Wall clock time and date at job start Tue Mar 31 2020 12:55:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86795 * 120.00164 * 2 1 4 4 H 1.48500 * 109.46983 * 269.99539 * 3 2 1 5 5 H 1.48499 * 109.47218 * 29.99608 * 3 2 1 6 6 H 1.48505 * 109.47256 * 149.99614 * 3 2 1 7 7 C 1.37885 * 119.99875 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99708 * 0.02562 * 7 2 1 9 9 C 1.50696 * 119.99883 * 180.02562 * 7 2 1 10 10 C 1.52998 * 109.46969 * 180.02562 * 9 7 2 11 11 C 1.50706 * 109.47348 * 179.97438 * 10 9 7 12 12 O 1.20830 * 119.99594 * 359.97438 * 11 10 9 13 13 O 1.34222 * 120.00024 * 179.72254 * 11 10 9 14 14 C 1.45201 * 116.99867 * 180.02562 * 13 11 10 15 15 C 1.50695 * 109.47187 * 180.02562 * 14 13 11 16 16 N 1.30048 * 126.18000 * 269.68582 * 15 14 13 17 17 O 1.21288 * 110.50283 * 179.80024 * 16 15 14 18 18 C 1.34223 * 109.69356 * 0.46976 * 17 16 15 19 19 C 1.47605 * 126.68568 * 179.69310 * 18 17 16 20 20 C 1.39644 * 120.18233 * 180.02562 * 19 18 17 21 21 C 1.37862 * 119.90592 * 179.97438 * 20 19 18 22 22 C 1.38495 * 120.28398 * 0.02562 * 21 20 19 23 23 C 1.38117 * 120.37710 * 359.97438 * 22 21 20 24 24 C 1.38638 * 120.08497 * 359.73713 * 23 22 21 25 25 O 1.35737 * 120.14458 * 180.25207 * 24 23 22 26 26 N 1.32212 * 106.62827 * 359.71240 * 18 17 16 27 27 H 0.96999 * 119.99804 * 0.02562 * 1 2 3 28 28 H 1.09000 * 109.47664 * 59.99992 * 9 7 2 29 29 H 1.09002 * 109.46824 * 299.99463 * 9 7 2 30 30 H 1.09001 * 109.47671 * 59.99812 * 10 9 7 31 31 H 1.08998 * 109.47454 * 299.99809 * 10 9 7 32 32 H 1.09009 * 109.46864 * 300.00062 * 14 13 11 33 33 H 1.09001 * 109.47271 * 60.00074 * 14 13 11 34 34 H 1.08000 * 120.05046 * 359.97438 * 20 19 18 35 35 H 1.07999 * 119.85399 * 179.97438 * 21 20 19 36 36 H 1.07995 * 119.80870 * 179.97438 * 22 21 20 37 37 H 1.08003 * 119.96246 * 179.97438 * 23 22 21 38 38 H 0.96693 * 114.00052 * 270.28425 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 6 4.0215 -2.6366 0.0010 11 6 5.5285 -2.6367 0.0009 12 8 6.1327 -1.5903 0.0005 13 8 6.1996 -3.7992 0.0065 14 6 7.6496 -3.7232 0.0066 15 6 8.2255 -5.1158 0.0125 16 7 8.5239 -5.8187 1.0652 17 8 8.9650 -6.9013 0.7421 18 6 9.0014 -6.9937 -0.5965 19 6 9.4769 -8.1450 -1.3883 20 6 9.4547 -8.0946 -2.7837 21 6 9.9006 -9.1730 -3.5177 22 6 10.3706 -10.3075 -2.8771 23 6 10.3978 -10.3700 -1.4976 24 6 9.9586 -9.2921 -0.7443 25 8 9.9896 -9.3503 0.6115 26 7 8.5287 -5.8523 -1.0675 27 1 -0.4850 0.8401 -0.0004 28 1 3.8746 -0.6801 0.8911 29 1 3.8751 -0.6806 -0.8889 30 1 3.6585 -3.1504 -0.8892 31 1 3.6578 -3.1507 0.8907 32 1 7.9858 -3.1951 -0.8857 33 1 7.9853 -3.1871 0.8943 34 1 9.0886 -7.2121 -3.2872 35 1 9.8827 -9.1333 -4.5968 36 1 10.7177 -11.1480 -3.4596 37 1 10.7652 -11.2581 -1.0050 38 1 9.1833 -9.7071 1.0083 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812614297.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:55:41 Heat of formation + Delta-G solvation = -57.326239 kcal Electronic energy + Delta-G solvation = -24584.369194 eV Core-core repulsion = 20587.871522 eV Total energy + Delta-G solvation = -3996.497672 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.109 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -46.85137 -41.69371 -40.78517 -38.21123 -37.76135 -36.94623 -35.67093 -34.66234 -33.48736 -31.68325 -30.83619 -30.02331 -28.13235 -25.87645 -24.61427 -23.75110 -23.38253 -22.35931 -21.59465 -19.68777 -19.58582 -19.27017 -18.89019 -18.41233 -18.02728 -17.43986 -17.31314 -16.57610 -16.52028 -16.29880 -15.55051 -15.37429 -15.12355 -14.83102 -14.76262 -14.24275 -14.08767 -13.81742 -13.73838 -13.39907 -13.20248 -12.95416 -12.94536 -12.62092 -12.45462 -12.28949 -12.08397 -12.00787 -11.88613 -11.79419 -11.61744 -11.51904 -11.42634 -10.79899 -9.93867 -9.67433 -8.32874 -6.37447 -0.75539 0.17255 0.25485 0.93677 1.06340 1.34369 1.36483 1.47953 1.49905 1.64052 2.31019 2.33804 2.59986 2.64262 3.02435 3.10909 3.50146 3.69160 3.83474 3.91165 4.04931 4.11852 4.21868 4.28528 4.33629 4.36879 4.39650 4.59530 4.70466 4.76647 4.93167 5.10586 5.22001 5.25848 5.31252 5.33277 5.43789 5.55915 5.75239 6.19419 6.57387 6.69743 6.71122 6.83004 7.27568 8.82611 Molecular weight = 318.11amu Principal moments of inertia in cm(-1) A = 0.028511 B = 0.002056 C = 0.002015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.843278 B =13618.182828 C =13889.888887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C 0.014 3.986 3 Si 0.940 3.060 4 H -0.266 1.266 5 H -0.279 1.279 6 H -0.257 1.257 7 C -0.533 4.533 8 H 0.051 0.949 9 C 0.002 3.998 10 C -0.089 4.089 11 C 0.476 3.524 12 O -0.530 6.530 13 O -0.357 6.357 14 C 0.157 3.843 15 C 0.163 3.837 16 N -0.379 5.379 17 O 0.109 5.891 18 C 0.238 3.762 19 C -0.093 4.093 20 C -0.056 4.056 21 C -0.131 4.131 22 C -0.059 4.059 23 C -0.149 4.149 24 C 0.148 3.852 25 O -0.502 6.502 26 N -0.481 5.481 27 H 0.268 0.732 28 H 0.020 0.980 29 H 0.020 0.980 30 H 0.116 0.884 31 H 0.114 0.886 32 H 0.114 0.886 33 H 0.108 0.892 34 H 0.136 0.864 35 H 0.163 0.837 36 H 0.170 0.830 37 H 0.162 0.838 38 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.774 -26.107 -5.951 37.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.184 4.184 3 Si 0.764 3.236 4 H -0.192 1.192 5 H -0.205 1.205 6 H -0.181 1.181 7 C -0.571 4.571 8 H 0.069 0.931 9 C -0.036 4.036 10 C -0.127 4.127 11 C 0.321 3.679 12 O -0.419 6.419 13 O -0.273 6.273 14 C 0.082 3.918 15 C -0.110 4.110 16 N -0.084 5.084 17 O 0.044 5.956 18 C 0.022 3.978 19 C -0.096 4.096 20 C -0.076 4.076 21 C -0.148 4.148 22 C -0.077 4.077 23 C -0.167 4.167 24 C 0.100 3.900 25 O -0.316 6.316 26 N -0.215 5.215 27 H 0.077 0.923 28 H 0.038 0.962 29 H 0.038 0.962 30 H 0.134 0.866 31 H 0.132 0.868 32 H 0.132 0.868 33 H 0.126 0.874 34 H 0.154 0.846 35 H 0.180 0.820 36 H 0.187 0.813 37 H 0.180 0.820 38 H 0.276 0.724 Dipole moment (debyes) X Y Z Total from point charges 26.095 -24.763 -5.470 36.388 hybrid contribution -0.496 0.911 0.334 1.090 sum 25.599 -23.852 -5.136 35.363 Atomic orbital electron populations 1.70021 1.07879 1.28242 1.52047 1.25823 0.95542 1.02990 0.94091 0.85802 0.79324 0.79171 0.79285 1.19153 1.20494 1.18102 1.21318 0.90851 0.93921 1.50970 0.93103 1.19344 0.94425 0.92410 0.97408 1.21385 0.83656 1.01048 1.06588 1.24411 0.92272 0.80481 0.70721 1.90634 1.70872 1.33719 1.46634 1.86537 1.20530 1.35776 1.84456 1.20889 0.77496 0.87160 1.06302 1.25144 1.02009 0.99771 0.84028 1.74638 1.15602 0.94129 1.24034 1.85456 1.58762 1.26910 1.24498 1.26687 0.94791 0.94833 0.81462 1.17922 1.08635 0.90174 0.92846 1.21334 0.95717 1.00178 0.90330 1.21509 0.98954 0.92350 1.02018 1.21793 0.93669 0.98462 0.93826 1.21709 1.01987 0.98334 0.94717 1.18700 0.95706 0.91718 0.83828 1.84747 1.44567 1.87101 1.15202 1.72099 1.17906 1.02748 1.28759 0.92268 0.96188 0.96198 0.86608 0.86766 0.86785 0.87384 0.84571 0.81989 0.81256 0.81997 0.72405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.49 13.96 21.45 0.30 -58.19 16 2 C 0.01 0.80 5.47 84.66 0.46 1.26 16 3 Si 0.94 45.59 27.47 68.60 1.88 47.47 16 4 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 5 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 6 H -0.26 -12.18 6.54 99.48 0.65 -11.53 16 7 C -0.53 -30.29 9.66 25.60 0.25 -30.05 16 8 H 0.05 3.06 7.99 -2.91 -0.02 3.04 16 9 C 0.00 0.08 3.33 29.85 0.10 0.18 16 10 C -0.09 -3.44 5.75 29.85 0.17 -3.26 16 11 C 0.48 17.50 7.96 71.24 0.57 18.07 16 12 O -0.53 -21.90 15.73 21.95 0.35 -21.55 16 13 O -0.36 -11.74 10.20 -51.34 -0.52 -12.26 16 14 C 0.16 4.46 6.09 71.23 0.43 4.89 16 15 C 0.16 4.68 7.84 138.53 1.09 5.76 16 16 N -0.38 -10.82 12.15 -58.49 -0.71 -11.53 16 17 O 0.11 2.68 10.00 87.14 0.87 3.56 16 18 C 0.24 5.47 7.96 87.22 0.69 6.16 16 19 C -0.09 -1.53 5.88 -20.02 -0.12 -1.64 16 20 C -0.06 -0.73 9.70 22.52 0.22 -0.51 16 21 C -0.13 -0.86 10.03 22.24 0.22 -0.64 16 22 C -0.06 -0.23 10.03 22.30 0.22 -0.01 16 23 C -0.15 -0.97 9.98 22.34 0.22 -0.75 16 24 C 0.15 1.80 6.72 22.82 0.15 1.96 16 25 O -0.50 -6.03 11.95 -72.90 -0.87 -6.90 16 26 N -0.48 -13.01 11.26 -302.68 -3.41 -16.42 16 27 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 28 H 0.02 0.98 7.16 -2.39 -0.02 0.96 16 29 H 0.02 0.96 7.53 -2.39 -0.02 0.94 16 30 H 0.12 4.10 8.14 -2.39 -0.02 4.08 16 31 H 0.11 4.08 8.14 -2.39 -0.02 4.06 16 32 H 0.11 2.99 8.14 -2.38 -0.02 2.97 16 33 H 0.11 2.88 8.13 -2.39 -0.02 2.86 16 34 H 0.14 1.93 7.88 -2.91 -0.02 1.91 16 35 H 0.16 0.25 8.06 -2.91 -0.02 0.23 16 36 H 0.17 -0.44 8.06 -2.91 -0.02 -0.47 16 37 H 0.16 0.33 8.06 -2.91 -0.02 0.30 16 38 H 0.41 1.66 9.06 -74.06 -0.67 0.99 16 Total: -1.00 -76.38 344.52 2.97 -73.41 By element: Atomic # 1 Polarization: 0.59 SS G_CDS: 0.39 Total: 0.98 kcal Atomic # 6 Polarization: -3.25 SS G_CDS: 4.69 Total: 1.43 kcal Atomic # 7 Polarization: -82.32 SS G_CDS: -3.82 Total: -86.14 kcal Atomic # 8 Polarization: -36.98 SS G_CDS: -0.18 Total: -37.16 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 1.88 Total: 47.47 kcal Total: -76.38 2.97 -73.41 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812614297.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.087 kcal (2) G-P(sol) polarization free energy of solvation -76.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds