Wall clock time and date at job start Tue Mar 31 2020 12:42:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 C 1.76203 * 102.99614 * 2 1 4 4 N 1.31185 * 125.54321 * 359.97438 * 3 2 1 5 5 N 1.40417 * 106.92411 * 179.74903 * 4 3 2 6 6 H 0.96998 * 126.76947 * 180.29033 * 5 4 3 7 7 C 1.34874 * 106.45843 * 0.40649 * 5 4 3 8 8 N 1.38779 * 125.98604 * 179.85439 * 7 5 4 9 9 C 1.34784 * 119.99895 * 359.71594 * 8 7 5 10 10 O 1.21268 * 119.99936 * 359.97438 * 9 8 7 11 11 C 1.50701 * 119.99890 * 179.97438 * 9 8 7 12 12 C 1.50697 * 109.47024 * 180.02562 * 11 9 8 13 13 C 1.37635 * 120.13029 * 265.00398 * 12 11 9 14 14 C 1.38616 * 120.25180 * 180.29925 * 13 12 11 15 15 C 1.38657 * 120.49769 * 359.43991 * 14 13 12 16 16 C 1.37599 * 120.24996 * 0.55619 * 15 14 13 17 17 C 1.40698 * 120.12726 * 85.02044 * 12 11 9 18 18 C 1.41401 * 120.24306 * 359.95711 * 17 12 11 19 19 H 1.07996 * 120.00140 * 329.78968 * 18 17 12 20 20 C 1.39943 * 119.99611 * 149.79577 * 18 17 12 21 21 N 1.30828 * 120.00177 * 162.08912 * 20 18 17 22 22 Si 1.86803 * 120.00186 * 342.08044 * 20 18 17 23 23 H 1.48499 * 109.47049 * 95.39710 * 22 20 18 24 24 H 1.48502 * 109.46957 * 215.39592 * 22 20 18 25 25 H 1.48500 * 109.46884 * 335.39299 * 22 20 18 26 26 N 1.31519 * 108.02639 * 359.59220 * 7 5 4 27 27 H 1.09001 * 109.47851 * 299.99878 * 1 2 3 28 28 H 1.09002 * 109.47223 * 60.00282 * 1 2 3 29 29 H 1.09007 * 109.46723 * 180.02562 * 1 2 3 30 30 H 0.97000 * 120.00534 * 179.71843 * 8 7 5 31 31 H 1.08999 * 109.47141 * 60.00010 * 11 9 8 32 32 H 1.09003 * 109.46955 * 300.00132 * 11 9 8 33 33 H 1.08001 * 119.87405 * 0.02562 * 13 12 11 34 34 H 1.07997 * 119.74655 * 179.69995 * 14 13 12 35 35 H 1.07996 * 119.87456 * 180.30205 * 15 14 13 36 36 H 1.07999 * 120.12771 * 179.75037 * 16 15 14 37 37 H 0.96989 * 120.00516 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7169 0.0000 4 7 1.3417 2.7000 -0.0005 5 7 2.0777 3.8958 0.0056 6 1 1.7204 4.7975 0.0107 7 6 3.3796 3.5432 0.0003 8 7 4.4602 4.4139 0.0006 9 6 4.2527 5.7456 0.0008 10 8 3.1216 6.1830 0.0003 11 6 5.4262 6.6911 0.0018 12 6 4.9259 8.1126 0.0025 13 6 4.7947 8.7995 -1.1830 14 6 4.3406 10.1092 -1.1847 15 6 4.0028 10.7384 0.0038 16 6 4.1260 10.0711 1.2008 17 6 4.5915 8.7430 1.2151 18 6 4.7217 8.0471 2.4391 19 1 4.5949 6.9749 2.4669 20 6 5.0148 8.7477 3.6145 21 7 4.7954 8.1928 4.7788 22 14 5.7195 10.4752 3.5212 23 1 4.6189 11.4656 3.6357 24 1 6.6844 10.6768 4.6318 25 1 6.4154 10.6563 2.2219 26 7 3.4454 2.2296 0.0005 27 1 -0.3635 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0278 0.0005 30 1 5.3650 4.0641 0.0006 31 1 6.0320 6.5192 -0.8879 32 1 6.0310 6.5187 0.8921 33 1 5.0506 8.3177 -2.1150 34 1 4.2454 10.6421 -2.1192 35 1 3.6455 11.7574 -0.0097 36 1 3.8661 10.5644 2.1257 37 1 4.9989 8.6782 5.5935 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000777375538.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:42:36 Heat of formation + Delta-G solvation = 54.896071 kcal Electronic energy + Delta-G solvation = -23350.384092 eV Core-core repulsion = 19833.798366 eV Total energy + Delta-G solvation = -3516.585726 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.089 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.40948 -41.22137 -39.46173 -36.36413 -35.50947 -33.89785 -33.51651 -32.20453 -31.74657 -29.71120 -28.76219 -26.80040 -24.81086 -23.60851 -23.15024 -22.45049 -21.28389 -19.47596 -19.27682 -18.57883 -17.96412 -17.51703 -17.38267 -17.33238 -16.50011 -16.17723 -15.56452 -15.50286 -15.30329 -15.23155 -14.57306 -14.44301 -13.91184 -13.77679 -13.64407 -13.49906 -13.18780 -12.97267 -12.72039 -12.61311 -12.54273 -12.02636 -11.90889 -11.78570 -11.55969 -11.48753 -11.40673 -11.25680 -10.99449 -10.25181 -9.41944 -9.35089 -8.88746 -8.79932 -6.48574 0.03209 0.20252 0.65145 0.87673 0.95629 1.09936 1.27516 1.31495 1.41326 1.48953 1.77509 2.06776 2.11971 2.63049 3.41621 3.48123 3.78188 4.15645 4.25256 4.28687 4.29899 4.36785 4.44301 4.54712 4.61445 4.71365 4.90839 4.91167 4.94631 4.99613 5.14841 5.34615 5.62351 5.77603 5.85753 5.92884 5.97864 6.03441 6.25894 6.43612 6.65739 6.75784 6.77644 6.89151 8.18536 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.019521 B = 0.003205 C = 0.002950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1433.972711 B = 8733.793005 C = 9490.599973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 S 0.032 5.968 3 C 0.207 3.793 4 N -0.336 5.336 5 N -0.476 5.476 6 H 0.450 0.550 7 C 0.515 3.485 8 N -0.616 5.616 9 C 0.531 3.469 10 O -0.542 6.542 11 C -0.063 4.063 12 C -0.179 4.179 13 C -0.071 4.071 14 C -0.231 4.231 15 C -0.089 4.089 16 C -0.257 4.257 17 C 0.087 3.913 18 C -0.470 4.470 19 H 0.061 0.939 20 C 0.049 3.951 21 N -0.851 5.851 22 Si 0.961 3.039 23 H -0.272 1.272 24 H -0.281 1.281 25 H -0.246 1.246 26 N -0.553 5.553 27 H 0.084 0.916 28 H 0.088 0.912 29 H 0.148 0.852 30 H 0.450 0.550 31 H 0.144 0.856 32 H 0.114 0.886 33 H 0.133 0.867 34 H 0.127 0.873 35 H 0.118 0.882 36 H 0.088 0.912 37 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.350 -10.279 -10.306 14.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.315 4.315 2 S 0.256 5.744 3 C -0.183 4.183 4 N -0.173 5.173 5 N -0.206 5.206 6 H 0.304 0.696 7 C 0.147 3.853 8 N -0.273 5.273 9 C 0.321 3.679 10 O -0.415 6.415 11 C -0.102 4.102 12 C -0.180 4.180 13 C -0.089 4.089 14 C -0.250 4.250 15 C -0.107 4.107 16 C -0.276 4.276 17 C 0.084 3.916 18 C -0.500 4.500 19 H 0.079 0.921 20 C -0.165 4.165 21 N -0.478 5.478 22 Si 0.786 3.214 23 H -0.198 1.198 24 H -0.208 1.208 25 H -0.169 1.169 26 N -0.293 5.293 27 H 0.103 0.897 28 H 0.107 0.893 29 H 0.166 0.834 30 H 0.293 0.707 31 H 0.162 0.838 32 H 0.132 0.868 33 H 0.150 0.850 34 H 0.145 0.855 35 H 0.136 0.864 36 H 0.106 0.894 37 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -0.857 -11.099 -10.015 14.974 hybrid contribution -0.552 2.471 0.832 2.665 sum -1.409 -8.629 -9.183 12.679 Atomic orbital electron populations 1.23819 0.91941 1.09011 1.06685 1.85329 1.08472 0.88447 1.92172 1.26472 0.89006 1.02203 1.00625 1.78268 1.18090 0.89228 1.31711 1.48356 1.03499 1.10165 1.58610 0.69593 1.20695 0.82280 0.88353 0.93960 1.42969 1.07932 1.04034 1.72344 1.22050 0.92743 0.80776 0.72284 1.90510 1.26212 1.76524 1.48210 1.20387 0.93656 0.89091 1.07097 1.19403 1.09898 0.95592 0.93151 1.20939 0.96808 0.94465 0.96666 1.20890 1.10319 0.96507 0.97288 1.20992 0.97849 0.99026 0.92795 1.21155 1.11533 0.97670 0.97253 1.17707 0.88914 0.91715 0.93240 1.19341 1.43931 0.95598 0.91125 0.92134 1.26767 0.92699 1.02848 0.94208 1.69741 1.37075 1.41266 0.99685 0.85544 0.78811 0.78005 0.79073 1.19766 1.20791 1.16917 1.70667 1.23397 1.02960 1.32246 0.89719 0.89318 0.83412 0.70684 0.83784 0.86776 0.84956 0.85512 0.86390 0.89376 0.89894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.16 10.37 113.37 1.18 -0.98 16 2 S 0.03 0.70 22.81 -56.49 -1.29 -0.59 16 3 C 0.21 6.52 8.27 180.47 1.49 8.01 16 4 N -0.34 -11.32 12.34 -58.59 -0.72 -12.04 16 5 N -0.48 -16.87 7.04 -58.70 -0.41 -17.28 16 6 H 0.45 16.53 6.47 -213.12 -1.38 15.15 16 7 C 0.52 17.09 8.83 260.63 2.30 19.40 16 8 N -0.62 -17.14 5.40 -312.64 -1.69 -18.82 16 9 C 0.53 17.58 7.40 87.66 0.65 18.23 16 10 O -0.54 -22.21 13.56 -2.99 -0.04 -22.25 16 11 C -0.06 -1.92 5.19 29.10 0.15 -1.77 16 12 C -0.18 -7.06 4.43 -19.41 -0.09 -7.14 16 13 C -0.07 -2.50 9.66 22.22 0.21 -2.28 16 14 C -0.23 -8.32 10.05 22.46 0.23 -8.10 16 15 C -0.09 -3.54 10.02 22.22 0.22 -3.32 16 16 C -0.26 -11.96 7.17 22.73 0.16 -11.80 16 17 C 0.09 4.13 5.10 -21.29 -0.11 4.02 16 18 C -0.47 -24.58 8.55 23.46 0.20 -24.38 16 19 H 0.06 3.36 7.00 -2.91 -0.02 3.34 16 20 C 0.05 2.55 5.41 85.26 0.46 3.01 16 21 N -0.85 -45.91 13.93 21.83 0.30 -45.61 16 22 Si 0.96 41.96 24.52 68.60 1.68 43.64 16 23 H -0.27 -11.69 6.71 99.48 0.67 -11.02 16 24 H -0.28 -11.60 7.11 99.48 0.71 -10.90 16 25 H -0.25 -10.67 6.86 99.48 0.68 -9.99 16 26 N -0.55 -18.27 11.25 -198.54 -2.23 -20.50 16 27 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 28 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 29 H 0.15 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.45 8.97 8.82 -92.71 -0.82 8.16 16 31 H 0.14 2.88 8.05 -2.39 -0.02 2.86 16 32 H 0.11 3.54 7.13 -2.39 -0.02 3.53 16 33 H 0.13 3.63 8.06 -2.91 -0.02 3.60 16 34 H 0.13 3.73 8.06 -2.91 -0.02 3.71 16 35 H 0.12 4.04 8.06 -2.91 -0.02 4.02 16 36 H 0.09 4.22 4.77 -2.91 -0.01 4.20 16 37 H 0.29 14.26 8.30 -92.72 -0.77 13.50 16 Total: -1.00 -68.14 331.11 1.56 -66.58 By element: Atomic # 1 Polarization: 35.09 SS G_CDS: -1.11 Total: 33.98 kcal Atomic # 6 Polarization: -14.16 SS G_CDS: 7.06 Total: -7.10 kcal Atomic # 7 Polarization: -109.51 SS G_CDS: -4.75 Total: -114.26 kcal Atomic # 8 Polarization: -22.21 SS G_CDS: -0.04 Total: -22.25 kcal Atomic # 14 Polarization: 41.96 SS G_CDS: 1.68 Total: 43.64 kcal Atomic # 16 Polarization: 0.70 SS G_CDS: -1.29 Total: -0.59 kcal Total: -68.14 1.56 -66.58 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777375538.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.478 kcal (2) G-P(sol) polarization free energy of solvation -68.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.582 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds