Wall clock time and date at job start Tue Mar 31 2020 12:46:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86790 * 120.00291 * 2 1 4 4 H 1.48503 * 109.47092 * 239.99848 * 3 2 1 5 5 H 1.48506 * 109.47148 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47706 * 119.99874 * 3 2 1 7 7 C 1.37884 * 119.99565 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99832 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00204 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.46857 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.46965 * 179.97438 * 10 9 7 12 12 O 1.45206 * 109.47129 * 180.02562 * 11 10 9 13 13 C 1.34841 * 116.99711 * 180.02562 * 12 11 10 14 14 O 1.21593 * 120.00202 * 0.02562 * 13 12 11 15 15 C 1.46742 * 119.99685 * 180.02562 * 13 12 11 16 16 C 1.36470 * 126.78111 * 359.68502 * 15 13 12 17 17 N 1.35400 * 109.76215 * 179.82869 * 16 15 13 18 18 H 0.97003 * 124.77666 * 180.14177 * 17 16 15 19 19 C 1.37977 * 110.44965 * 0.45270 * 17 16 15 20 20 C 1.39121 * 133.17892 * 179.72754 * 19 17 16 21 21 C 1.37765 * 119.93329 * 179.97438 * 20 19 17 22 22 N 1.48021 * 119.68823 * 180.02562 * 21 20 19 23 23 O 1.21800 * 119.99686 * 359.97438 * 22 21 20 24 24 O 1.21796 * 120.00117 * 180.02562 * 22 21 20 25 25 C 1.38756 * 120.62895 * 0.02562 * 21 20 19 26 26 C 1.37759 * 120.29889 * 359.95388 * 25 21 20 27 27 C 1.39262 * 119.66976 * 0.04528 * 26 25 21 28 28 H 0.97002 * 119.99803 * 0.02562 * 1 2 3 29 29 H 1.09004 * 109.47103 * 59.99691 * 9 7 2 30 30 H 1.08992 * 109.47396 * 299.99843 * 9 7 2 31 31 H 1.09004 * 109.46976 * 60.00275 * 10 9 7 32 32 H 1.09004 * 109.47878 * 300.00144 * 10 9 7 33 33 H 1.09004 * 109.46930 * 60.00393 * 11 10 9 34 34 H 1.09000 * 109.47312 * 300.00337 * 11 10 9 35 35 H 1.08004 * 125.11679 * 359.97438 * 16 15 13 36 36 H 1.08008 * 120.03361 * 0.02562 * 20 19 17 37 37 H 1.08001 * 119.84610 * 179.97438 * 25 21 20 38 38 H 1.08000 * 120.16637 * 180.02562 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0045 -1.1942 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4801 -4.9871 0.0012 12 8 2.4237 -6.0908 0.0018 13 6 1.9082 -7.3368 0.0019 14 8 0.7028 -7.4961 0.0010 15 6 2.8021 -8.5006 0.0030 16 6 4.1667 -8.4828 -0.0019 17 7 4.6411 -9.7510 0.0050 18 1 5.5812 -9.9900 0.0053 19 6 3.5991 -10.6554 0.0045 20 6 3.5452 -12.0456 0.0050 21 6 2.3256 -12.6863 0.0049 22 7 2.2746 -14.1656 0.0059 23 8 3.3079 -14.8105 0.0065 24 8 1.1995 -14.7379 0.0053 25 6 1.1445 -11.9581 0.0037 26 6 1.1772 -10.5809 0.0036 27 6 2.4032 -9.9204 0.0038 28 1 -0.4850 0.8401 -0.0004 29 1 0.6246 -2.5571 -0.8897 30 1 0.6240 -2.5568 0.8902 31 1 2.8718 -3.6044 0.8906 32 1 2.8719 -3.6045 -0.8894 33 1 0.8532 -5.0451 -0.8887 34 1 0.8537 -5.0446 0.8914 35 1 4.7764 -7.5913 -0.0078 36 1 4.4587 -12.6220 0.0063 37 1 0.1954 -12.4733 0.0032 38 1 0.2566 -10.0162 0.0031 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000792595310.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:46:30 Heat of formation + Delta-G solvation = -62.839997 kcal Electronic energy + Delta-G solvation = -24413.600398 eV Core-core repulsion = 20416.863631 eV Total energy + Delta-G solvation = -3996.736767 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.109 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.39049 -42.75280 -41.04582 -38.49567 -37.70402 -37.67479 -35.88952 -33.83483 -33.53286 -31.52016 -31.13849 -28.98423 -27.27826 -25.69107 -24.47650 -24.24716 -23.07610 -22.12424 -21.17986 -20.40213 -19.91269 -18.84732 -18.63662 -18.63102 -18.14019 -17.60923 -17.60683 -16.77934 -16.47530 -16.10553 -15.97483 -15.40113 -15.27402 -15.13607 -14.62097 -14.03637 -13.79965 -13.77592 -13.42234 -13.34599 -12.89051 -12.78225 -12.69292 -12.52118 -12.36585 -12.33693 -12.31594 -12.02933 -11.81894 -11.42501 -11.38629 -11.32962 -11.22645 -10.54895 -9.98101 -9.36156 -8.19931 -6.31343 -1.32154 -0.39713 0.23079 0.25692 0.53837 1.42705 1.45902 1.50799 1.54392 1.79419 1.87950 2.32200 2.42820 3.14121 3.19411 3.36366 3.46366 3.52847 3.75061 3.86047 4.05486 4.11709 4.16616 4.22139 4.42660 4.46602 4.60935 4.79490 4.84630 4.89345 5.00045 5.09076 5.12340 5.16906 5.43128 5.46111 5.55231 5.67300 5.82687 6.18300 6.20928 6.46574 6.75886 6.85404 7.38168 8.91964 Molecular weight = 318.11amu Principal moments of inertia in cm(-1) A = 0.042973 B = 0.001885 C = 0.001809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 651.408509 B =14850.112492 C =15475.771380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.003 4.003 3 Si 0.968 3.032 4 H -0.265 1.265 5 H -0.287 1.287 6 H -0.265 1.265 7 C -0.541 4.541 8 H 0.068 0.932 9 C 0.023 3.977 10 C -0.091 4.091 11 C 0.081 3.919 12 O -0.349 6.349 13 C 0.532 3.468 14 O -0.551 6.551 15 C -0.268 4.268 16 C 0.217 3.783 17 N -0.541 5.541 18 H 0.454 0.546 19 C 0.081 3.919 20 C -0.024 4.024 21 C -0.048 4.048 22 N 0.036 4.964 23 O -0.166 6.166 24 O -0.189 6.189 25 C -0.078 4.078 26 C -0.077 4.077 27 C -0.030 4.030 28 H 0.263 0.737 29 H -0.005 1.005 30 H -0.005 1.005 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.060 0.940 34 H 0.060 0.940 35 H 0.241 0.759 36 H 0.183 0.817 37 H 0.162 0.838 38 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.058 -24.398 -0.007 28.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.201 4.201 3 Si 0.793 3.207 4 H -0.190 1.190 5 H -0.213 1.213 6 H -0.190 1.190 7 C -0.579 4.579 8 H 0.086 0.914 9 C -0.014 4.014 10 C -0.129 4.129 11 C 0.008 3.992 12 O -0.265 6.265 13 C 0.379 3.621 14 O -0.443 6.443 15 C -0.276 4.276 16 C 0.080 3.920 17 N -0.143 5.143 18 H 0.298 0.702 19 C -0.025 4.025 20 C -0.045 4.045 21 C -0.132 4.132 22 N 0.551 4.449 23 O -0.382 6.382 24 O -0.399 6.399 25 C -0.098 4.098 26 C -0.096 4.096 27 C -0.035 4.035 28 H 0.072 0.928 29 H 0.013 0.987 30 H 0.013 0.987 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.257 0.743 36 H 0.200 0.800 37 H 0.180 0.820 38 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 13.696 -23.687 -0.003 27.362 hybrid contribution -0.352 0.529 -0.002 0.635 sum 13.344 -23.159 -0.005 26.728 Atomic orbital electron populations 1.70101 1.07922 1.27915 1.51510 1.26027 0.95772 1.03574 0.94735 0.85448 0.78166 0.77810 0.79305 1.18989 1.21251 1.18980 1.21613 0.93835 0.91771 1.50709 0.91369 1.18950 0.94399 0.92675 0.95362 1.21442 0.98629 0.89967 1.02857 1.23110 0.90965 0.83462 1.01693 1.86487 1.41330 1.14643 1.84069 1.20351 0.86677 0.83041 0.71996 1.90830 1.17665 1.87107 1.48692 1.19009 0.93401 0.88818 1.26329 1.23151 0.93009 0.88809 0.87074 1.41618 1.09554 1.03427 1.59741 0.70200 1.17536 0.87654 0.90125 1.07216 1.19840 0.97941 0.91049 0.95655 1.20614 0.96959 0.78038 1.17619 1.43711 1.00143 1.04131 0.96884 1.94502 1.23655 1.66751 1.53332 1.94558 1.17974 1.72410 1.54972 1.20842 0.97852 0.93337 0.97754 1.20617 0.97995 0.92384 0.98635 1.19258 0.93639 0.91758 0.98801 0.92781 0.98664 0.98653 0.91083 0.91070 0.92162 0.92172 0.74272 0.79984 0.82050 0.83627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.03 13.29 21.45 0.28 -55.75 16 2 C 0.00 -0.18 5.46 84.66 0.46 0.28 16 3 Si 0.97 42.80 29.54 68.60 2.03 44.83 16 4 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 5 H -0.29 -12.57 7.11 99.48 0.71 -11.87 16 6 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 7 C -0.54 -29.54 9.11 25.60 0.23 -29.31 16 8 H 0.07 3.48 7.74 -2.91 -0.02 3.46 16 9 C 0.02 1.18 4.97 29.85 0.15 1.33 16 10 C -0.09 -3.48 5.53 30.59 0.17 -3.31 16 11 C 0.08 2.80 5.48 71.98 0.39 3.19 16 12 O -0.35 -9.87 10.05 -57.53 -0.58 -10.45 16 13 C 0.53 14.80 7.93 70.04 0.56 15.35 16 14 O -0.55 -19.23 15.95 19.53 0.31 -18.92 16 15 C -0.27 -5.03 6.27 -19.03 -0.12 -5.15 16 16 C 0.22 1.71 11.62 83.73 0.97 2.68 16 17 N -0.54 -2.17 5.98 -187.06 -1.12 -3.29 16 18 H 0.45 -2.08 8.96 -92.71 -0.83 -2.91 16 19 C 0.08 0.92 7.25 38.91 0.28 1.20 16 20 C -0.02 -0.28 9.57 22.37 0.21 -0.06 16 21 C -0.05 -0.82 6.85 36.39 0.25 -0.57 16 22 N 0.04 0.77 4.45 -46.43 -0.21 0.56 16 23 O -0.17 -3.53 18.41 18.89 0.35 -3.18 16 24 O -0.19 -4.57 18.42 18.89 0.35 -4.22 16 25 C -0.08 -1.36 9.53 22.28 0.21 -1.15 16 26 C -0.08 -1.51 9.85 22.40 0.22 -1.28 16 27 C -0.03 -0.54 6.27 -20.08 -0.13 -0.67 16 28 H 0.26 14.91 8.31 -92.71 -0.77 14.14 16 29 H -0.01 -0.28 8.14 -2.38 -0.02 -0.30 16 30 H 0.00 -0.27 8.14 -2.39 -0.02 -0.29 16 31 H 0.07 2.55 8.14 -2.38 -0.02 2.53 16 32 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 33 H 0.06 2.16 8.14 -2.38 -0.02 2.14 16 34 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 35 H 0.24 0.12 8.06 -2.91 -0.02 0.09 16 36 H 0.18 1.08 7.58 -2.91 -0.02 1.06 16 37 H 0.16 2.52 7.59 -2.91 -0.02 2.49 16 38 H 0.15 3.15 7.45 -2.91 -0.02 3.13 16 Total: -1.00 -76.01 347.65 5.57 -70.43 By element: Atomic # 1 Polarization: -2.82 SS G_CDS: 0.29 Total: -2.53 kcal Atomic # 6 Polarization: -21.35 SS G_CDS: 3.87 Total: -17.48 kcal Atomic # 7 Polarization: -57.43 SS G_CDS: -1.04 Total: -58.47 kcal Atomic # 8 Polarization: -37.21 SS G_CDS: 0.43 Total: -36.78 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 2.03 Total: 44.83 kcal Total: -76.01 5.57 -70.43 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000792595310.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.595 kcal (2) G-P(sol) polarization free energy of solvation -76.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds