Wall clock time and date at job start Tue Mar 31 2020 12:09:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46500 * 109.46605 * 2 1 4 4 C 1.36573 * 127.12175 * 265.04047 * 3 2 1 5 5 N 1.30364 * 107.31596 * 179.97438 * 4 3 2 6 6 N 1.28531 * 110.02521 * 359.72186 * 5 4 3 7 7 C 1.31165 * 109.83872 * 0.45737 * 6 5 4 8 8 N 1.38875 * 126.46840 * 179.82125 * 7 6 5 9 9 C 1.34779 * 120.00012 * 359.68328 * 8 7 6 10 10 O 1.21620 * 119.99990 * 0.02562 * 9 8 7 11 11 C 1.47368 * 119.99871 * 180.02562 * 9 8 7 12 12 C 1.39703 * 120.21935 * 0.02562 * 11 9 8 13 13 C 1.37804 * 119.93386 * 180.02562 * 12 11 9 14 14 C 1.38665 * 120.38782 * 359.97438 * 13 12 11 15 15 C 1.37912 * 120.44252 * 0.02562 * 14 13 12 16 16 C 1.39115 * 120.05055 * 0.02562 * 15 14 13 17 17 S 1.76195 * 120.18685 * 179.97438 * 16 15 14 18 18 C 1.76194 * 100.00358 * 6.70478 * 17 16 15 19 19 H 1.08007 * 120.00133 * 5.63103 * 18 17 16 20 20 C 1.38812 * 120.00546 * 185.63476 * 18 17 16 21 21 N 1.31550 * 119.99408 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 120.00251 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47244 * 89.99792 * 22 20 18 24 24 H 1.48505 * 109.47043 * 209.99396 * 22 20 18 25 25 H 1.48499 * 109.47192 * 329.99532 * 22 20 18 26 26 H 1.09009 * 109.46466 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47430 * 299.99806 * 1 2 3 28 28 H 1.08997 * 109.47162 * 60.00468 * 1 2 3 29 29 H 1.08996 * 109.47430 * 240.00194 * 2 1 3 30 30 H 1.09005 * 109.47123 * 119.99174 * 2 1 3 31 31 H 1.07996 * 126.34316 * 359.97438 * 4 3 2 32 32 H 0.97006 * 120.00343 * 179.69244 * 8 7 6 33 33 H 1.07995 * 120.03585 * 359.97438 * 12 11 9 34 34 H 1.08008 * 119.80380 * 179.97438 * 13 12 11 35 35 H 1.08003 * 119.77543 * 180.02562 * 14 13 12 36 36 H 1.07991 * 119.97152 * 179.74796 * 15 14 13 37 37 H 0.97003 * 119.99918 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.3817 2.1270 -1.0849 5 7 2.7539 3.2963 -0.6449 6 7 2.6449 3.3401 0.6351 7 6 2.2034 2.1894 1.0838 8 7 1.9638 1.8580 2.4110 9 6 2.1933 2.7625 3.3834 10 8 2.6098 3.8691 3.0987 11 6 1.9396 2.4106 4.7918 12 6 1.4616 1.1406 5.1241 13 6 1.2259 0.8180 6.4430 14 6 1.4608 1.7471 7.4452 15 6 1.9326 3.0053 7.1349 16 6 2.1759 3.3509 5.8095 17 16 2.7780 4.9576 5.4090 18 6 3.0669 5.5886 7.0285 19 1 2.9451 4.9462 7.8881 20 6 3.4511 6.9115 7.1998 21 7 3.5999 7.6939 6.1527 22 14 3.7580 7.5802 8.9167 23 1 5.1841 7.3790 9.2787 24 1 3.4395 9.0304 8.9473 25 1 2.8946 6.8631 9.8889 26 1 -0.3632 -1.0278 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5137 -0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 1.8934 -0.5137 0.8901 31 1 2.3640 1.8073 -2.1163 32 1 1.6313 0.9754 2.6382 33 1 1.2763 0.4127 4.3482 34 1 0.8560 -0.1643 6.6975 35 1 1.2731 1.4836 8.4756 36 1 2.1091 3.7244 7.9211 37 1 3.8687 8.6182 6.2723 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000803528180.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:33 Heat of formation + Delta-G solvation = 93.083325 kcal Electronic energy + Delta-G solvation = -23395.237792 eV Core-core repulsion = 19880.307990 eV Total energy + Delta-G solvation = -3514.929802 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.089 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.88490 -39.64304 -37.58331 -36.01098 -34.55577 -32.79184 -31.03192 -30.78826 -30.36976 -29.13902 -25.86880 -24.66902 -24.00725 -22.46839 -22.13544 -21.34658 -19.90129 -18.57726 -17.82894 -17.11794 -16.45308 -16.12288 -15.94238 -15.27546 -15.00287 -14.63674 -14.43756 -14.39441 -13.99582 -13.84383 -13.40097 -13.10206 -12.95983 -12.72969 -12.18706 -11.90466 -11.66403 -11.34824 -11.21153 -11.20715 -10.98099 -10.87574 -10.36959 -10.19374 -10.14592 -9.88524 -9.73854 -9.54816 -8.80099 -8.49119 -8.25906 -8.14340 -6.60858 -6.48657 -4.20858 1.33341 1.89617 1.94107 1.99591 3.05682 3.08119 3.12178 3.12964 3.19333 3.37224 3.52938 4.03145 4.11793 4.38366 4.45745 4.53122 4.69191 4.89163 4.92477 5.04606 5.09072 5.11017 5.21770 5.34938 5.51616 5.58124 5.58636 5.80172 5.86318 6.02001 6.28172 6.39559 6.49702 6.72136 6.89421 7.00576 7.05118 7.37591 7.44249 7.52010 8.12545 8.51917 8.96621 9.00807 10.54291 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.017208 B = 0.003855 C = 0.003187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1626.793077 B = 7261.290632 C = 8782.218852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.103 3.897 3 N -0.501 5.501 4 C 0.137 3.863 5 N -0.282 5.282 6 N -0.272 5.272 7 C 0.416 3.584 8 N -0.640 5.640 9 C 0.548 3.452 10 O -0.439 6.439 11 C -0.177 4.177 12 C -0.061 4.061 13 C -0.186 4.186 14 C -0.074 4.074 15 C -0.149 4.149 16 C -0.059 4.059 17 S 0.203 5.797 18 C -0.600 4.600 19 H 0.093 0.907 20 C 0.084 3.916 21 N -0.852 5.852 22 Si 0.921 3.079 23 H -0.272 1.272 24 H -0.279 1.279 25 H -0.267 1.267 26 H 0.080 0.920 27 H 0.064 0.936 28 H 0.067 0.933 29 H 0.102 0.898 30 H 0.090 0.910 31 H 0.219 0.781 32 H 0.408 0.592 33 H 0.107 0.893 34 H 0.112 0.888 35 H 0.113 0.887 36 H 0.141 0.859 37 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.676 -19.710 -8.484 22.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.020 4.020 3 N -0.202 5.202 4 C -0.150 4.150 5 N -0.120 5.120 6 N -0.117 5.117 7 C 0.061 3.939 8 N -0.296 5.296 9 C 0.336 3.664 10 O -0.307 6.307 11 C -0.193 4.193 12 C -0.081 4.081 13 C -0.211 4.211 14 C -0.097 4.097 15 C -0.174 4.174 16 C -0.179 4.179 17 S 0.469 5.531 18 C -0.746 4.746 19 H 0.110 0.890 20 C -0.128 4.128 21 N -0.484 5.484 22 Si 0.746 3.254 23 H -0.198 1.198 24 H -0.204 1.204 25 H -0.192 1.192 26 H 0.099 0.901 27 H 0.083 0.917 28 H 0.086 0.914 29 H 0.120 0.880 30 H 0.108 0.892 31 H 0.235 0.765 32 H 0.246 0.754 33 H 0.125 0.875 34 H 0.131 0.869 35 H 0.131 0.869 36 H 0.158 0.842 37 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -5.466 -16.218 -9.769 19.706 hybrid contribution -0.795 -2.348 2.281 3.369 sum -6.261 -18.567 -7.487 20.976 Atomic orbital electron populations 1.22214 0.93770 1.03464 1.03724 1.21856 0.95852 0.79288 1.05034 1.46574 1.53442 1.13859 1.06359 1.26244 1.04898 0.90000 0.93858 1.74217 1.17267 1.17002 1.03533 1.75158 1.20216 1.14481 1.01890 1.21416 1.00910 0.88567 0.82991 1.42702 1.68103 1.18469 1.00320 1.18476 0.79066 0.84231 0.84594 1.90953 1.39408 1.19314 1.81064 1.18747 1.14674 0.95840 0.90034 1.20823 0.97023 0.93989 0.96276 1.20605 1.08109 0.99695 0.92657 1.21105 0.96652 0.93389 0.98527 1.21445 1.02532 0.97384 0.95999 1.23095 0.97638 1.02286 0.94913 1.84892 1.62863 0.97865 1.07477 1.24072 1.54286 1.00012 0.96226 0.88964 1.25130 0.93359 0.95567 0.98713 1.69978 1.41070 1.07425 1.29935 0.86120 0.79105 0.78242 0.81929 1.19797 1.20405 1.19189 0.90111 0.91693 0.91414 0.88010 0.89205 0.76499 0.75415 0.87535 0.86946 0.86854 0.84169 0.91311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.85 10.24 37.16 0.38 -0.47 16 2 C 0.10 0.56 6.74 -4.04 -0.03 0.53 16 3 N -0.50 -5.48 2.80 -118.68 -0.33 -5.81 16 4 C 0.14 1.61 12.79 -89.07 -1.14 0.47 16 5 N -0.28 -4.97 12.18 29.87 0.36 -4.61 16 6 N -0.27 -5.56 10.45 30.37 0.32 -5.24 16 7 C 0.42 6.66 8.54 -318.51 -2.72 3.94 16 8 N -0.64 -9.55 5.35 -13.42 -0.07 -9.62 16 9 C 0.55 10.83 7.71 -12.54 -0.10 10.73 16 10 O -0.44 -10.83 12.50 5.26 0.07 -10.77 16 11 C -0.18 -3.37 5.89 -104.76 -0.62 -3.99 16 12 C -0.06 -0.89 9.53 -39.19 -0.37 -1.26 16 13 C -0.19 -2.63 10.02 -39.58 -0.40 -3.03 16 14 C -0.07 -1.19 10.03 -39.54 -0.40 -1.59 16 15 C -0.15 -2.99 9.22 -39.38 -0.36 -3.35 16 16 C -0.06 -1.31 6.15 -38.38 -0.24 -1.54 16 17 S 0.20 5.43 18.56 -107.50 -2.00 3.44 16 18 C -0.60 -16.37 9.00 30.94 0.28 -16.10 16 19 H 0.09 2.36 4.98 -52.48 -0.26 2.10 16 20 C 0.08 2.30 5.49 -17.46 -0.10 2.20 16 21 N -0.85 -24.72 13.22 55.49 0.73 -23.98 16 22 Si 0.92 20.57 29.55 -169.99 -5.02 15.54 16 23 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 24 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 25 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 26 H 0.08 0.22 8.14 -51.92 -0.42 -0.21 16 27 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 29 H 0.10 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.09 0.38 7.85 -51.93 -0.41 -0.03 16 31 H 0.22 1.36 8.06 -52.49 -0.42 0.93 16 32 H 0.41 4.22 6.33 -40.82 -0.26 3.96 16 33 H 0.11 1.07 6.40 -52.49 -0.34 0.73 16 34 H 0.11 1.22 8.06 -52.48 -0.42 0.80 16 35 H 0.11 1.49 8.06 -52.48 -0.42 1.07 16 36 H 0.14 2.95 5.03 -52.49 -0.26 2.68 16 37 H 0.28 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 332.92 15.07 5.02 5.02 Total: -1.00 -36.87 332.92 -10.35 -47.22 By element: Atomic # 1 Polarization: 5.87 SS G_CDS: -3.62 Total: 2.25 kcal Atomic # 6 Polarization: -7.64 SS G_CDS: -5.80 Total: -13.44 kcal Atomic # 7 Polarization: -50.27 SS G_CDS: 1.01 Total: -49.26 kcal Atomic # 8 Polarization: -10.83 SS G_CDS: 0.07 Total: -10.77 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.54 kcal Atomic # 16 Polarization: 5.43 SS G_CDS: -2.00 Total: 3.44 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -36.87 -10.35 -47.22 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000803528180.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.307 kcal (2) G-P(sol) polarization free energy of solvation -36.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.223 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds