Wall clock time and date at job start Tue Mar 31 2020 12:09:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46500 * 109.46605 * 2 1 4 4 C 1.36573 * 127.12175 * 265.04047 * 3 2 1 5 5 N 1.30364 * 107.31596 * 179.97438 * 4 3 2 6 6 N 1.28531 * 110.02521 * 359.72186 * 5 4 3 7 7 C 1.31165 * 109.83872 * 0.45737 * 6 5 4 8 8 N 1.38875 * 126.46840 * 179.82125 * 7 6 5 9 9 C 1.34779 * 120.00012 * 359.68328 * 8 7 6 10 10 O 1.21620 * 119.99990 * 0.02562 * 9 8 7 11 11 C 1.47368 * 119.99871 * 180.02562 * 9 8 7 12 12 C 1.39703 * 120.21935 * 0.02562 * 11 9 8 13 13 C 1.37804 * 119.93386 * 180.02562 * 12 11 9 14 14 C 1.38665 * 120.38782 * 359.97438 * 13 12 11 15 15 C 1.37912 * 120.44252 * 0.02562 * 14 13 12 16 16 C 1.39115 * 120.05055 * 0.02562 * 15 14 13 17 17 S 1.76195 * 120.18685 * 179.97438 * 16 15 14 18 18 C 1.76194 * 100.00358 * 6.70478 * 17 16 15 19 19 H 1.08007 * 120.00133 * 5.63103 * 18 17 16 20 20 C 1.38812 * 120.00546 * 185.63476 * 18 17 16 21 21 N 1.31550 * 119.99408 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 120.00251 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47244 * 89.99792 * 22 20 18 24 24 H 1.48505 * 109.47043 * 209.99396 * 22 20 18 25 25 H 1.48499 * 109.47192 * 329.99532 * 22 20 18 26 26 H 1.09009 * 109.46466 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47430 * 299.99806 * 1 2 3 28 28 H 1.08997 * 109.47162 * 60.00468 * 1 2 3 29 29 H 1.08996 * 109.47430 * 240.00194 * 2 1 3 30 30 H 1.09005 * 109.47123 * 119.99174 * 2 1 3 31 31 H 1.07996 * 126.34316 * 359.97438 * 4 3 2 32 32 H 0.97006 * 120.00343 * 179.69244 * 8 7 6 33 33 H 1.07995 * 120.03585 * 359.97438 * 12 11 9 34 34 H 1.08008 * 119.80380 * 179.97438 * 13 12 11 35 35 H 1.08003 * 119.77543 * 180.02562 * 14 13 12 36 36 H 1.07991 * 119.97152 * 179.74796 * 15 14 13 37 37 H 0.97003 * 119.99918 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.3817 2.1270 -1.0849 5 7 2.7539 3.2963 -0.6449 6 7 2.6449 3.3401 0.6351 7 6 2.2034 2.1894 1.0838 8 7 1.9638 1.8580 2.4110 9 6 2.1933 2.7625 3.3834 10 8 2.6098 3.8691 3.0987 11 6 1.9396 2.4106 4.7918 12 6 1.4616 1.1406 5.1241 13 6 1.2259 0.8180 6.4430 14 6 1.4608 1.7471 7.4452 15 6 1.9326 3.0053 7.1349 16 6 2.1759 3.3509 5.8095 17 16 2.7780 4.9576 5.4090 18 6 3.0669 5.5886 7.0285 19 1 2.9451 4.9462 7.8881 20 6 3.4511 6.9115 7.1998 21 7 3.5999 7.6939 6.1527 22 14 3.7580 7.5802 8.9167 23 1 5.1841 7.3790 9.2787 24 1 3.4395 9.0304 8.9473 25 1 2.8946 6.8631 9.8889 26 1 -0.3632 -1.0278 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5137 -0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 1.8934 -0.5137 0.8901 31 1 2.3640 1.8073 -2.1163 32 1 1.6313 0.9754 2.6382 33 1 1.2763 0.4127 4.3482 34 1 0.8560 -0.1643 6.6975 35 1 1.2731 1.4836 8.4756 36 1 2.1091 3.7244 7.9211 37 1 3.8687 8.6182 6.2723 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000803528180.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:32 Heat of formation + Delta-G solvation = 69.631255 kcal Electronic energy + Delta-G solvation = -23396.254750 eV Core-core repulsion = 19880.307990 eV Total energy + Delta-G solvation = -3515.946760 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.089 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.98219 -41.13022 -39.04157 -36.92838 -35.85249 -34.78062 -32.43244 -31.81939 -31.47259 -30.37190 -27.86081 -25.76111 -24.98003 -23.65601 -23.45592 -22.47288 -21.28522 -20.06562 -19.23276 -18.47404 -17.55735 -17.40100 -17.12682 -17.06989 -16.21815 -15.91516 -15.79260 -15.54260 -15.36224 -14.96714 -14.72562 -14.51000 -14.03131 -13.64473 -13.34287 -13.19465 -12.99130 -12.90899 -12.57881 -12.38736 -12.28961 -12.18469 -12.05757 -11.57633 -11.45165 -11.36863 -11.13371 -11.08880 -10.43155 -9.97996 -9.90611 -9.52359 -8.51098 -8.45870 -6.27018 -0.09024 0.52624 0.84405 0.94518 1.25918 1.36917 1.45679 1.62145 1.80996 2.11941 2.17566 2.22941 2.86760 3.01057 3.21961 3.47842 3.69982 3.86917 3.96061 4.06888 4.25741 4.26583 4.35144 4.42881 4.52673 4.60646 4.66135 4.80146 4.87191 5.01447 5.07947 5.25048 5.30375 5.35082 5.43334 5.54739 5.66872 6.04171 6.07804 6.14000 6.22328 6.94696 7.09496 7.88175 8.59885 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.017208 B = 0.003855 C = 0.003187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1626.793077 B = 7261.290632 C = 8782.218852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.091 3.909 3 N -0.484 5.484 4 C 0.173 3.827 5 N -0.347 5.347 6 N -0.346 5.346 7 C 0.400 3.600 8 N -0.615 5.615 9 C 0.545 3.455 10 O -0.495 6.495 11 C -0.177 4.177 12 C -0.050 4.050 13 C -0.152 4.152 14 C -0.064 4.064 15 C -0.172 4.172 16 C -0.070 4.070 17 S 0.061 5.939 18 C -0.601 4.601 19 H 0.099 0.901 20 C 0.022 3.978 21 N -0.906 5.906 22 Si 0.997 3.003 23 H -0.266 1.266 24 H -0.275 1.275 25 H -0.253 1.253 26 H 0.111 0.889 27 H 0.045 0.955 28 H 0.060 0.940 29 H 0.140 0.860 30 H 0.109 0.891 31 H 0.275 0.725 32 H 0.432 0.568 33 H 0.166 0.834 34 H 0.172 0.828 35 H 0.153 0.847 36 H 0.120 0.880 37 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.693 -26.249 -8.166 28.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.029 4.029 3 N -0.184 5.184 4 C -0.115 4.115 5 N -0.184 5.184 6 N -0.191 5.191 7 C 0.042 3.958 8 N -0.273 5.273 9 C 0.334 3.666 10 O -0.367 6.367 11 C -0.191 4.191 12 C -0.069 4.069 13 C -0.175 4.175 14 C -0.085 4.085 15 C -0.197 4.197 16 C -0.189 4.189 17 S 0.321 5.679 18 C -0.747 4.747 19 H 0.117 0.883 20 C -0.184 4.184 21 N -0.541 5.541 22 Si 0.817 3.183 23 H -0.191 1.191 24 H -0.199 1.199 25 H -0.177 1.177 26 H 0.129 0.871 27 H 0.064 0.936 28 H 0.079 0.921 29 H 0.158 0.842 30 H 0.127 0.873 31 H 0.290 0.710 32 H 0.274 0.726 33 H 0.183 0.817 34 H 0.190 0.810 35 H 0.170 0.830 36 H 0.138 0.862 37 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -7.549 -22.945 -9.461 25.942 hybrid contribution -0.378 -0.918 1.978 2.213 sum -7.928 -23.863 -7.483 26.235 Atomic orbital electron populations 1.22219 0.93160 1.05004 1.02471 1.22458 0.96279 0.76173 1.07954 1.46858 1.52021 1.15279 1.04205 1.27339 1.00252 0.88156 0.95788 1.74086 1.20911 1.20589 1.02852 1.74981 1.22494 1.17934 1.03695 1.21293 1.01518 0.88972 0.83993 1.42147 1.67091 1.18532 0.99489 1.18760 0.78102 0.84035 0.85753 1.90964 1.41714 1.22008 1.81975 1.19085 1.13841 0.97157 0.89063 1.21445 0.94430 0.92447 0.98627 1.21358 1.03612 1.01160 0.91394 1.21604 0.94035 0.91437 1.01416 1.21447 1.04411 0.99335 0.94514 1.22970 0.99146 0.99818 0.96917 1.85187 1.69574 1.03719 1.09464 1.24247 1.54225 1.00401 0.95874 0.88332 1.26224 0.93205 0.95824 1.03103 1.70159 1.43773 1.07643 1.32499 0.84990 0.79225 0.77533 0.76530 1.19127 1.19950 1.17698 0.87071 0.93603 0.92109 0.84240 0.87272 0.70966 0.72616 0.81696 0.81014 0.82974 0.86248 0.91515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.89 10.24 71.98 0.74 -0.15 16 2 C 0.09 0.52 6.74 86.38 0.58 1.10 16 3 N -0.48 -9.24 2.80 -529.38 -1.48 -10.73 16 4 C 0.17 3.67 12.79 179.81 2.30 5.97 16 5 N -0.35 -12.58 12.18 -59.40 -0.72 -13.30 16 6 N -0.35 -14.95 10.45 -57.84 -0.60 -15.55 16 7 C 0.40 12.67 8.54 259.98 2.22 14.89 16 8 N -0.62 -17.56 5.35 -314.61 -1.68 -19.25 16 9 C 0.54 22.15 7.71 86.65 0.67 22.82 16 10 O -0.50 -26.65 12.50 -4.09 -0.05 -26.70 16 11 C -0.18 -6.63 5.89 -19.95 -0.12 -6.75 16 12 C -0.05 -1.17 9.53 22.52 0.21 -0.96 16 13 C -0.15 -3.21 10.02 22.27 0.22 -2.98 16 14 C -0.06 -1.76 10.03 22.29 0.22 -1.53 16 15 C -0.17 -6.89 9.22 22.40 0.21 -6.69 16 16 C -0.07 -3.25 6.15 23.05 0.14 -3.11 16 17 S 0.06 3.59 18.56 -56.49 -1.05 2.54 16 18 C -0.60 -35.55 9.00 67.96 0.61 -34.94 16 19 H 0.10 5.41 4.98 -2.91 -0.01 5.40 16 20 C 0.02 1.29 5.49 84.87 0.47 1.76 16 21 N -0.91 -57.38 13.22 21.65 0.29 -57.09 16 22 Si 1.00 44.62 29.55 68.60 2.03 46.65 16 23 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 24 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 25 H -0.25 -10.56 7.11 99.48 0.71 -9.85 16 26 H 0.11 -0.04 8.14 -2.38 -0.02 -0.06 16 27 H 0.04 0.43 8.14 -2.39 -0.02 0.41 16 28 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 29 H 0.14 -0.13 8.14 -2.39 -0.02 -0.15 16 30 H 0.11 0.27 7.85 -2.38 -0.02 0.25 16 31 H 0.27 2.14 8.06 -2.91 -0.02 2.11 16 32 H 0.43 7.17 6.33 -92.70 -0.59 6.58 16 33 H 0.17 1.98 6.40 -2.91 -0.02 1.96 16 34 H 0.17 1.90 8.06 -2.91 -0.02 1.87 16 35 H 0.15 3.08 8.06 -2.91 -0.02 3.06 16 36 H 0.12 5.23 5.03 -2.92 -0.01 5.22 16 37 H 0.28 16.14 8.31 -92.71 -0.77 15.37 16 Total: -1.00 -99.13 332.92 5.74 -93.38 By element: Atomic # 1 Polarization: 10.07 SS G_CDS: 0.55 Total: 10.62 kcal Atomic # 6 Polarization: -19.05 SS G_CDS: 8.48 Total: -10.57 kcal Atomic # 7 Polarization: -111.71 SS G_CDS: -4.21 Total: -115.92 kcal Atomic # 8 Polarization: -26.65 SS G_CDS: -0.05 Total: -26.70 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.65 kcal Atomic # 16 Polarization: 3.59 SS G_CDS: -1.05 Total: 2.54 kcal Total: -99.13 5.74 -93.38 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000803528180.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.014 kcal (2) G-P(sol) polarization free energy of solvation -99.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.382 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds