Wall clock time and date at job start Tue Mar 31 2020 12:55:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86795 * 120.00164 * 2 1 4 4 H 1.48500 * 109.46983 * 269.99539 * 3 2 1 5 5 H 1.48499 * 109.47218 * 29.99608 * 3 2 1 6 6 H 1.48505 * 109.47256 * 149.99614 * 3 2 1 7 7 C 1.37885 * 119.99875 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99708 * 0.02562 * 7 2 1 9 9 C 1.50696 * 119.99883 * 180.02562 * 7 2 1 10 10 C 1.52998 * 109.46969 * 180.02562 * 9 7 2 11 11 C 1.50706 * 109.47348 * 179.97438 * 10 9 7 12 12 O 1.20830 * 119.99594 * 359.97438 * 11 10 9 13 13 O 1.34222 * 120.00024 * 179.72254 * 11 10 9 14 14 C 1.45201 * 116.99867 * 180.02562 * 13 11 10 15 15 C 1.50695 * 109.47187 * 180.02562 * 14 13 11 16 16 N 1.30048 * 126.18000 * 269.68582 * 15 14 13 17 17 O 1.21288 * 110.50283 * 179.80024 * 16 15 14 18 18 C 1.34223 * 109.69356 * 0.46976 * 17 16 15 19 19 C 1.47605 * 126.68568 * 179.69310 * 18 17 16 20 20 C 1.39644 * 120.18233 * 180.02562 * 19 18 17 21 21 C 1.37862 * 119.90592 * 179.97438 * 20 19 18 22 22 C 1.38495 * 120.28398 * 0.02562 * 21 20 19 23 23 C 1.38117 * 120.37710 * 359.97438 * 22 21 20 24 24 C 1.38638 * 120.08497 * 359.73713 * 23 22 21 25 25 O 1.35737 * 120.14458 * 180.25207 * 24 23 22 26 26 N 1.32212 * 106.62827 * 359.71240 * 18 17 16 27 27 H 0.96999 * 119.99804 * 0.02562 * 1 2 3 28 28 H 1.09000 * 109.47664 * 59.99992 * 9 7 2 29 29 H 1.09002 * 109.46824 * 299.99463 * 9 7 2 30 30 H 1.09001 * 109.47671 * 59.99812 * 10 9 7 31 31 H 1.08998 * 109.47454 * 299.99809 * 10 9 7 32 32 H 1.09009 * 109.46864 * 300.00062 * 14 13 11 33 33 H 1.09001 * 109.47271 * 60.00074 * 14 13 11 34 34 H 1.08000 * 120.05046 * 359.97438 * 20 19 18 35 35 H 1.07999 * 119.85399 * 179.97438 * 21 20 19 36 36 H 1.07995 * 119.80870 * 179.97438 * 22 21 20 37 37 H 1.08003 * 119.96246 * 179.97438 * 23 22 21 38 38 H 0.96693 * 114.00052 * 270.28425 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 6 4.0215 -2.6366 0.0010 11 6 5.5285 -2.6367 0.0009 12 8 6.1327 -1.5903 0.0005 13 8 6.1996 -3.7992 0.0065 14 6 7.6496 -3.7232 0.0066 15 6 8.2255 -5.1158 0.0125 16 7 8.5239 -5.8187 1.0652 17 8 8.9650 -6.9013 0.7421 18 6 9.0014 -6.9937 -0.5965 19 6 9.4769 -8.1450 -1.3883 20 6 9.4547 -8.0946 -2.7837 21 6 9.9006 -9.1730 -3.5177 22 6 10.3706 -10.3075 -2.8771 23 6 10.3978 -10.3700 -1.4976 24 6 9.9586 -9.2921 -0.7443 25 8 9.9896 -9.3503 0.6115 26 7 8.5287 -5.8523 -1.0675 27 1 -0.4850 0.8401 -0.0004 28 1 3.8746 -0.6801 0.8911 29 1 3.8751 -0.6806 -0.8889 30 1 3.6585 -3.1504 -0.8892 31 1 3.6578 -3.1507 0.8907 32 1 7.9858 -3.1951 -0.8857 33 1 7.9853 -3.1871 0.8943 34 1 9.0886 -7.2121 -3.2872 35 1 9.8827 -9.1333 -4.5968 36 1 10.7177 -11.1480 -3.4596 37 1 10.7652 -11.2581 -1.0050 38 1 9.1833 -9.7071 1.0083 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812614297.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:55:42 Heat of formation + Delta-G solvation = -32.816725 kcal Electronic energy + Delta-G solvation = -24583.306382 eV Core-core repulsion = 20587.871522 eV Total energy + Delta-G solvation = -3995.434860 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.109 amu Computer time = 1.80 seconds Orbital eigenvalues (eV) -45.87175 -40.34483 -40.22137 -37.33691 -36.84023 -35.87533 -33.83494 -33.65768 -31.50308 -31.09778 -30.30468 -28.79276 -26.30699 -25.11376 -23.74409 -22.85532 -22.11374 -21.49612 -19.93200 -19.07916 -18.46362 -18.14907 -17.59492 -17.08604 -16.72743 -16.36194 -16.12416 -16.03043 -15.75532 -14.89632 -14.42011 -14.22861 -13.97666 -13.76671 -13.24249 -13.06180 -12.93460 -12.73116 -12.54599 -12.51474 -12.22470 -11.99219 -11.50690 -11.48486 -11.15240 -11.05070 -10.95831 -10.72648 -10.38171 -10.20363 -10.00273 -9.75495 -9.47038 -9.28513 -9.14955 -8.57404 -6.08865 -4.09034 -0.09703 0.63306 1.11651 1.78857 2.29806 2.56350 2.81930 3.00616 3.32010 3.33331 3.40377 3.49168 3.52171 3.69016 4.27639 4.31046 4.44713 4.49491 4.66210 4.77950 4.88264 5.02824 5.08736 5.21227 5.25713 5.32544 5.39471 5.51323 5.66278 5.70015 5.81666 5.94381 5.96002 6.08987 6.36251 6.64535 7.01677 7.20056 7.27472 7.67804 7.78586 8.05902 8.44508 8.93217 9.52566 11.03631 Molecular weight = 318.11amu Principal moments of inertia in cm(-1) A = 0.028511 B = 0.002056 C = 0.002015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.843278 B =13618.182828 C =13889.888887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.071 3.929 3 Si 0.878 3.122 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.262 1.262 7 C -0.528 4.528 8 H 0.076 0.924 9 C -0.002 4.002 10 C -0.093 4.093 11 C 0.463 3.537 12 O -0.506 6.506 13 O -0.358 6.358 14 C 0.158 3.842 15 C 0.175 3.825 16 N -0.361 5.361 17 O 0.108 5.892 18 C 0.225 3.775 19 C -0.060 4.060 20 C -0.046 4.046 21 C -0.132 4.132 22 C -0.074 4.074 23 C -0.149 4.149 24 C 0.150 3.850 25 O -0.488 6.488 26 N -0.458 5.458 27 H 0.265 0.735 28 H 0.027 0.973 29 H 0.022 0.978 30 H 0.101 0.899 31 H 0.101 0.899 32 H 0.104 0.896 33 H 0.100 0.900 34 H 0.145 0.855 35 H 0.138 0.862 36 H 0.136 0.864 37 H 0.140 0.860 38 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.665 -24.362 -4.970 34.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.131 4.131 3 Si 0.704 3.296 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.186 1.186 7 C -0.566 4.566 8 H 0.094 0.906 9 C -0.040 4.040 10 C -0.131 4.131 11 C 0.307 3.693 12 O -0.392 6.392 13 O -0.275 6.275 14 C 0.082 3.918 15 C -0.098 4.098 16 N -0.065 5.065 17 O 0.042 5.958 18 C 0.008 3.992 19 C -0.063 4.063 20 C -0.066 4.066 21 C -0.150 4.150 22 C -0.093 4.093 23 C -0.168 4.168 24 C 0.103 3.897 25 O -0.300 6.300 26 N -0.192 5.192 27 H 0.074 0.926 28 H 0.045 0.955 29 H 0.041 0.959 30 H 0.119 0.881 31 H 0.119 0.881 32 H 0.122 0.878 33 H 0.118 0.882 34 H 0.163 0.837 35 H 0.156 0.844 36 H 0.153 0.847 37 H 0.158 0.842 38 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges 23.981 -22.983 -4.487 33.518 hybrid contribution 0.094 0.632 0.087 0.645 sum 24.075 -22.352 -4.400 33.144 Atomic orbital electron populations 1.69901 1.06269 1.27105 1.50500 1.24958 0.94742 0.99220 0.94200 0.86797 0.80573 0.83383 0.78806 1.20126 1.21289 1.18595 1.21011 0.88749 0.94837 1.51969 0.90618 1.19502 0.97004 0.89415 0.98041 1.21592 0.82663 1.03751 1.05081 1.24856 0.92689 0.80448 0.71307 1.90641 1.70438 1.32830 1.45330 1.86595 1.18884 1.37047 1.85000 1.20716 0.79239 0.86519 1.05339 1.25156 1.01410 0.99657 0.83556 1.74676 1.14749 0.93456 1.23588 1.85493 1.58758 1.27595 1.23975 1.26093 0.96639 0.94680 0.81826 1.17681 1.05999 0.90241 0.92345 1.21246 0.95164 0.99410 0.90773 1.21193 0.99926 0.93005 1.00853 1.21344 0.95922 0.98082 0.93967 1.21409 1.02717 0.98405 0.94238 1.18516 0.95905 0.91701 0.83622 1.84794 1.43348 1.86785 1.15030 1.72111 1.16328 1.01896 1.28832 0.92566 0.95501 0.95924 0.88092 0.88105 0.87793 0.88206 0.83705 0.84397 0.84659 0.84197 0.74179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.58 13.96 55.43 0.77 -26.80 16 2 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 3 Si 0.88 22.17 27.47 -169.99 -4.67 17.50 16 4 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 5 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 6 H -0.26 -6.53 6.54 56.52 0.37 -6.17 16 7 C -0.53 -14.89 9.66 -34.44 -0.33 -15.23 16 8 H 0.08 2.23 7.99 -52.49 -0.42 1.81 16 9 C 0.00 -0.05 3.33 -27.89 -0.09 -0.14 16 10 C -0.09 -1.83 5.75 -27.88 -0.16 -1.99 16 11 C 0.46 8.72 7.96 36.01 0.29 9.01 16 12 O -0.51 -10.68 15.73 -18.75 -0.30 -10.97 16 13 O -0.36 -6.02 10.20 -39.24 -0.40 -6.42 16 14 C 0.16 2.27 6.09 36.00 0.22 2.49 16 15 C 0.18 2.50 7.84 -156.56 -1.23 1.27 16 16 N -0.36 -5.11 12.15 31.21 0.38 -4.73 16 17 O 0.11 1.31 10.00 -1.92 -0.02 1.29 16 18 C 0.22 2.56 7.96 -13.90 -0.11 2.45 16 19 C -0.06 -0.51 5.88 -104.85 -0.62 -1.13 16 20 C -0.05 -0.32 9.70 -39.19 -0.38 -0.70 16 21 C -0.13 -0.61 10.03 -39.62 -0.40 -1.01 16 22 C -0.07 -0.29 10.03 -39.53 -0.40 -0.68 16 23 C -0.15 -0.71 9.98 -39.48 -0.39 -1.10 16 24 C 0.15 1.02 6.72 -38.74 -0.26 0.76 16 25 O -0.49 -3.18 11.95 -37.43 -0.45 -3.62 16 26 N -0.46 -6.12 11.26 -10.18 -0.11 -6.23 16 27 H 0.26 7.59 8.31 -40.82 -0.34 7.26 16 28 H 0.03 0.67 7.16 -51.93 -0.37 0.30 16 29 H 0.02 0.56 7.53 -51.93 -0.39 0.17 16 30 H 0.10 1.84 8.14 -51.93 -0.42 1.42 16 31 H 0.10 1.85 8.14 -51.93 -0.42 1.42 16 32 H 0.10 1.38 8.14 -51.92 -0.42 0.96 16 33 H 0.10 1.35 8.13 -51.93 -0.42 0.92 16 34 H 0.15 1.02 7.88 -52.49 -0.41 0.61 16 35 H 0.14 0.34 8.06 -52.49 -0.42 -0.08 16 36 H 0.14 0.18 8.06 -52.49 -0.42 -0.25 16 37 H 0.14 0.40 8.06 -52.48 -0.42 -0.02 16 38 H 0.40 0.97 9.06 45.56 0.41 1.38 16 LS Contribution 344.52 15.07 5.19 5.19 Total: -1.00 -35.40 344.52 -6.87 -42.27 By element: Atomic # 1 Polarization: -0.12 SS G_CDS: -3.31 Total: -3.42 kcal Atomic # 6 Polarization: -0.08 SS G_CDS: -3.96 Total: -4.04 kcal Atomic # 7 Polarization: -38.81 SS G_CDS: 1.04 Total: -37.77 kcal Atomic # 8 Polarization: -18.56 SS G_CDS: -1.16 Total: -19.73 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -4.67 Total: 17.50 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -35.40 -6.87 -42.27 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812614297.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.451 kcal (2) G-P(sol) polarization free energy of solvation -35.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.80 seconds