13 17 17 N 1.40067 * 108.41135 * 0.38341 * 16 15 14 18 18 C 1.37320 * 126.07294 * 179.87911 * 17 16 15 19 19 H 1.08002 * 120.00430 * 179.69232 * 18 17 16 20 20 C 1.38992 * 119.99664 * 359.41108 * 18 17 16 21 21 N 1.31294 * 120.00157 * 0.27652 * 20 18 17 22 22 Si 1.86803 * 119.99838 * 180.27798 * 20 18 17 23 23 H 1.48504 * 109.47034 * 59.99910 * 22 20 18 24 24 H 1.48490 * 109.47071 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.46993 * 299.99983 * 22 20 18 26 26 C 1.35682 * 126.07675 * 180.02562 * 14 13 11 27 27 H 1.09007 * 109.47268 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47774 * 300.00279 * 1 2 3 29 29 H 1.09005 * 109.47092 * 60.00237 * 1 2 3 30 30 H 1.07996 * 120.44968 * 359.97438 * 6 5 4 31 31 H 1.07997 * 120.74221 * 180.02562 * 7 6 5 32 32 H 1.08008 * 120.33064 * 180.02562 * 8 7 6 33 33 H 1.08005 * 119.56490 * 180.02562 * 9 8 7 34 34 H 0.96997 * 119.99849 * 0.02562 * 13 11 2 35 35 H 1.08000 * 125.80726 * 0.02562 * 15 14 13 36 36 H 0.96996 * 120.00263 * 179.97438 * 21 20 18 37 37 H 1.07994 * 126.25033 * 0.02562 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 16 2.1347 -0.8552 -1.4811 5 6 1.5827 0.1845 -2.7922 6 6 1.8682 -0.1577 -4.1110 7 6 1.4284 0.6671 -5.1299 8 6 0.7156 1.8115 -4.7956 9 6 0.4681 2.0901 -3.4665 10 7 0.8948 1.2819 -2.5147 11 6 2.0323 -0.7104 1.2305 12 8 2.4065 -1.8618 1.1557 13 7 2.0658 -0.0663 2.4139 14 6 2.5339 -0.7292 3.5620 15 6 2.9951 -2.0566 3.6219 16 7 3.3500 -2.3151 4.8552 17 7 3.1222 -1.1708 5.6301 18 6 3.3657 -1.0439 6.9756 19 1 3.1572 -0.1100 7.4764 20 6 3.8752 -2.1191 7.6941 21 7 4.1286 -3.2544 7.0853 22 14 4.1992 -1.9489 9.5259 23 1 2.9308 -1.6193 10.2244 24 1 4.7379 -3.2278 10.0542 25 1 5.1869 -0.8639 9.7551 26 6 2.6203 -0.2025 4.8094 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 2.4254 -1.0552 -4.3352 31 1 1.6346 0.4269 -6.1624 32 1 0.3578 2.4763 -5.5680 33 1 -0.0862 2.9787 -3.2026 34 1 1.7663 0.8543 2.4737 35 1 3.0510 -2.7442 2.7909 36 1 4.4845 -4.0047 7.5866 37 1 2.3421 0.7997 5.1001 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000754229540.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:05:36 Heat of formation + Delta-G solvation = 67.129646 kcal Electronic energy + Delta-G solvation = -22574.626321 eV Core-core repulsion = 19058.571083 eV Total energy + Delta-G solvation = -3516.055238 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.089 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.76850 -40.81061 -40.35862 -35.99017 -35.14236 -34.27655 -33.22439 -32.22443 -32.11399 -29.60281 -26.99841 -25.55271 -24.65719 -24.43100 -22.94395 -21.98134 -21.23178 -19.51700 -19.15642 -17.79972 -17.47359 -17.36926 -17.23758 -16.75257 -16.36488 -16.00397 -15.68311 -15.33186 -15.19584 -15.07135 -14.88842 -14.62654 -14.06255 -13.67661 -13.49608 -13.38399 -13.30304 -12.98345 -12.86170 -12.82000 -12.52046 -12.13893 -11.87659 -11.27928 -11.02476 -10.97739 -10.86988 -10.77346 -10.67981 -10.48205 -10.11389 -8.63377 -8.55679 -8.47152 -6.25073 0.05872 0.24461 0.34280 1.10083 1.21687 1.39825 1.48401 1.56553 1.84289 2.03168 2.25153 2.47791 2.78131 2.86929 3.08822 3.61709 3.69081 3.82598 4.01975 4.02973 4.18442 4.23938 4.42462 4.45085 4.57452 4.65329 4.76661 4.81994 4.99103 5.05069 5.11480 5.15627 5.27706 5.28822 5.40326 5.73420 5.94566 6.28185 6.62129 6.72110 6.80512 7.26013 7.45331 7.66305 8.52066 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.048859 B = 0.002290 C = 0.002223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 572.936497 B =12226.729471 C =12592.807472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.074 4.074 3 H 0.134 0.866 4 S -0.052 6.052 5 C 0.093 3.907 6 C -0.163 4.163 7 C -0.057 4.057 8 C -0.173 4.173 9 C 0.100 3.900 10 N -0.509 5.509 11 C 0.516 3.484 12 O -0.562 6.562 13 N -0.605 5.605 14 C -0.045 4.045 15 C -0.059 4.059 16 N -0.310 5.310 17 N -0.167 5.167 18 C -0.354 4.354 19 H 0.142 0.858 20 C -0.008 4.008 21 N -0.825 5.825 22 Si 1.020 2.980 23 H -0.252 1.252 24 H -0.279 1.279 25 H -0.253 1.253 26 C -0.078 4.078 27 H 0.052 0.948 28 H 0.085 0.915 29 H 0.095 0.905 30 H 0.143 0.857 31 H 0.170 0.830 32 H 0.170 0.830 33 H 0.184 0.816 34 H 0.421 0.579 35 H 0.166 0.834 36 H 0.277 0.723 37 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.386 14.460 -20.584 26.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.207 4.207 3 H 0.152 0.848 4 S 0.190 5.810 5 C -0.155 4.155 6 C -0.189 4.189 7 C -0.084 4.084 8 C -0.196 4.196 9 C -0.060 4.060 10 N -0.223 5.223 11 C 0.301 3.699 12 O -0.441 6.441 13 N -0.250 5.250 14 C -0.152 4.152 15 C -0.234 4.234 16 N -0.142 5.142 17 N 0.064 4.936 18 C -0.485 4.485 19 H 0.160 0.840 20 C -0.220 4.220 21 N -0.453 5.453 22 Si 0.839 3.161 23 H -0.176 1.176 24 H -0.204 1.204 25 H -0.177 1.177 26 C -0.228 4.228 27 H 0.071 0.929 28 H 0.104 0.896 29 H 0.113 0.887 30 H 0.161 0.839 31 H 0.187 0.813 32 H 0.187 0.813 33 H 0.201 0.799 34 H 0.259 0.741 35 H 0.183 0.817 36 H 0.086 0.914 37 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -7.109 11.690 -18.855 23.296 hybrid contribution -0.609 1.464 -0.574 1.686 sum -7.718 13.154 -19.429 24.700 Atomic orbital electron populations 1.21956 0.88844 1.03039 1.05251 1.23189 1.02439 1.03393 0.91646 0.84831 1.86412 1.68813 1.30400 0.95398 1.23279 0.99133 0.96691 0.96381 1.21850 1.03153 1.02614 0.91315 1.21918 0.93320 0.92719 1.00432 1.22500 1.00055 0.98769 0.98249 1.23315 0.95503 0.97721 0.89421 1.68024 1.11867 1.03993 1.38365 1.20208 0.78781 0.86585 0.84301 1.90628 1.49080 1.19007 1.85374 1.42247 1.61978 1.15911 1.04884 1.17297 1.16711 0.93863 0.87295 1.24147 1.06660 0.96647 0.95970 1.78160 1.26443 1.07830 1.01759 1.44854 1.35096 1.06524 1.07081 1.20603 1.45564 1.02477 0.79832 0.84026 1.26918 0.94575 0.93783 1.06686 1.70396 1.33267 1.02694 1.38922 0.84638 0.79789 0.78474 0.73211 1.17640 1.20376 1.17671 1.21995 1.13680 0.97542 0.89594 0.92909 0.89647 0.88676 0.83933 0.81301 0.81262 0.79905 0.74116 0.81726 0.91379 0.79274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.02 9.01 71.98 0.65 -2.38 16 2 C -0.07 -2.00 2.68 29.85 0.08 -1.92 16 3 H 0.13 3.05 8.13 -2.39 -0.02 3.03 16 4 S -0.05 -1.48 20.58 -56.49 -1.16 -2.64 16 5 C 0.09 2.10 6.85 84.83 0.58 2.69 16 6 C -0.16 -2.89 9.84 22.51 0.22 -2.66 16 7 C -0.06 -0.64 10.17 22.44 0.23 -0.41 16 8 C -0.17 -1.67 10.10 22.38 0.23 -1.44 16 9 C 0.10 1.34 11.17 84.62 0.95 2.29 16 10 N -0.51 -10.29 7.44 -192.21 -1.43 -11.72 16 11 C 0.52 18.63 6.97 87.66 0.61 19.24 16 12 O -0.56 -25.62 13.20 -3.09 -0.04 -25.66 16 13 N -0.61 -21.26 5.47 -303.92 -1.66 -22.93 16 14 C -0.05 -2.12 6.90 37.73 0.26 -1.86 16 15 C -0.06 -3.30 10.85 85.42 0.93 -2.38 16 16 N -0.31 -19.04 10.40 -56.47 -0.59 -19.63 16 17 N -0.17 -9.36 3.74 -190.01 -0.71 -10.07 16 18 C -0.35 -18.84 10.25 84.01 0.86 -17.97 16 19 H 0.14 6.48 7.83 -2.91 -0.02 6.45 16 20 C -0.01 -0.42 5.50 84.95 0.47 0.05 16 21 N -0.82 -48.27 11.81 21.66 0.26 -48.02 16 22 Si 1.02 38.83 29.55 68.60 2.03 40.86 16 23 H -0.25 -8.94 7.11 99.48 0.71 -8.23 16 24 H -0.28 -10.56 7.11 99.48 0.71 -9.85 16 25 H -0.25 -8.96 7.11 99.48 0.71 -8.26 16 26 C -0.08 -3.61 11.49 83.37 0.96 -2.65 16 27 H 0.05 1.37 8.14 -2.38 -0.02 1.35 16 28 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 29 H 0.09 2.00 5.95 -2.38 -0.01 1.99 16 30 H 0.14 2.28 8.06 -2.91 -0.02 2.26 16 31 H 0.17 0.79 8.06 -2.91 -0.02 0.76 16 32 H 0.17 0.44 8.06 -2.91 -0.02 0.42 16 33 H 0.18 1.32 8.06 -2.91 -0.02 1.29 16 34 H 0.42 10.71 8.83 -92.71 -0.82 9.90 16 35 H 0.17 9.38 5.92 -2.91 -0.02 9.36 16 36 H 0.28 14.91 8.31 -92.71 -0.77 14.14 16 37 H 0.19 6.84 8.06 -2.91 -0.02 6.82 16 Total: -1.00 -80.15 336.84 4.01 -76.14 By element: Atomic # 1 Polarization: 32.77 SS G_CDS: 0.30 Total: 33.08 kcal Atomic # 6 Polarization: -16.43 SS G_CDS: 7.02 Total: -9.41 kcal Atomic # 7 Polarization: -108.23 SS G_CDS: -4.13 Total: -112.36 kcal Atomic # 8 Polarization: -25.62 SS G_CDS: -0.04 Total: -25.66 kcal Atomic # 14 Polarization: 38.83 SS G_CDS: 2.03 Total: 40.86 kcal Atomic # 16 Polarization: -1.48 SS G_CDS: -1.16 Total: -2.64 kcal Total: -80.15 4.01 -76.14 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000754229540.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.273 kcal (2) G-P(sol) polarization free energy of solvation -80.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.143 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds