Wall clock time and date at job start Tue Mar 31 2020 12:50:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86796 * 119.99904 * 2 1 4 4 H 1.48506 * 109.46905 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47568 * 300.00641 * 3 2 1 6 6 H 1.48502 * 109.47019 * 60.01105 * 3 2 1 7 7 C 1.38805 * 119.99914 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00071 * 204.79423 * 7 2 1 9 9 N 1.36942 * 120.00275 * 24.79256 * 7 2 1 10 10 C 1.46502 * 120.00196 * 188.56352 * 9 7 2 11 11 C 1.53005 * 109.46888 * 272.15650 * 10 9 7 12 12 N 1.46502 * 109.46888 * 180.02562 * 11 10 9 13 13 C 1.34520 * 124.45840 * 269.97533 * 12 11 10 14 14 O 1.21442 * 125.71562 * 0.04080 * 13 12 11 15 15 C 1.47820 * 108.57676 * 180.02562 * 13 12 11 16 16 C 1.38566 * 134.29407 * 180.02562 * 15 13 12 17 17 C 1.38610 * 119.72257 * 179.97438 * 16 15 13 18 18 C 1.38233 * 120.45415 * 0.02649 * 17 16 15 19 19 C 1.38617 * 120.46037 * 359.95630 * 18 17 16 20 20 C 1.38567 * 119.72131 * 0.03145 * 19 18 17 21 21 C 1.34526 * 124.45826 * 90.00289 * 12 11 10 22 22 O 1.21446 * 125.71410 * 0.02562 * 21 12 11 23 23 C 1.46505 * 119.99786 * 8.56758 * 9 7 2 24 24 C 1.50700 * 109.46484 * 269.99881 * 23 9 7 25 25 O 1.20820 * 120.00375 * 359.97438 * 24 23 9 26 26 O 1.34235 * 119.99599 * 179.97438 * 24 23 9 27 27 H 0.97001 * 119.99513 * 359.97438 * 1 2 3 28 28 H 1.08998 * 109.46942 * 152.16231 * 10 9 7 29 29 H 1.08992 * 109.47114 * 32.15214 * 10 9 7 30 30 H 1.08998 * 109.47361 * 59.99949 * 11 10 9 31 31 H 1.09005 * 109.47151 * 299.99835 * 11 10 9 32 32 H 1.08004 * 120.14047 * 359.67488 * 16 15 13 33 33 H 1.08003 * 119.77494 * 179.97438 * 17 16 15 34 34 H 1.07999 * 119.76706 * 179.97438 * 18 17 16 35 35 H 1.07997 * 120.13479 * 180.02562 * 19 18 17 36 36 H 1.09000 * 109.47125 * 29.99613 * 23 9 7 37 37 H 1.08994 * 109.47111 * 150.00138 * 23 9 7 38 38 H 0.96694 * 116.99798 * 179.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8914 2.3966 -1.2124 6 1 1.8916 2.3963 1.2127 7 6 2.0102 -1.2021 -0.0005 8 1 3.0156 -1.2454 0.3917 9 7 1.4202 -2.3332 -0.4983 10 6 2.0724 -3.6342 -0.3304 11 6 3.0354 -3.8760 -1.4945 12 7 3.6872 -5.1773 -1.3269 13 6 4.8424 -5.3704 -0.6652 14 8 5.4999 -4.5071 -0.1199 15 6 5.1774 -6.8093 -0.7126 16 6 6.2195 -7.5770 -0.2179 17 6 6.2340 -8.9443 -0.4453 18 6 5.2168 -9.5461 -1.1622 19 6 4.1678 -8.7909 -1.6628 20 6 4.1400 -7.4230 -1.4430 21 6 3.2095 -6.3364 -1.8148 22 8 2.1856 -6.4678 -2.4546 23 6 0.1368 -2.2422 -1.1990 24 6 -0.9882 -2.3954 -0.2081 25 8 -0.7432 -2.5639 0.9629 26 8 -2.2627 -2.3448 -0.6266 27 1 -0.4849 0.8401 0.0004 28 1 1.3171 -4.4199 -0.3145 29 1 2.6270 -3.6442 0.6079 30 1 3.7907 -3.0903 -1.5105 31 1 2.4809 -3.8660 -2.4329 32 1 7.0196 -7.1113 0.3384 33 1 7.0460 -9.5434 -0.0604 34 1 5.2394 -10.6123 -1.3331 35 1 3.3756 -9.2666 -2.2218 36 1 0.0589 -1.2722 -1.6900 37 1 0.0736 -3.0336 -1.9457 38 1 -2.9499 -2.4485 0.0457 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000833067457.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:50:02 Heat of formation + Delta-G solvation = -71.752083 kcal Electronic energy + Delta-G solvation = -26306.111111 eV Core-core repulsion = 22308.987887 eV Total energy + Delta-G solvation = -3997.123224 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.109 amu Computer time = 2.21 seconds Orbital eigenvalues (eV) -42.27401 -38.75422 -38.58290 -38.52977 -36.23093 -35.53747 -34.39335 -32.74082 -31.41140 -31.20088 -28.80652 -27.03653 -25.15281 -24.82090 -22.91940 -22.26019 -21.52537 -20.06524 -19.74907 -17.86238 -17.25740 -16.96636 -16.68617 -16.45462 -16.16626 -15.34798 -15.20087 -15.02672 -14.74413 -14.46593 -14.26955 -14.10128 -13.91466 -13.76656 -13.37958 -13.04237 -12.64780 -12.54630 -12.40040 -11.91877 -11.66447 -11.32260 -11.04115 -10.74060 -10.53187 -10.48700 -10.25385 -10.13665 -9.99140 -9.92553 -9.79518 -9.50895 -9.47596 -9.13583 -8.55983 -7.21032 -5.98117 -3.26539 -0.09120 0.69439 1.89461 2.43711 3.00258 3.35221 3.35687 3.43710 3.47161 3.51311 3.94184 4.21723 4.33284 4.34999 4.55572 4.57962 4.76151 4.93295 5.07751 5.16451 5.31161 5.42459 5.46507 5.67826 5.68208 5.78792 5.82686 5.86986 6.01606 6.24429 6.30457 6.32991 6.66763 6.86155 6.94670 7.04106 7.25175 7.67159 7.74598 7.90132 8.08931 8.96846 9.46256 9.65879 10.04747 11.13695 Molecular weight = 318.11amu Principal moments of inertia in cm(-1) A = 0.017537 B = 0.003698 C = 0.003215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1596.204392 B = 7569.506993 C = 8707.027332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.002 3.998 3 Si 0.910 3.090 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.292 1.292 7 C -0.257 4.257 8 H 0.086 0.914 9 N -0.564 5.564 10 C 0.139 3.861 11 C 0.089 3.911 12 N -0.568 5.568 13 C 0.569 3.431 14 O -0.455 6.455 15 C -0.135 4.135 16 C -0.049 4.049 17 C -0.100 4.100 18 C -0.101 4.101 19 C -0.048 4.048 20 C -0.137 4.137 21 C 0.571 3.429 22 O -0.462 6.462 23 C 0.187 3.813 24 C 0.481 3.519 25 O -0.519 6.519 26 O -0.543 6.543 27 H 0.258 0.742 28 H 0.045 0.955 29 H 0.056 0.944 30 H 0.100 0.900 31 H 0.091 0.909 32 H 0.141 0.859 33 H 0.140 0.860 34 H 0.140 0.860 35 H 0.141 0.859 36 H 0.117 0.883 37 H 0.054 0.946 38 H 0.380 0.620 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.449 -18.539 -4.955 21.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.195 4.195 3 Si 0.739 3.261 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.219 1.219 7 C -0.385 4.385 8 H 0.103 0.897 9 N -0.284 5.284 10 C 0.011 3.989 11 C -0.033 4.033 12 N -0.310 5.310 13 C 0.357 3.643 14 O -0.326 6.326 15 C -0.139 4.139 16 C -0.067 4.067 17 C -0.118 4.118 18 C -0.119 4.119 19 C -0.067 4.067 20 C -0.141 4.141 21 C 0.359 3.641 22 O -0.333 6.333 23 C 0.058 3.942 24 C 0.321 3.679 25 O -0.405 6.405 26 O -0.353 6.353 27 H 0.069 0.931 28 H 0.063 0.937 29 H 0.075 0.925 30 H 0.118 0.882 31 H 0.110 0.890 32 H 0.159 0.841 33 H 0.157 0.843 34 H 0.157 0.843 35 H 0.159 0.841 36 H 0.135 0.865 37 H 0.072 0.928 38 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 9.502 -17.859 -4.970 20.831 hybrid contribution -0.261 0.979 0.757 1.265 sum 9.241 -16.880 -4.213 19.700 Atomic orbital electron populations 1.69849 1.05360 1.25918 1.53762 1.24769 0.95211 0.98562 1.00997 0.86097 0.79467 0.83253 0.77274 1.20067 1.21341 1.21869 1.19399 0.97292 0.84942 1.36883 0.89659 1.43983 1.17909 1.02570 1.63956 1.20996 0.94315 0.88409 0.95218 1.22857 0.97968 0.79660 1.02829 1.46704 1.23341 1.10830 1.50132 1.18362 0.80232 0.88213 0.77466 1.90828 1.52374 1.49753 1.39648 1.20717 0.97388 0.94221 1.01583 1.20813 0.96355 0.93072 0.96488 1.21439 0.98802 0.94105 0.97437 1.21436 0.93321 1.00555 0.96552 1.20803 0.98126 0.90830 0.96951 1.20704 0.96742 0.94970 1.01644 1.18364 0.84511 0.83086 0.78137 1.90803 1.22772 1.84534 1.35220 1.20466 0.80907 1.02590 0.90230 1.25162 0.81968 0.69733 0.91031 1.90502 1.84013 1.46090 1.19931 1.84628 1.18432 1.86561 1.45723 0.93145 0.93652 0.92544 0.88153 0.89038 0.84085 0.84257 0.84267 0.84116 0.86544 0.92760 0.76470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.56 8.95 55.49 0.50 -25.06 16 2 C 0.00 0.06 4.90 -17.43 -0.09 -0.03 16 3 Si 0.91 21.59 29.62 -169.99 -5.04 16.55 16 4 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 7 C -0.26 -6.90 9.70 -15.06 -0.15 -7.05 16 8 H 0.09 2.28 7.94 -52.48 -0.42 1.86 16 9 N -0.56 -13.83 2.02 -174.61 -0.35 -14.18 16 10 C 0.14 2.93 5.99 -4.04 -0.02 2.91 16 11 C 0.09 1.57 6.06 -4.04 -0.02 1.55 16 12 N -0.57 -9.08 2.62 -117.61 -0.31 -9.39 16 13 C 0.57 8.79 8.02 -12.46 -0.10 8.69 16 14 O -0.46 -8.24 17.68 5.42 0.10 -8.15 16 15 C -0.14 -1.62 6.40 -104.83 -0.67 -2.29 16 16 C -0.05 -0.42 10.09 -39.32 -0.40 -0.82 16 17 C -0.10 -0.60 10.04 -39.45 -0.40 -1.00 16 18 C -0.10 -0.60 10.04 -39.44 -0.40 -1.00 16 19 C -0.05 -0.41 10.09 -39.32 -0.40 -0.81 16 20 C -0.14 -1.62 6.40 -104.84 -0.67 -2.29 16 21 C 0.57 8.58 8.02 -12.46 -0.10 8.48 16 22 O -0.46 -7.93 17.68 5.41 0.10 -7.84 16 23 C 0.19 4.41 5.53 -5.19 -0.03 4.38 16 24 C 0.48 11.94 6.39 36.01 0.23 12.17 16 25 O -0.52 -14.72 16.91 -18.74 -0.32 -15.04 16 26 O -0.54 -11.44 13.42 -39.27 -0.53 -11.97 16 27 H 0.26 7.14 8.31 -40.82 -0.34 6.81 16 28 H 0.05 0.95 8.06 -51.93 -0.42 0.54 16 29 H 0.06 1.26 8.06 -51.93 -0.42 0.84 16 30 H 0.10 1.84 7.97 -51.93 -0.41 1.43 16 31 H 0.09 1.56 7.96 -51.93 -0.41 1.15 16 32 H 0.14 1.02 8.06 -52.48 -0.42 0.59 16 33 H 0.14 0.42 8.06 -52.48 -0.42 0.00 16 34 H 0.14 0.41 8.06 -52.49 -0.42 -0.01 16 35 H 0.14 0.97 8.06 -52.49 -0.42 0.55 16 36 H 0.12 2.92 6.30 -51.93 -0.33 2.59 16 37 H 0.05 1.11 8.07 -51.93 -0.42 0.69 16 38 H 0.38 6.43 9.10 45.56 0.41 6.85 16 LS Contribution 341.92 15.07 5.15 5.15 Total: -1.00 -35.06 341.92 -7.14 -42.21 By element: Atomic # 1 Polarization: 8.03 SS G_CDS: -3.24 Total: 4.80 kcal Atomic # 6 Polarization: 26.12 SS G_CDS: -3.21 Total: 22.91 kcal Atomic # 7 Polarization: -48.46 SS G_CDS: -0.16 Total: -48.63 kcal Atomic # 8 Polarization: -42.34 SS G_CDS: -0.65 Total: -42.99 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.04 Total: 16.55 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -35.06 -7.14 -42.21 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833067457.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.544 kcal (2) G-P(sol) polarization free energy of solvation -35.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.21 seconds