Wall clock time and date at job start Tue Mar 31 2020 12:42:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 C 1.76203 * 102.99614 * 2 1 4 4 N 1.31185 * 125.54321 * 359.97438 * 3 2 1 5 5 N 1.40417 * 106.92411 * 179.74903 * 4 3 2 6 6 H 0.96998 * 126.76947 * 180.29033 * 5 4 3 7 7 C 1.34874 * 106.45843 * 0.40649 * 5 4 3 8 8 N 1.38779 * 125.98604 * 179.85439 * 7 5 4 9 9 C 1.34784 * 119.99895 * 359.71594 * 8 7 5 10 10 O 1.21268 * 119.99936 * 359.97438 * 9 8 7 11 11 C 1.50701 * 119.99890 * 179.97438 * 9 8 7 12 12 C 1.50697 * 109.47024 * 180.02562 * 11 9 8 13 13 C 1.37635 * 120.13029 * 265.00398 * 12 11 9 14 14 C 1.38616 * 120.25180 * 180.29925 * 13 12 11 15 15 C 1.38657 * 120.49769 * 359.43991 * 14 13 12 16 16 C 1.37599 * 120.24996 * 0.55619 * 15 14 13 17 17 C 1.40698 * 120.12726 * 85.02044 * 12 11 9 18 18 C 1.41401 * 120.24306 * 359.95711 * 17 12 11 19 19 H 1.07996 * 120.00140 * 329.78968 * 18 17 12 20 20 C 1.39943 * 119.99611 * 149.79577 * 18 17 12 21 21 N 1.30828 * 120.00177 * 162.08912 * 20 18 17 22 22 Si 1.86803 * 120.00186 * 342.08044 * 20 18 17 23 23 H 1.48499 * 109.47049 * 95.39710 * 22 20 18 24 24 H 1.48502 * 109.46957 * 215.39592 * 22 20 18 25 25 H 1.48500 * 109.46884 * 335.39299 * 22 20 18 26 26 N 1.31519 * 108.02639 * 359.59220 * 7 5 4 27 27 H 1.09001 * 109.47851 * 299.99878 * 1 2 3 28 28 H 1.09002 * 109.47223 * 60.00282 * 1 2 3 29 29 H 1.09007 * 109.46723 * 180.02562 * 1 2 3 30 30 H 0.97000 * 120.00534 * 179.71843 * 8 7 5 31 31 H 1.08999 * 109.47141 * 60.00010 * 11 9 8 32 32 H 1.09003 * 109.46955 * 300.00132 * 11 9 8 33 33 H 1.08001 * 119.87405 * 0.02562 * 13 12 11 34 34 H 1.07997 * 119.74655 * 179.69995 * 14 13 12 35 35 H 1.07996 * 119.87456 * 180.30205 * 15 14 13 36 36 H 1.07999 * 120.12771 * 179.75037 * 16 15 14 37 37 H 0.96989 * 120.00516 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7169 0.0000 4 7 1.3417 2.7000 -0.0005 5 7 2.0777 3.8958 0.0056 6 1 1.7204 4.7975 0.0107 7 6 3.3796 3.5432 0.0003 8 7 4.4602 4.4139 0.0006 9 6 4.2527 5.7456 0.0008 10 8 3.1216 6.1830 0.0003 11 6 5.4262 6.6911 0.0018 12 6 4.9259 8.1126 0.0025 13 6 4.7947 8.7995 -1.1830 14 6 4.3406 10.1092 -1.1847 15 6 4.0028 10.7384 0.0038 16 6 4.1260 10.0711 1.2008 17 6 4.5915 8.7430 1.2151 18 6 4.7217 8.0471 2.4391 19 1 4.5949 6.9749 2.4669 20 6 5.0148 8.7477 3.6145 21 7 4.7954 8.1928 4.7788 22 14 5.7195 10.4752 3.5212 23 1 4.6189 11.4656 3.6357 24 1 6.6844 10.6768 4.6318 25 1 6.4154 10.6563 2.2219 26 7 3.4454 2.2296 0.0005 27 1 -0.3635 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0278 0.0005 30 1 5.3650 4.0641 0.0006 31 1 6.0320 6.5192 -0.8879 32 1 6.0310 6.5187 0.8921 33 1 5.0506 8.3177 -2.1150 34 1 4.2454 10.6421 -2.1192 35 1 3.6455 11.7574 -0.0097 36 1 3.8661 10.5644 2.1257 37 1 4.9989 8.6782 5.5935 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000777375538.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:42:37 Heat of formation + Delta-G solvation = 72.508457 kcal Electronic energy + Delta-G solvation = -23349.620362 eV Core-core repulsion = 19833.798366 eV Total energy + Delta-G solvation = -3515.821995 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.089 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.14220 -39.83276 -37.84800 -35.03336 -33.72016 -32.52059 -32.12168 -30.56358 -30.40930 -28.93740 -27.29081 -25.07775 -23.52080 -22.28768 -21.50678 -21.09307 -19.73776 -18.17408 -17.51284 -17.31752 -16.63964 -16.21988 -16.17117 -15.76030 -15.07014 -14.55236 -14.35705 -14.00977 -13.96900 -13.77788 -13.63828 -12.95528 -12.82863 -12.32589 -12.23676 -12.04787 -11.73270 -11.51270 -11.26772 -10.95004 -10.89804 -10.86681 -10.51788 -10.37965 -10.20000 -9.96682 -9.84489 -9.70921 -9.24398 -8.99239 -7.81294 -7.75684 -7.66723 -7.05463 -4.62872 1.04093 1.49872 1.92548 2.20888 2.38478 2.52094 2.60094 3.04236 3.06290 3.13184 3.23651 3.38564 3.88668 4.38405 4.67427 4.91335 4.93102 4.97163 5.32518 5.48728 5.56267 5.58646 5.66784 5.90743 5.93058 6.04849 6.07931 6.23500 6.41221 6.58474 6.81467 6.92927 7.06650 7.29144 7.30334 7.51271 7.61166 7.75264 7.96863 7.98701 8.01439 8.21307 8.52160 8.68383 9.96220 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.019521 B = 0.003205 C = 0.002950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1433.972711 B = 8733.793005 C = 9490.599973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 S 0.020 5.980 3 C 0.220 3.780 4 N -0.321 5.321 5 N -0.464 5.464 6 H 0.454 0.546 7 C 0.524 3.476 8 N -0.635 5.635 9 C 0.527 3.473 10 O -0.503 6.503 11 C -0.064 4.064 12 C -0.181 4.181 13 C -0.063 4.063 14 C -0.243 4.243 15 C -0.076 4.076 16 C -0.232 4.232 17 C 0.111 3.889 18 C -0.447 4.447 19 H 0.087 0.913 20 C 0.085 3.915 21 N -0.804 5.804 22 Si 0.911 3.089 23 H -0.271 1.271 24 H -0.290 1.290 25 H -0.243 1.243 26 N -0.545 5.545 27 H 0.088 0.912 28 H 0.087 0.913 29 H 0.112 0.888 30 H 0.433 0.567 31 H 0.094 0.906 32 H 0.114 0.886 33 H 0.093 0.907 34 H 0.093 0.907 35 H 0.093 0.907 36 H 0.100 0.900 37 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.907 -9.954 -7.728 12.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.320 4.320 2 S 0.244 5.756 3 C -0.172 4.172 4 N -0.158 5.158 5 N -0.194 5.194 6 H 0.309 0.691 7 C 0.156 3.844 8 N -0.291 5.291 9 C 0.316 3.684 10 O -0.373 6.373 11 C -0.104 4.104 12 C -0.183 4.183 13 C -0.082 4.082 14 C -0.262 4.262 15 C -0.094 4.094 16 C -0.251 4.251 17 C 0.108 3.892 18 C -0.475 4.475 19 H 0.105 0.895 20 C -0.135 4.135 21 N -0.427 5.427 22 Si 0.737 3.263 23 H -0.197 1.197 24 H -0.218 1.218 25 H -0.166 1.166 26 N -0.284 5.284 27 H 0.107 0.893 28 H 0.106 0.894 29 H 0.130 0.870 30 H 0.273 0.727 31 H 0.112 0.888 32 H 0.132 0.868 33 H 0.111 0.889 34 H 0.112 0.888 35 H 0.112 0.888 36 H 0.118 0.882 37 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -1.452 -10.746 -7.427 13.143 hybrid contribution -0.288 2.457 0.281 2.490 sum -1.740 -8.289 -7.146 11.082 Atomic orbital electron populations 1.23661 0.94674 1.06808 1.06882 1.85361 1.05573 0.91606 1.93021 1.25627 0.89397 1.00379 1.01757 1.78301 1.17670 0.89226 1.30574 1.48324 1.03021 1.10104 1.58001 0.69075 1.20443 0.82043 0.87952 0.93981 1.43207 1.07504 1.04965 1.73388 1.22004 0.93225 0.80109 0.73054 1.90515 1.24794 1.75703 1.46289 1.20293 0.93774 0.91651 1.04634 1.18934 1.11925 0.93680 0.93775 1.20448 0.97700 0.94421 0.95588 1.20352 1.13143 0.96252 0.96475 1.20642 0.97915 0.97688 0.93153 1.21024 1.10291 0.97251 0.96508 1.17469 0.88105 0.91121 0.92524 1.19401 1.41560 0.96685 0.89840 0.89509 1.26175 0.92578 1.00164 0.94546 1.69695 1.34295 1.39672 0.99068 0.86318 0.79422 0.81284 0.79260 1.19683 1.21795 1.16574 1.70629 1.22859 1.03073 1.31824 0.89305 0.89377 0.86983 0.72716 0.88830 0.86812 0.88897 0.88834 0.88850 0.88192 0.90338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 10.37 101.05 1.05 -0.22 16 2 S 0.02 0.23 22.81 -107.50 -2.45 -2.22 16 3 C 0.22 3.51 8.27 -90.98 -0.75 2.76 16 4 N -0.32 -5.40 12.34 30.13 0.37 -5.03 16 5 N -0.46 -8.10 7.04 30.09 0.21 -7.89 16 6 H 0.45 8.09 6.47 -182.36 -1.18 6.91 16 7 C 0.52 8.75 8.83 -320.37 -2.83 5.92 16 8 N -0.64 -9.11 5.40 -12.75 -0.07 -9.18 16 9 C 0.53 8.93 7.40 -10.98 -0.08 8.85 16 10 O -0.50 -10.27 13.56 5.57 0.08 -10.19 16 11 C -0.06 -1.04 5.19 -29.04 -0.15 -1.19 16 12 C -0.18 -3.74 4.43 -103.92 -0.46 -4.20 16 13 C -0.06 -1.24 9.66 -39.66 -0.38 -1.62 16 14 C -0.24 -4.85 10.05 -39.29 -0.39 -5.24 16 15 C -0.08 -1.60 10.02 -39.66 -0.40 -2.00 16 16 C -0.23 -5.43 7.17 -38.87 -0.28 -5.70 16 17 C 0.11 2.63 5.10 -106.82 -0.54 2.09 16 18 C -0.45 -11.25 8.55 -37.74 -0.32 -11.57 16 19 H 0.09 2.28 7.00 -52.49 -0.37 1.92 16 20 C 0.09 2.13 5.41 -17.34 -0.09 2.03 16 21 N -0.80 -20.69 13.93 55.55 0.77 -19.91 16 22 Si 0.91 19.91 24.52 -169.99 -4.17 15.74 16 23 H -0.27 -5.85 6.71 56.52 0.38 -5.48 16 24 H -0.29 -6.14 7.11 56.52 0.40 -5.74 16 25 H -0.24 -5.36 6.86 56.52 0.39 -4.97 16 26 N -0.54 -9.13 11.25 -14.10 -0.16 -9.29 16 27 H 0.09 0.79 8.14 -51.92 -0.42 0.37 16 28 H 0.09 0.76 8.14 -51.92 -0.42 0.33 16 29 H 0.11 0.62 8.14 -51.92 -0.42 0.20 16 30 H 0.43 4.66 8.82 -40.82 -0.36 4.30 16 31 H 0.09 1.14 8.05 -51.93 -0.42 0.72 16 32 H 0.11 1.82 7.13 -51.93 -0.37 1.44 16 33 H 0.09 1.53 8.06 -52.49 -0.42 1.11 16 34 H 0.09 1.63 8.06 -52.49 -0.42 1.21 16 35 H 0.09 1.72 8.06 -52.49 -0.42 1.30 16 36 H 0.10 2.36 4.77 -52.49 -0.25 2.11 16 37 H 0.29 6.70 8.30 -40.82 -0.34 6.36 16 LS Contribution 331.11 15.07 4.99 4.99 Total: -1.00 -30.27 331.11 -10.72 -40.99 By element: Atomic # 1 Polarization: 16.74 SS G_CDS: -4.65 Total: 12.09 kcal Atomic # 6 Polarization: -4.46 SS G_CDS: -5.64 Total: -10.10 kcal Atomic # 7 Polarization: -52.43 SS G_CDS: 1.13 Total: -51.30 kcal Atomic # 8 Polarization: -10.27 SS G_CDS: 0.08 Total: -10.19 kcal Atomic # 14 Polarization: 19.91 SS G_CDS: -4.17 Total: 15.74 kcal Atomic # 16 Polarization: 0.23 SS G_CDS: -2.45 Total: -2.22 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -30.27 -10.72 -40.99 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777375538.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.503 kcal (2) G-P(sol) polarization free energy of solvation -30.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.994 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds