Wall clock time and date at job start Tue Mar 31 2020 12:46:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86790 * 120.00291 * 2 1 4 4 H 1.48503 * 109.47092 * 239.99848 * 3 2 1 5 5 H 1.48506 * 109.47148 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47706 * 119.99874 * 3 2 1 7 7 C 1.37884 * 119.99565 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99832 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00204 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.46857 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.46965 * 179.97438 * 10 9 7 12 12 O 1.45206 * 109.47129 * 180.02562 * 11 10 9 13 13 C 1.34841 * 116.99711 * 180.02562 * 12 11 10 14 14 O 1.21593 * 120.00202 * 0.02562 * 13 12 11 15 15 C 1.46742 * 119.99685 * 180.02562 * 13 12 11 16 16 C 1.36470 * 126.78111 * 359.68502 * 15 13 12 17 17 N 1.35400 * 109.76215 * 179.82869 * 16 15 13 18 18 H 0.97003 * 124.77666 * 180.14177 * 17 16 15 19 19 C 1.37977 * 110.44965 * 0.45270 * 17 16 15 20 20 C 1.39121 * 133.17892 * 179.72754 * 19 17 16 21 21 C 1.37765 * 119.93329 * 179.97438 * 20 19 17 22 22 N 1.48021 * 119.68823 * 180.02562 * 21 20 19 23 23 O 1.21800 * 119.99686 * 359.97438 * 22 21 20 24 24 O 1.21796 * 120.00117 * 180.02562 * 22 21 20 25 25 C 1.38756 * 120.62895 * 0.02562 * 21 20 19 26 26 C 1.37759 * 120.29889 * 359.95388 * 25 21 20 27 27 C 1.39262 * 119.66976 * 0.04528 * 26 25 21 28 28 H 0.97002 * 119.99803 * 0.02562 * 1 2 3 29 29 H 1.09004 * 109.47103 * 59.99691 * 9 7 2 30 30 H 1.08992 * 109.47396 * 299.99843 * 9 7 2 31 31 H 1.09004 * 109.46976 * 60.00275 * 10 9 7 32 32 H 1.09004 * 109.47878 * 300.00144 * 10 9 7 33 33 H 1.09004 * 109.46930 * 60.00393 * 11 10 9 34 34 H 1.09000 * 109.47312 * 300.00337 * 11 10 9 35 35 H 1.08004 * 125.11679 * 359.97438 * 16 15 13 36 36 H 1.08008 * 120.03361 * 0.02562 * 20 19 17 37 37 H 1.08001 * 119.84610 * 179.97438 * 25 21 20 38 38 H 1.08000 * 120.16637 * 180.02562 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0045 -1.1942 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4801 -4.9871 0.0012 12 8 2.4237 -6.0908 0.0018 13 6 1.9082 -7.3368 0.0019 14 8 0.7028 -7.4961 0.0010 15 6 2.8021 -8.5006 0.0030 16 6 4.1667 -8.4828 -0.0019 17 7 4.6411 -9.7510 0.0050 18 1 5.5812 -9.9900 0.0053 19 6 3.5991 -10.6554 0.0045 20 6 3.5452 -12.0456 0.0050 21 6 2.3256 -12.6863 0.0049 22 7 2.2746 -14.1656 0.0059 23 8 3.3079 -14.8105 0.0065 24 8 1.1995 -14.7379 0.0053 25 6 1.1445 -11.9581 0.0037 26 6 1.1772 -10.5809 0.0036 27 6 2.4032 -9.9204 0.0038 28 1 -0.4850 0.8401 -0.0004 29 1 0.6246 -2.5571 -0.8897 30 1 0.6240 -2.5568 0.8902 31 1 2.8718 -3.6044 0.8906 32 1 2.8719 -3.6045 -0.8894 33 1 0.8532 -5.0451 -0.8887 34 1 0.8537 -5.0446 0.8914 35 1 4.7764 -7.5913 -0.0078 36 1 4.4587 -12.6220 0.0063 37 1 0.1954 -12.4733 0.0032 38 1 0.2566 -10.0162 0.0031 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000792595310.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:46:30 Heat of formation + Delta-G solvation = -43.966877 kcal Electronic energy + Delta-G solvation = -24412.781998 eV Core-core repulsion = 20416.863631 eV Total energy + Delta-G solvation = -3995.918367 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.109 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.64724 -42.05560 -39.91269 -37.84819 -36.86128 -36.43035 -34.04788 -33.03895 -31.79305 -30.80382 -30.42810 -27.28452 -26.43465 -24.37521 -23.83689 -22.83879 -22.36275 -20.53021 -20.19613 -19.59733 -19.12112 -18.18735 -17.82939 -17.33368 -16.89170 -16.44795 -16.39861 -15.70206 -15.37743 -15.32763 -14.65292 -14.53032 -14.47149 -14.00495 -13.21936 -12.83075 -12.73319 -12.25715 -12.20972 -12.19524 -11.92205 -11.85451 -11.50646 -11.43645 -11.00460 -10.76759 -10.70659 -10.66203 -10.51146 -10.44772 -9.78965 -9.57342 -9.36248 -9.23180 -8.70344 -8.43209 -6.08044 -4.11476 -0.58053 0.30126 0.96026 1.00026 1.28372 2.15252 2.69696 2.75382 3.11513 3.28264 3.33256 3.35108 3.80241 3.96533 4.10179 4.23283 4.34172 4.39397 4.52017 4.71963 5.00525 5.09442 5.26520 5.27822 5.46110 5.51638 5.55560 5.66880 5.74445 5.90286 5.95403 6.14011 6.41061 6.46582 6.50413 6.76193 6.90972 7.33219 7.54602 7.65587 7.85853 7.89884 8.30382 8.94458 9.52883 11.03261 Molecular weight = 318.11amu Principal moments of inertia in cm(-1) A = 0.042973 B = 0.001885 C = 0.001809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 651.408509 B =14850.112492 C =15475.771380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.896 3.104 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.523 4.523 8 H 0.057 0.943 9 C 0.024 3.976 10 C -0.108 4.108 11 C 0.071 3.929 12 O -0.357 6.357 13 C 0.533 3.467 14 O -0.511 6.511 15 C -0.219 4.219 16 C 0.169 3.831 17 N -0.569 5.569 18 H 0.430 0.570 19 C 0.078 3.922 20 C -0.046 4.046 21 C -0.030 4.030 22 N 0.033 4.967 23 O -0.168 6.168 24 O -0.155 6.155 25 C -0.084 4.084 26 C -0.058 4.058 27 C -0.016 4.016 28 H 0.262 0.738 29 H 0.020 0.980 30 H 0.020 0.980 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.203 0.797 36 H 0.155 0.845 37 H 0.157 0.843 38 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.115 -24.290 -0.005 26.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.145 4.145 3 Si 0.723 3.277 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.562 4.562 8 H 0.075 0.925 9 C -0.013 4.013 10 C -0.146 4.146 11 C -0.002 4.002 12 O -0.274 6.274 13 C 0.378 3.622 14 O -0.400 6.400 15 C -0.227 4.227 16 C 0.034 3.966 17 N -0.171 5.171 18 H 0.269 0.731 19 C -0.027 4.027 20 C -0.068 4.068 21 C -0.114 4.114 22 N 0.552 4.448 23 O -0.382 6.382 24 O -0.372 6.372 25 C -0.104 4.104 26 C -0.077 4.077 27 C -0.021 4.021 28 H 0.072 0.928 29 H 0.038 0.962 30 H 0.038 0.962 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.220 0.780 36 H 0.173 0.827 37 H 0.175 0.825 38 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 9.749 -23.508 -0.001 25.449 hybrid contribution 0.775 0.536 -0.003 0.943 sum 10.524 -22.972 -0.004 25.268 Atomic orbital electron populations 1.69952 1.06079 1.26928 1.50275 1.25034 0.94892 0.99374 0.95171 0.86602 0.79532 0.82901 0.78628 1.20204 1.21240 1.20198 1.21119 0.93042 0.90680 1.51320 0.92506 1.19049 0.93845 0.90691 0.97751 1.21772 0.99973 0.90965 1.01901 1.23537 0.91136 0.83135 1.02379 1.86526 1.42525 1.14675 1.83703 1.19736 0.86432 0.82838 0.73217 1.90847 1.15811 1.86887 1.46491 1.19210 0.92006 0.90218 1.21307 1.22672 0.94453 0.87440 0.91994 1.41613 1.08829 1.04555 1.62068 0.73076 1.17648 0.87743 0.90121 1.07220 1.19609 0.97750 0.91011 0.98404 1.20541 0.95995 0.79218 1.15621 1.43510 1.00457 1.03435 0.97401 1.94532 1.23739 1.66120 1.53827 1.94554 1.17714 1.71753 1.53216 1.20816 0.97369 0.93648 0.98583 1.20712 0.97987 0.92160 0.96831 1.19039 0.92671 0.91408 0.99005 0.92790 0.96199 0.96186 0.92151 0.92144 0.91340 0.91346 0.77989 0.82741 0.82518 0.82288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.26 13.29 55.43 0.74 -25.52 16 2 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 3 Si 0.90 21.04 29.54 -169.99 -5.02 16.02 16 4 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 5 H -0.29 -6.70 7.11 56.52 0.40 -6.29 16 6 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 7 C -0.52 -14.29 9.11 -34.44 -0.31 -14.60 16 8 H 0.06 1.49 7.74 -52.48 -0.41 1.08 16 9 C 0.02 0.59 4.97 -27.89 -0.14 0.45 16 10 C -0.11 -2.10 5.53 -26.73 -0.15 -2.24 16 11 C 0.07 1.21 5.48 37.16 0.20 1.41 16 12 O -0.36 -5.25 10.05 -40.88 -0.41 -5.67 16 13 C 0.53 7.47 7.93 34.17 0.27 7.74 16 14 O -0.51 -8.53 15.95 -19.34 -0.31 -8.84 16 15 C -0.22 -2.25 6.27 -103.34 -0.65 -2.90 16 16 C 0.17 1.03 11.62 -16.61 -0.19 0.84 16 17 N -0.57 -2.51 5.98 -10.48 -0.06 -2.58 16 18 H 0.43 0.29 8.96 -40.82 -0.37 -0.08 16 19 C 0.08 0.57 7.25 -83.97 -0.61 -0.04 16 20 C -0.05 -0.34 9.57 -39.43 -0.38 -0.71 16 21 C -0.03 -0.27 6.85 -79.93 -0.55 -0.82 16 22 N 0.03 0.36 4.45 33.97 0.15 0.52 16 23 O -0.17 -1.92 18.41 -29.46 -0.54 -2.46 16 24 O -0.16 -1.84 18.42 -29.46 -0.54 -2.39 16 25 C -0.08 -0.72 9.53 -39.57 -0.38 -1.10 16 26 C -0.06 -0.55 9.85 -39.38 -0.39 -0.93 16 27 C -0.02 -0.16 6.27 -104.95 -0.66 -0.82 16 28 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 29 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 32 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 33 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 34 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 35 H 0.20 0.65 8.06 -52.48 -0.42 0.23 16 36 H 0.15 0.80 7.58 -52.48 -0.40 0.40 16 37 H 0.16 1.14 7.59 -52.49 -0.40 0.74 16 38 H 0.16 1.53 7.45 -52.49 -0.39 1.14 16 LS Contribution 347.65 15.07 5.24 5.24 Total: -1.00 -33.70 347.65 -8.83 -42.53 By element: Atomic # 1 Polarization: -0.57 SS G_CDS: -4.05 Total: -4.62 kcal Atomic # 6 Polarization: -8.22 SS G_CDS: -4.02 Total: -12.24 kcal Atomic # 7 Polarization: -28.41 SS G_CDS: 0.83 Total: -27.58 kcal Atomic # 8 Polarization: -17.55 SS G_CDS: -1.80 Total: -19.35 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -33.70 -8.83 -42.53 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000792595310.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.436 kcal (2) G-P(sol) polarization free energy of solvation -33.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds