Wall clock time and date at job start Tue Mar 31 2020 12:05:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.46760 * 2 1 4 4 S 1.81398 * 109.46961 * 119.99944 * 2 1 3 5 5 C 1.76199 * 102.99948 * 295.00047 * 4 2 1 6 6 C 1.39199 * 119.70970 * 180.02562 * 5 4 2 7 7 C 1.38274 * 119.09329 * 179.97438 * 6 5 4 8 8 C 1.38909 * 118.51181 * 359.97438 * 7 6 5 9 9 C 1.38031 * 119.33836 * 0.25276 * 8 7 6 10 10 N 1.31960 * 120.86239 * 359.45546 * 9 8 7 11 11 C 1.50694 * 109.47030 * 239.99731 * 2 1 3 12 12 O 1.21299 * 120.00463 * 264.99942 * 11 2 1 13 13 N 1.34782 * 119.99911 * 84.99942 * 11 2 1 14 14 C 1.40590 * 119.99922 * 179.97438 * 13 11 2 15 15 C 1.40644 * 126.08477 * 0.03152 * 14 13 11 16 16 N 1.30911 * 108.38855 * 179.97438 * 15 14 13 17 17 N 1.40067 * 108.40732 * 359.97438 * 16 15 14 18 18 C 1.37322 * 126.06711 * 180.02562 * 17 16 15 19 19 H 1.08007 * 119.99335 * 179.97438 * 18 17 16 20 20 C 1.38980 * 120.00149 * 359.97377 * 18 17 16 21 21 N 1.31291 * 120.00420 * 0.02562 * 20 18 17 22 22 Si 1.86810 * 119.99894 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47081 * 59.99783 * 22 20 18 24 24 H 1.48491 * 109.47032 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.46868 * 300.00092 * 22 20 18 26 26 C 1.35689 * 126.08122 * 179.71356 * 14 13 11 27 27 H 1.09007 * 109.47185 * 299.99883 * 1 2 3 28 28 H 1.09000 * 109.47542 * 60.00002 * 1 2 3 29 29 H 1.09004 * 109.47365 * 180.02562 * 1 2 3 30 30 H 1.08006 * 120.45596 * 359.97106 * 6 5 4 31 31 H 1.08004 * 120.73928 * 180.02562 * 7 6 5 32 32 H 1.08002 * 120.32660 * 179.97438 * 8 7 6 33 33 H 1.08000 * 119.56637 * 179.72239 * 9 8 7 34 34 H 0.96999 * 119.99603 * 0.02562 * 13 11 2 35 35 H 1.07995 * 125.80830 * 359.95658 * 15 14 13 36 36 H 0.97001 * 120.00465 * 180.02562 * 21 20 18 37 37 H 1.08000 * 126.24287 * 0.02562 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 16 2.1346 -0.8551 1.4811 5 6 1.5826 0.1847 2.7922 6 6 1.8680 -0.1576 4.1109 7 6 1.4291 0.6678 5.1298 8 6 0.7172 1.8128 4.7954 9 6 0.4657 2.0889 3.4666 10 7 0.9015 1.2861 2.5142 11 6 2.0323 -0.7104 -1.2304 12 8 2.3208 -1.8874 -1.1760 13 7 2.1610 -0.0381 -2.3914 14 6 2.6301 -0.7008 -3.5392 15 6 2.9996 -2.0554 -3.6208 16 7 3.3826 -2.3058 -4.8473 17 7 3.2729 -1.1262 -5.5945 18 6 3.5803 -0.9804 -6.9249 19 1 3.4575 -0.0209 -7.4054 20 6 4.0493 -2.0673 -7.6530 21 7 4.1981 -3.2337 -7.0690 22 14 4.4682 -1.8687 -9.4626 23 1 5.5357 -0.8476 -9.6144 24 1 4.9441 -3.1661 -10.0058 25 1 3.2583 -1.4341 -10.2059 26 6 2.8013 -0.1487 -4.7668 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 2.4245 -1.0556 4.3353 31 1 1.6360 0.4280 6.1623 32 1 0.3602 2.4780 5.5678 33 1 -0.0913 2.9757 3.2027 34 1 1.9306 0.9031 -2.4349 35 1 2.9723 -2.7677 -2.8095 36 1 4.5258 -3.9923 -7.5770 37 1 2.6026 0.8774 -5.0388 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000754229541.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:05:40 Heat of formation + Delta-G solvation = 89.839968 kcal Electronic energy + Delta-G solvation = -22572.212637 eV Core-core repulsion = 19057.142192 eV Total energy + Delta-G solvation = -3515.070445 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.089 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.14770 -39.96393 -38.66250 -34.25220 -33.56185 -33.01845 -32.36992 -31.47833 -30.20900 -27.76643 -25.23798 -24.20253 -23.96674 -23.74904 -21.11311 -20.35411 -19.43457 -18.42987 -17.53669 -16.62788 -16.52722 -16.21554 -15.68739 -15.43584 -14.95355 -14.82316 -14.47059 -14.09821 -14.04329 -13.66523 -13.32916 -13.23397 -12.89645 -12.72714 -12.28777 -11.94314 -11.78248 -11.65046 -11.41215 -11.23589 -10.95530 -10.55809 -10.33260 -10.28524 -10.18068 -9.98452 -9.78947 -9.23949 -9.16675 -8.80756 -8.05882 -7.65650 -6.71524 -6.55102 -4.22652 0.72442 0.95962 1.23383 2.07710 2.79687 3.03303 3.05180 3.09378 3.42826 3.55339 3.67442 3.87363 4.25922 4.40740 4.53027 4.66805 4.79431 4.82585 4.89713 4.96592 4.99767 5.02838 5.19599 5.39374 5.60427 5.67278 5.77125 5.86768 6.09954 6.24215 6.31294 6.44275 6.87640 6.94916 7.08978 7.23289 7.48553 7.85517 8.12617 8.26691 8.59960 8.79868 9.37826 9.67020 10.40800 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.048087 B = 0.002290 C = 0.002229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 582.140829 B =12221.627136 C =12561.339837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.094 4.094 3 H 0.114 0.886 4 S 0.006 5.994 5 C 0.110 3.890 6 C -0.153 4.153 7 C -0.058 4.058 8 C -0.187 4.187 9 C 0.113 3.887 10 N -0.491 5.491 11 C 0.516 3.484 12 O -0.521 6.521 13 N -0.615 5.615 14 C -0.061 4.061 15 C -0.032 4.032 16 N -0.260 5.260 17 N -0.142 5.142 18 C -0.323 4.323 19 H 0.116 0.884 20 C 0.046 3.954 21 N -0.769 5.769 22 Si 0.935 3.065 23 H -0.267 1.267 24 H -0.277 1.277 25 H -0.267 1.267 26 C -0.083 4.083 27 H 0.083 0.917 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.139 0.861 31 H 0.137 0.863 32 H 0.134 0.866 33 H 0.157 0.843 34 H 0.398 0.602 35 H 0.176 0.824 36 H 0.276 0.724 37 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.908 11.002 19.550 23.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.227 4.227 3 H 0.132 0.868 4 S 0.248 5.752 5 C -0.138 4.138 6 C -0.180 4.180 7 C -0.085 4.085 8 C -0.211 4.211 9 C -0.047 4.047 10 N -0.204 5.204 11 C 0.300 3.700 12 O -0.398 6.398 13 N -0.257 5.257 14 C -0.167 4.167 15 C -0.207 4.207 16 N -0.091 5.091 17 N 0.091 4.909 18 C -0.456 4.456 19 H 0.133 0.867 20 C -0.171 4.171 21 N -0.396 5.396 22 Si 0.759 3.241 23 H -0.192 1.192 24 H -0.201 1.201 25 H -0.192 1.192 26 C -0.234 4.234 27 H 0.102 0.898 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.157 0.843 31 H 0.155 0.845 32 H 0.152 0.848 33 H 0.174 0.826 34 H 0.231 0.769 35 H 0.193 0.807 36 H 0.086 0.914 37 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -5.697 8.144 17.751 20.344 hybrid contribution -0.830 2.456 0.640 2.670 sum -6.527 10.599 18.391 22.207 Atomic orbital electron populations 1.21976 0.90312 1.03649 1.03890 1.23366 1.01650 1.03486 0.94194 0.86819 1.86261 1.67220 1.28066 0.93638 1.23579 0.97227 0.95963 0.97050 1.21644 1.02889 1.01874 0.91565 1.21493 0.94312 0.93222 0.99520 1.22049 1.02040 0.99021 0.97981 1.22748 0.95491 0.97426 0.89006 1.68138 1.11511 1.03812 1.36942 1.19417 0.79994 0.87270 0.83356 1.90639 1.49745 1.15360 1.84068 1.42349 1.63183 1.12455 1.07681 1.17246 1.19137 0.94007 0.86269 1.24114 1.05599 0.94339 0.96651 1.78266 1.25048 1.04193 1.01596 1.44548 1.34590 1.04747 1.07019 1.19824 1.45632 0.98764 0.81331 0.86654 1.25644 0.95817 0.94627 1.01040 1.70204 1.32841 1.00055 1.36489 0.85893 0.79390 0.78410 0.80441 1.19159 1.20129 1.19157 1.21247 1.15853 0.95665 0.90601 0.89840 0.91309 0.91324 0.84285 0.84483 0.84796 0.82578 0.76859 0.80703 0.91379 0.83663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.69 9.01 37.16 0.33 -1.35 16 2 C -0.09 -1.29 2.68 -27.89 -0.07 -1.37 16 3 H 0.11 1.38 8.13 -51.92 -0.42 0.96 16 4 S 0.01 0.08 20.64 -107.50 -2.22 -2.14 16 5 C 0.11 1.29 6.85 -16.92 -0.12 1.17 16 6 C -0.15 -1.45 9.84 -39.21 -0.39 -1.84 16 7 C -0.06 -0.42 10.17 -39.32 -0.40 -0.82 16 8 C -0.19 -1.29 10.11 -39.41 -0.40 -1.68 16 9 C 0.11 0.94 11.17 -17.57 -0.20 0.75 16 10 N -0.49 -5.43 7.45 -12.11 -0.09 -5.52 16 11 C 0.52 9.26 6.92 -10.99 -0.08 9.18 16 12 O -0.52 -11.38 13.29 5.54 0.07 -11.30 16 13 N -0.61 -11.07 5.47 -10.00 -0.05 -11.12 16 14 C -0.06 -1.42 6.90 -83.84 -0.58 -2.00 16 15 C -0.03 -0.84 10.85 -17.04 -0.18 -1.03 16 16 N -0.26 -7.64 10.40 30.80 0.32 -7.32 16 17 N -0.14 -3.91 3.74 -11.41 -0.04 -3.96 16 18 C -0.32 -8.59 10.25 -14.82 -0.15 -8.74 16 19 H 0.12 2.72 7.83 -52.48 -0.41 2.31 16 20 C 0.05 1.19 5.50 -17.51 -0.10 1.10 16 21 N -0.77 -21.65 11.81 55.49 0.66 -21.00 16 22 Si 0.93 18.99 29.55 -169.99 -5.02 13.97 16 23 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 24 H -0.28 -5.57 7.11 56.52 0.40 -5.16 16 25 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 26 C -0.08 -1.95 11.49 -16.39 -0.19 -2.14 16 27 H 0.08 0.95 5.96 -51.93 -0.31 0.64 16 28 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.14 1.13 8.06 -52.48 -0.42 0.71 16 31 H 0.14 0.61 8.06 -52.48 -0.42 0.18 16 32 H 0.13 0.55 8.06 -52.49 -0.42 0.12 16 33 H 0.16 0.87 8.06 -52.49 -0.42 0.45 16 34 H 0.40 5.54 8.83 -40.82 -0.36 5.18 16 35 H 0.18 4.64 5.92 -52.49 -0.31 4.33 16 36 H 0.28 7.11 8.31 -40.82 -0.34 6.77 16 37 H 0.15 2.85 8.06 -52.49 -0.42 2.43 16 LS Contribution 336.96 15.07 5.08 5.08 Total: -1.00 -34.34 336.96 -7.72 -42.06 By element: Atomic # 1 Polarization: 13.93 SS G_CDS: -3.91 Total: 10.02 kcal Atomic # 6 Polarization: -6.25 SS G_CDS: -2.51 Total: -8.76 kcal Atomic # 7 Polarization: -49.71 SS G_CDS: 0.79 Total: -48.92 kcal Atomic # 8 Polarization: -11.38 SS G_CDS: 0.07 Total: -11.30 kcal Atomic # 14 Polarization: 18.99 SS G_CDS: -5.02 Total: 13.97 kcal Atomic # 16 Polarization: 0.08 SS G_CDS: -2.22 Total: -2.14 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -34.34 -7.72 -42.06 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000754229541.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.898 kcal (2) G-P(sol) polarization free energy of solvation -34.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.059 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds