Wall clock time and date at job start Tue Mar 31 2020 12:44:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86796 * 119.99832 * 2 1 4 4 H 1.48505 * 109.47056 * 240.00141 * 3 2 1 5 5 H 1.48497 * 109.47482 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47394 * 120.00358 * 3 2 1 7 7 C 1.37874 * 120.00084 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00357 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00246 * 0.02562 * 7 2 1 10 10 O 1.42895 * 109.47407 * 179.97438 * 9 7 2 11 11 C 1.42898 * 114.00203 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.47365 * 180.02562 * 11 10 9 13 13 O 1.45203 * 109.46980 * 64.99879 * 12 11 10 14 14 C 1.34736 * 116.99579 * 180.02562 * 13 12 11 15 15 O 1.21486 * 120.00159 * 359.97438 * 14 13 12 16 16 C 1.47593 * 119.99672 * 179.97438 * 14 13 12 17 17 C 1.40268 * 119.80524 * 0.02562 * 16 14 13 18 18 C 1.36355 * 120.37116 * 179.97438 * 17 16 14 19 19 C 1.39333 * 119.86067 * 359.97438 * 18 17 16 20 20 C 1.46978 * 135.22474 * 179.97438 * 19 18 17 21 21 C 1.46599 * 126.82514 * 0.06093 * 20 19 18 22 22 O 1.21327 * 120.00489 * 180.02562 * 21 20 19 23 23 N 1.31917 * 106.34852 * 180.02562 * 20 19 18 24 24 N 1.28361 * 111.94119 * 0.02562 * 23 20 19 25 25 H 0.96995 * 124.37725 * 179.97438 * 24 23 20 26 26 C 1.37232 * 111.25504 * 359.97438 * 24 23 20 27 27 C 1.38787 * 134.49722 * 179.97438 * 26 24 23 28 28 H 0.96999 * 120.00333 * 0.02562 * 1 2 3 29 29 H 1.09001 * 109.47148 * 59.99760 * 9 7 2 30 30 H 1.08998 * 109.47225 * 300.00134 * 9 7 2 31 31 H 1.09004 * 109.47403 * 59.99690 * 11 10 9 32 32 H 1.09007 * 109.46961 * 300.00095 * 11 10 9 33 33 H 1.09002 * 109.47045 * 304.99756 * 12 11 10 34 34 H 1.09002 * 109.47207 * 184.99631 * 12 11 10 35 35 H 1.08007 * 119.81413 * 0.27157 * 17 16 14 36 36 H 1.08001 * 120.06893 * 180.02562 * 18 17 16 37 37 H 1.08007 * 119.99995 * 359.97438 * 21 20 19 38 38 H 1.08000 * 120.22342 * 0.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6964 -1.2126 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2511 -2.4992 0.0005 10 8 2.1797 -3.5853 0.0005 11 6 1.5652 -4.8754 0.0000 12 6 2.6481 -5.9562 0.0006 13 8 3.3985 -5.8887 1.2419 14 6 4.3969 -6.7791 1.4023 15 8 4.6337 -7.5900 0.5292 16 6 5.2028 -6.7693 2.6387 17 6 4.9255 -5.8316 3.6443 18 6 5.6624 -5.8126 4.7914 19 6 6.6966 -6.7297 4.9669 20 6 7.6753 -7.0083 6.0274 21 6 7.8105 -6.3032 7.3056 22 8 8.6682 -6.6383 8.0956 23 7 8.4073 -8.0194 5.6009 24 7 8.0414 -8.4192 4.4373 25 1 8.4564 -9.1506 3.9539 26 6 6.9872 -7.6781 3.9654 27 6 6.2332 -7.6913 2.8002 28 1 -0.4850 0.8400 -0.0004 29 1 0.6247 -2.5571 -0.8897 30 1 0.6241 -2.5568 0.8903 31 1 0.9452 -4.9822 -0.8903 32 1 0.9447 -4.9827 0.8897 33 1 3.3223 -5.7956 -0.8407 34 1 2.1822 -6.9375 -0.0893 35 1 4.1206 -5.1238 3.5113 36 1 5.4444 -5.0887 5.5627 37 1 7.1471 -5.4848 7.5438 38 1 6.4445 -8.4119 2.0241 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815224851.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:44:19 Heat of formation + Delta-G solvation = -101.414496 kcal Electronic energy + Delta-G solvation = -24578.612579 eV Core-core repulsion = 20580.203097 eV Total energy + Delta-G solvation = -3998.409483 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.109 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.62350 -41.55497 -39.78847 -38.96296 -38.44173 -37.39383 -34.91176 -33.81104 -32.25063 -31.28670 -31.06699 -28.99140 -26.67027 -25.74703 -24.50839 -24.18977 -23.47494 -22.06270 -21.27591 -19.82469 -18.70048 -18.66544 -18.07702 -17.89421 -17.43657 -17.07577 -17.06368 -16.87009 -16.42248 -16.27423 -16.21733 -15.64958 -15.20096 -14.98962 -14.92287 -14.45685 -14.25330 -13.77763 -13.70346 -13.24526 -13.17354 -12.89208 -12.66612 -12.52358 -12.37951 -12.15892 -11.99392 -11.73912 -11.68915 -11.37102 -11.25684 -11.05250 -10.85661 -10.23045 -10.06977 -9.29797 -8.28957 -6.40766 -0.73211 -0.17659 0.55299 1.29635 1.34646 1.43833 1.47678 1.56120 1.76588 2.00381 2.37329 2.62408 2.93402 3.05309 3.09685 3.22679 3.39836 3.53140 3.94298 3.95496 4.03203 4.08999 4.14720 4.33936 4.46023 4.52364 4.55950 4.70028 4.76458 4.90067 4.95010 5.17852 5.20675 5.22401 5.34516 5.57276 5.57758 5.82328 5.98901 6.34871 6.52819 6.60388 6.69246 6.83334 7.30827 8.82839 Molecular weight = 318.11amu Principal moments of inertia in cm(-1) A = 0.013224 B = 0.002566 C = 0.002223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2116.838717 B =10911.342387 C =12590.996844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.008 3.992 3 Si 0.980 3.020 4 H -0.268 1.268 5 H -0.276 1.276 6 H -0.263 1.263 7 C -0.549 4.549 8 H 0.061 0.939 9 C 0.208 3.792 10 O -0.408 6.408 11 C 0.053 3.947 12 C 0.079 3.921 13 O -0.346 6.346 14 C 0.510 3.490 15 O -0.533 6.533 16 C -0.103 4.103 17 C -0.084 4.084 18 C -0.056 4.056 19 C -0.090 4.090 20 C -0.066 4.066 21 C 0.434 3.566 22 O -0.496 6.496 23 N -0.190 5.190 24 N -0.393 5.393 25 H 0.463 0.537 26 C 0.040 3.960 27 C -0.036 4.036 28 H 0.271 0.729 29 H -0.010 1.010 30 H -0.008 1.008 31 H 0.081 0.919 32 H 0.060 0.940 33 H 0.073 0.927 34 H 0.111 0.889 35 H 0.150 0.850 36 H 0.181 0.819 37 H 0.187 0.813 38 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.311 -16.184 10.310 22.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.190 4.190 3 Si 0.803 3.197 4 H -0.193 1.193 5 H -0.201 1.201 6 H -0.188 1.188 7 C -0.586 4.586 8 H 0.079 0.921 9 C 0.134 3.866 10 O -0.328 6.328 11 C -0.024 4.024 12 C 0.006 3.994 13 O -0.262 6.262 14 C 0.357 3.643 15 O -0.424 6.424 16 C -0.107 4.107 17 C -0.104 4.104 18 C -0.076 4.076 19 C -0.097 4.097 20 C -0.233 4.233 21 C 0.292 3.708 22 O -0.366 6.366 23 N -0.024 5.024 24 N -0.117 5.117 25 H 0.312 0.688 26 C -0.072 4.072 27 C -0.058 4.058 28 H 0.079 0.921 29 H 0.008 0.992 30 H 0.010 0.990 31 H 0.099 0.901 32 H 0.078 0.922 33 H 0.091 0.909 34 H 0.129 0.871 35 H 0.168 0.832 36 H 0.199 0.801 37 H 0.203 0.797 38 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 12.739 -17.121 10.791 23.913 hybrid contribution -0.685 0.452 -1.261 1.505 sum 12.054 -16.668 9.529 22.670 Atomic orbital electron populations 1.70047 1.07660 1.28691 1.50463 1.25903 0.95926 1.03221 0.93980 0.85283 0.78137 0.76931 0.79385 1.19313 1.20142 1.18781 1.21355 0.94103 0.90892 1.52274 0.92087 1.19856 0.88534 0.84334 0.93914 1.87860 1.35446 1.14140 1.95337 1.22652 0.94430 0.83291 1.01984 1.23253 0.93107 0.99376 0.83693 1.86626 1.43622 1.54103 1.41851 1.21340 0.78537 0.77567 0.86899 1.90804 1.68686 1.38937 1.43987 1.18857 0.97924 1.00531 0.93352 1.21278 0.99964 0.97012 0.92104 1.20484 0.91684 0.97279 0.98125 1.20024 0.98283 0.98056 0.93361 1.24457 0.98197 0.99848 1.00788 1.24046 0.83301 0.84109 0.79330 1.90593 1.33624 1.63600 1.48735 1.73189 1.20569 1.11394 0.97213 1.43324 1.25870 1.29965 1.12556 0.68834 1.18933 0.94279 0.96917 0.97118 1.20070 0.92353 0.98295 0.95054 0.92051 0.99206 0.99028 0.90072 0.92219 0.90879 0.87102 0.83178 0.80124 0.79702 0.82822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.32 13.29 21.45 0.28 -54.03 16 2 C 0.01 0.47 5.46 84.65 0.46 0.93 16 3 Si 0.98 43.10 29.54 68.60 2.03 45.13 16 4 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 5 H -0.28 -11.65 7.11 99.48 0.71 -10.94 16 6 H -0.26 -11.07 7.11 99.48 0.71 -10.36 16 7 C -0.55 -31.74 9.43 25.60 0.24 -31.50 16 8 H 0.06 3.50 7.81 -2.91 -0.02 3.48 16 9 C 0.21 11.22 5.69 71.24 0.41 11.62 16 10 O -0.41 -18.98 10.30 -145.57 -1.50 -20.48 16 11 C 0.05 1.79 6.33 71.98 0.46 2.24 16 12 C 0.08 2.25 5.85 71.98 0.42 2.67 16 13 O -0.35 -10.37 9.41 -53.80 -0.51 -10.88 16 14 C 0.51 13.86 7.89 70.29 0.55 14.41 16 15 O -0.53 -16.08 16.10 19.88 0.32 -15.76 16 16 C -0.10 -2.20 5.87 -20.08 -0.12 -2.32 16 17 C -0.08 -1.54 9.54 22.32 0.21 -1.33 16 18 C -0.06 -0.74 10.02 22.09 0.22 -0.52 16 19 C -0.09 -1.41 6.45 -20.06 -0.13 -1.54 16 20 C -0.07 -1.09 7.31 43.61 0.32 -0.77 16 21 C 0.43 5.67 11.73 70.00 0.82 6.49 16 22 O -0.50 -11.07 17.92 -3.18 -0.06 -11.13 16 23 N -0.19 -3.54 12.10 -45.22 -0.55 -4.09 16 24 N -0.39 -5.51 6.85 -51.64 -0.35 -5.87 16 25 H 0.46 3.31 8.96 -220.05 -1.97 1.34 16 26 C 0.04 0.64 7.36 39.10 0.29 0.93 16 27 C -0.04 -0.64 9.61 22.63 0.22 -0.43 16 28 H 0.27 14.71 8.31 -92.71 -0.77 13.94 16 29 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 30 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 31 H 0.08 2.45 8.14 -2.38 -0.02 2.43 16 32 H 0.06 1.91 8.14 -2.38 -0.02 1.89 16 33 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 34 H 0.11 2.47 8.14 -2.39 -0.02 2.45 16 35 H 0.15 2.87 7.58 -2.91 -0.02 2.85 16 36 H 0.18 0.99 8.06 -2.91 -0.02 0.97 16 37 H 0.19 0.31 8.06 -2.91 -0.02 0.28 16 38 H 0.15 2.38 7.62 -2.91 -0.02 2.36 16 Total: -1.00 -78.33 350.63 3.19 -75.14 By element: Atomic # 1 Polarization: 1.90 SS G_CDS: -0.85 Total: 1.05 kcal Atomic # 6 Polarization: -3.47 SS G_CDS: 4.37 Total: 0.91 kcal Atomic # 7 Polarization: -63.37 SS G_CDS: -0.62 Total: -63.98 kcal Atomic # 8 Polarization: -56.50 SS G_CDS: -1.74 Total: -58.24 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.13 kcal Total: -78.33 3.19 -75.14 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815224851.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.270 kcal (2) G-P(sol) polarization free energy of solvation -78.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds