Wall clock time and date at job start Tue Mar 31 2020 12:44:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86796 * 119.99832 * 2 1 4 4 H 1.48505 * 109.47056 * 240.00141 * 3 2 1 5 5 H 1.48497 * 109.47482 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47394 * 120.00358 * 3 2 1 7 7 C 1.37874 * 120.00084 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00357 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00246 * 0.02562 * 7 2 1 10 10 O 1.42895 * 109.47407 * 179.97438 * 9 7 2 11 11 C 1.42898 * 114.00203 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.47365 * 180.02562 * 11 10 9 13 13 O 1.45203 * 109.46980 * 64.99879 * 12 11 10 14 14 C 1.34736 * 116.99579 * 180.02562 * 13 12 11 15 15 O 1.21486 * 120.00159 * 359.97438 * 14 13 12 16 16 C 1.47593 * 119.99672 * 179.97438 * 14 13 12 17 17 C 1.40268 * 119.80524 * 0.02562 * 16 14 13 18 18 C 1.36355 * 120.37116 * 179.97438 * 17 16 14 19 19 C 1.39333 * 119.86067 * 359.97438 * 18 17 16 20 20 C 1.46978 * 135.22474 * 179.97438 * 19 18 17 21 21 C 1.46599 * 126.82514 * 0.06093 * 20 19 18 22 22 O 1.21327 * 120.00489 * 180.02562 * 21 20 19 23 23 N 1.31917 * 106.34852 * 180.02562 * 20 19 18 24 24 N 1.28361 * 111.94119 * 0.02562 * 23 20 19 25 25 H 0.96995 * 124.37725 * 179.97438 * 24 23 20 26 26 C 1.37232 * 111.25504 * 359.97438 * 24 23 20 27 27 C 1.38787 * 134.49722 * 179.97438 * 26 24 23 28 28 H 0.96999 * 120.00333 * 0.02562 * 1 2 3 29 29 H 1.09001 * 109.47148 * 59.99760 * 9 7 2 30 30 H 1.08998 * 109.47225 * 300.00134 * 9 7 2 31 31 H 1.09004 * 109.47403 * 59.99690 * 11 10 9 32 32 H 1.09007 * 109.46961 * 300.00095 * 11 10 9 33 33 H 1.09002 * 109.47045 * 304.99756 * 12 11 10 34 34 H 1.09002 * 109.47207 * 184.99631 * 12 11 10 35 35 H 1.08007 * 119.81413 * 0.27157 * 17 16 14 36 36 H 1.08001 * 120.06893 * 180.02562 * 18 17 16 37 37 H 1.08007 * 119.99995 * 359.97438 * 21 20 19 38 38 H 1.08000 * 120.22342 * 0.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6964 -1.2126 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2511 -2.4992 0.0005 10 8 2.1797 -3.5853 0.0005 11 6 1.5652 -4.8754 0.0000 12 6 2.6481 -5.9562 0.0006 13 8 3.3985 -5.8887 1.2419 14 6 4.3969 -6.7791 1.4023 15 8 4.6337 -7.5900 0.5292 16 6 5.2028 -6.7693 2.6387 17 6 4.9255 -5.8316 3.6443 18 6 5.6624 -5.8126 4.7914 19 6 6.6966 -6.7297 4.9669 20 6 7.6753 -7.0083 6.0274 21 6 7.8105 -6.3032 7.3056 22 8 8.6682 -6.6383 8.0956 23 7 8.4073 -8.0194 5.6009 24 7 8.0414 -8.4192 4.4373 25 1 8.4564 -9.1506 3.9539 26 6 6.9872 -7.6781 3.9654 27 6 6.2332 -7.6913 2.8002 28 1 -0.4850 0.8400 -0.0004 29 1 0.6247 -2.5571 -0.8897 30 1 0.6241 -2.5568 0.8903 31 1 0.9452 -4.9822 -0.8903 32 1 0.9447 -4.9827 0.8897 33 1 3.3223 -5.7956 -0.8407 34 1 2.1822 -6.9375 -0.0893 35 1 4.1206 -5.1238 3.5113 36 1 5.4444 -5.0887 5.5627 37 1 7.1471 -5.4848 7.5438 38 1 6.4445 -8.4119 2.0241 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815224851.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:44:19 Heat of formation + Delta-G solvation = -77.100494 kcal Electronic energy + Delta-G solvation = -24577.558245 eV Core-core repulsion = 20580.203097 eV Total energy + Delta-G solvation = -3997.355148 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.109 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.94472 -40.48630 -39.08093 -38.01194 -37.03472 -36.09533 -33.11778 -32.81211 -31.30463 -30.44253 -29.94142 -27.00774 -25.97311 -24.85929 -23.48087 -22.52452 -22.15829 -21.13690 -20.56798 -19.05044 -17.91963 -17.10992 -16.70303 -16.60683 -16.48175 -16.26828 -16.22089 -15.61538 -15.38381 -15.05473 -14.60712 -14.39174 -14.26952 -14.24724 -13.75976 -13.18181 -13.06638 -12.71248 -12.39828 -12.02323 -11.76180 -11.47704 -11.46342 -11.00632 -10.90452 -10.81304 -10.68494 -10.61003 -10.46548 -10.39317 -10.09170 -9.31074 -9.18035 -8.91728 -8.63123 -8.25515 -6.15113 -4.17116 0.02409 0.53459 1.20930 2.07000 2.20194 2.63285 2.69598 3.29917 3.32974 3.36550 3.37621 3.52164 3.90440 4.06137 4.28755 4.43820 4.59496 4.67990 4.71496 4.73953 5.05751 5.10670 5.17549 5.21529 5.36618 5.39163 5.61154 5.78747 5.82293 5.91915 5.92496 6.02861 6.23854 6.38692 6.42943 6.92179 7.00878 7.33058 7.35479 7.66562 7.74410 8.08645 8.47663 8.95012 9.47848 10.96317 Molecular weight = 318.11amu Principal moments of inertia in cm(-1) A = 0.013224 B = 0.002566 C = 0.002223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2116.838717 B =10911.342387 C =12590.996844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.057 3.943 3 Si 0.909 3.091 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.516 4.516 8 H 0.066 0.934 9 C 0.195 3.805 10 O -0.391 6.391 11 C 0.061 3.939 12 C 0.075 3.925 13 O -0.332 6.332 14 C 0.509 3.491 15 O -0.512 6.512 16 C -0.085 4.085 17 C -0.073 4.073 18 C -0.070 4.070 19 C -0.089 4.089 20 C -0.058 4.058 21 C 0.426 3.574 22 O -0.450 6.450 23 N -0.167 5.167 24 N -0.405 5.405 25 H 0.450 0.550 26 C 0.045 3.955 27 C -0.043 4.043 28 H 0.265 0.735 29 H 0.006 0.994 30 H 0.008 0.992 31 H 0.064 0.936 32 H 0.051 0.949 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.155 0.845 36 H 0.145 0.855 37 H 0.132 0.868 38 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.666 -16.762 9.455 22.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.144 4.144 3 Si 0.736 3.264 4 H -0.200 1.200 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.554 4.554 8 H 0.085 0.915 9 C 0.121 3.879 10 O -0.311 6.311 11 C -0.017 4.017 12 C 0.002 3.998 13 O -0.247 6.247 14 C 0.354 3.646 15 O -0.402 6.402 16 C -0.089 4.089 17 C -0.093 4.093 18 C -0.090 4.090 19 C -0.096 4.096 20 C -0.225 4.225 21 C 0.280 3.720 22 O -0.317 6.317 23 N 0.000 5.000 24 N -0.127 5.127 25 H 0.296 0.704 26 C -0.067 4.067 27 C -0.064 4.064 28 H 0.075 0.925 29 H 0.024 0.976 30 H 0.026 0.974 31 H 0.082 0.918 32 H 0.069 0.931 33 H 0.097 0.903 34 H 0.098 0.902 35 H 0.173 0.827 36 H 0.163 0.837 37 H 0.148 0.852 38 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 12.091 -17.662 9.947 23.603 hybrid contribution -0.480 0.754 -0.999 1.340 sum 11.610 -16.909 8.948 22.378 Atomic orbital electron populations 1.69944 1.06108 1.27358 1.50361 1.24942 0.94981 0.99444 0.95071 0.86388 0.79314 0.81842 0.78894 1.20032 1.21156 1.19924 1.21001 0.94059 0.89278 1.51098 0.91547 1.20234 0.88716 0.83445 0.95526 1.87917 1.35327 1.12582 1.95236 1.22331 0.93168 0.85452 1.00714 1.23288 0.93650 0.99005 0.83852 1.86637 1.42974 1.53338 1.41790 1.20916 0.79016 0.78386 0.86295 1.90825 1.68145 1.38182 1.43028 1.18891 0.97208 0.98951 0.93867 1.21262 0.99397 0.97047 0.91552 1.20177 0.93142 0.97461 0.98247 1.19858 0.98185 0.97977 0.93558 1.24030 0.98434 0.99973 1.00058 1.23143 0.83875 0.84083 0.80874 1.90595 1.31416 1.62118 1.47614 1.73189 1.19762 1.10608 0.96406 1.43282 1.26394 1.29970 1.13083 0.70378 1.18879 0.94043 0.96557 0.97183 1.20066 0.92955 0.98676 0.94716 0.92543 0.97636 0.97447 0.91801 0.93070 0.90265 0.90209 0.82695 0.83694 0.85164 0.83622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.20 13.29 55.43 0.74 -25.47 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 3 Si 0.91 21.31 29.54 -169.99 -5.02 16.29 16 4 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 5 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 6 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 7 C -0.52 -14.77 9.43 -34.44 -0.32 -15.10 16 8 H 0.07 1.89 7.81 -52.49 -0.41 1.48 16 9 C 0.19 5.13 5.69 36.01 0.20 5.34 16 10 O -0.39 -8.98 10.30 -38.80 -0.40 -9.38 16 11 C 0.06 1.04 6.33 37.16 0.24 1.27 16 12 C 0.08 1.10 5.85 37.16 0.22 1.31 16 13 O -0.33 -5.01 9.41 -43.37 -0.41 -5.42 16 14 C 0.51 6.98 7.89 34.55 0.27 7.25 16 15 O -0.51 -7.79 16.10 -19.25 -0.31 -8.10 16 16 C -0.09 -0.94 5.87 -104.96 -0.62 -1.56 16 17 C -0.07 -0.72 9.54 -39.50 -0.38 -1.09 16 18 C -0.07 -0.55 10.02 -39.85 -0.40 -0.95 16 19 C -0.09 -0.79 6.45 -104.92 -0.68 -1.47 16 20 C -0.06 -0.53 7.31 -80.92 -0.59 -1.12 16 21 C 0.43 3.28 11.73 34.10 0.40 3.68 16 22 O -0.45 -5.28 17.92 5.52 0.10 -5.18 16 23 N -0.17 -1.65 12.10 34.36 0.42 -1.23 16 24 N -0.41 -3.08 6.85 32.33 0.22 -2.86 16 25 H 0.45 1.84 8.96 -190.51 -1.71 0.13 16 26 C 0.04 0.40 7.36 -84.21 -0.62 -0.22 16 27 C -0.04 -0.40 9.61 -39.02 -0.38 -0.77 16 28 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 29 H 0.01 0.16 8.14 -51.93 -0.42 -0.27 16 30 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 31 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 33 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 34 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 35 H 0.16 1.53 7.58 -52.48 -0.40 1.13 16 36 H 0.15 0.69 8.06 -52.49 -0.42 0.27 16 37 H 0.13 0.39 8.06 -52.48 -0.42 -0.03 16 38 H 0.15 1.18 7.62 -52.49 -0.40 0.78 16 LS Contribution 350.63 15.07 5.28 5.28 Total: -1.00 -35.99 350.63 -7.56 -43.55 By element: Atomic # 1 Polarization: -0.12 SS G_CDS: -5.43 Total: -5.55 kcal Atomic # 6 Polarization: 0.82 SS G_CDS: -2.75 Total: -1.93 kcal Atomic # 7 Polarization: -30.93 SS G_CDS: 1.37 Total: -29.56 kcal Atomic # 8 Polarization: -27.06 SS G_CDS: -1.02 Total: -28.08 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -35.99 -7.56 -43.55 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815224851.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.550 kcal (2) G-P(sol) polarization free energy of solvation -35.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds