Wall clock time and date at job start Tue Mar 31 2020 12:05:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35904 * 117.00197 * 2 1 4 4 C 1.38489 * 119.97964 * 0.25951 * 3 2 1 5 5 C 1.39540 * 119.78723 * 180.22980 * 4 3 2 6 6 C 1.47739 * 120.12422 * 179.76888 * 5 4 3 7 7 O 1.21470 * 119.99620 * 359.72116 * 6 5 4 8 8 O 1.34713 * 120.00032 * 179.72462 * 6 5 4 9 9 C 1.45202 * 116.99844 * 179.97438 * 8 6 5 10 10 H 1.08999 * 109.46971 * 30.00304 * 9 8 6 11 11 C 1.52996 * 109.47175 * 270.00117 * 9 8 6 12 12 C 1.50698 * 109.46697 * 149.99688 * 9 8 6 13 13 H 1.08003 * 120.00248 * 35.00756 * 12 9 8 14 14 C 1.37879 * 120.00061 * 214.99746 * 12 9 8 15 15 N 1.31514 * 120.00065 * 184.92370 * 14 12 9 16 16 Si 1.86799 * 120.00086 * 4.91820 * 14 12 9 17 17 H 1.48496 * 109.46932 * 84.83083 * 16 14 12 18 18 H 1.48491 * 109.47212 * 204.83377 * 16 14 12 19 19 H 1.48507 * 109.46996 * 324.83552 * 16 14 12 20 20 C 1.39654 * 119.75267 * 359.48974 * 5 4 3 21 21 C 1.37947 * 119.96218 * 0.27842 * 20 5 4 22 22 C 1.38302 * 120.21311 * 359.97438 * 21 20 5 23 23 C 1.50702 * 119.87581 * 180.02562 * 22 21 20 24 24 F 1.39898 * 109.47219 * 359.97438 * 23 22 21 25 25 F 1.39902 * 109.46971 * 119.99983 * 23 22 21 26 26 F 1.39901 * 109.46929 * 240.00055 * 23 22 21 27 27 H 1.08998 * 109.47707 * 60.00037 * 1 2 3 28 28 H 1.09007 * 109.47253 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.47166 * 299.99543 * 1 2 3 30 30 H 1.07996 * 120.10947 * 359.97438 * 4 3 2 31 31 H 1.08992 * 109.47218 * 295.03411 * 11 9 8 32 32 H 1.09005 * 109.46733 * 175.03555 * 11 9 8 33 33 H 1.09000 * 109.47120 * 55.03506 * 11 9 8 34 34 H 0.96997 * 119.99915 * 179.97438 * 15 14 12 35 35 H 1.08002 * 120.01983 * 180.30189 * 20 5 4 36 36 H 1.07997 * 119.89745 * 179.97438 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3721 0.0054 5 6 1.9291 3.6133 0.0006 6 6 1.1313 4.8568 0.0011 7 8 -0.0821 4.7998 0.0008 8 8 1.7495 6.0536 0.0020 9 6 0.9025 7.2330 0.0020 10 1 -0.0326 7.0088 0.5152 11 6 0.6059 7.6479 -1.4405 12 6 1.6086 8.3584 0.7134 13 1 2.6806 8.4606 0.6317 14 6 0.8859 9.2577 1.4684 15 7 1.4871 10.2947 2.0096 16 14 -0.9472 9.0033 1.7225 17 1 -1.1651 8.0806 2.8654 18 1 -1.5929 10.3091 2.0104 19 1 -1.5407 8.4178 0.4935 20 6 3.3242 3.6756 0.0010 21 6 4.0658 2.5125 0.0005 22 6 3.4323 1.2831 0.0000 23 6 4.2499 0.0172 0.0000 24 9 5.6109 0.3411 -0.0001 25 9 3.9486 -0.7326 1.1421 26 9 3.9493 -0.7321 -1.1425 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8901 30 1 0.2128 2.3173 0.0093 31 1 1.5310 7.9565 -1.9273 32 1 -0.1000 8.4784 -1.4418 33 1 0.1755 6.8042 -1.9800 34 1 0.9786 10.9275 2.5404 35 1 3.8222 4.6340 0.0022 36 1 5.1447 2.5619 0.0004 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000850843688.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:05:05 Heat of formation + Delta-G solvation = -248.937168 kcal Electronic energy + Delta-G solvation = -26613.101882 eV Core-core repulsion = 22034.145844 eV Total energy + Delta-G solvation = -4578.956037 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.091 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -50.24018 -47.78366 -47.66874 -40.77048 -39.60096 -37.67948 -36.00558 -33.23672 -32.50699 -30.77686 -30.48733 -27.78484 -26.81636 -25.49294 -23.46367 -22.65171 -21.58363 -20.07790 -19.04348 -18.57823 -18.54064 -18.13854 -17.14691 -16.65406 -16.19326 -16.14166 -15.87790 -15.30644 -14.97158 -14.68104 -14.56960 -14.39956 -14.13245 -13.94020 -13.85516 -13.82553 -13.53737 -13.12523 -12.95789 -12.70426 -12.51980 -12.32632 -11.95016 -11.82667 -11.55850 -11.41451 -11.19503 -11.08382 -10.80637 -10.24828 -9.91822 -9.66059 -9.54900 -9.24917 -8.80947 -8.70203 -6.36151 -4.41000 0.24558 1.01345 2.50135 2.56378 2.76096 3.10141 3.22386 3.22787 3.27204 3.51913 3.59116 3.86260 4.18210 4.30781 4.50942 4.63705 4.81989 4.89296 4.92366 4.94572 5.07602 5.13223 5.23954 5.36496 5.71715 5.88322 6.05726 6.06850 6.24419 6.32184 6.40432 6.56437 6.80833 7.04191 7.16979 7.38565 8.07586 8.43019 8.73253 9.22083 10.74885 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.022354 B = 0.003252 C = 0.003032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.253594 B = 8608.488367 C = 9233.892615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.308 6.308 3 C 0.165 3.835 4 C -0.155 4.155 5 C -0.040 4.040 6 C 0.492 3.508 7 O -0.514 6.514 8 O -0.337 6.337 9 C 0.182 3.818 10 H 0.048 0.952 11 C -0.153 4.153 12 C -0.520 4.520 13 H 0.087 0.913 14 C 0.084 3.916 15 N -0.878 5.878 16 Si 0.869 3.131 17 H -0.270 1.270 18 H -0.280 1.280 19 H -0.260 1.260 20 C -0.100 4.100 21 C -0.048 4.048 22 C -0.200 4.200 23 C 0.519 3.481 24 F -0.178 7.178 25 F -0.173 7.173 26 F -0.174 7.174 27 H 0.063 0.937 28 H 0.106 0.894 29 H 0.063 0.937 30 H 0.154 0.846 31 H 0.059 0.941 32 H 0.063 0.937 33 H 0.030 0.970 34 H 0.271 0.729 35 H 0.159 0.841 36 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.210 -20.354 -4.674 21.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.220 6.220 3 C 0.119 3.881 4 C -0.174 4.174 5 C -0.042 4.042 6 C 0.336 3.664 7 O -0.406 6.406 8 O -0.253 6.253 9 C 0.129 3.871 10 H 0.066 0.934 11 C -0.211 4.211 12 C -0.557 4.557 13 H 0.105 0.895 14 C -0.121 4.121 15 N -0.514 5.514 16 Si 0.695 3.305 17 H -0.195 1.195 18 H -0.206 1.206 19 H -0.185 1.185 20 C -0.118 4.118 21 C -0.066 4.066 22 C -0.202 4.202 23 C 0.465 3.535 24 F -0.159 7.159 25 F -0.155 7.155 26 F -0.155 7.155 27 H 0.081 0.919 28 H 0.124 0.876 29 H 0.082 0.918 30 H 0.171 0.829 31 H 0.078 0.922 32 H 0.082 0.918 33 H 0.049 0.951 34 H 0.082 0.918 35 H 0.176 0.824 36 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 1.926 -20.355 -4.557 20.947 hybrid contribution -1.244 -0.031 0.259 1.271 sum 0.682 -20.386 -4.297 20.845 Atomic orbital electron populations 1.23222 0.77028 1.04622 1.02297 1.86130 1.22568 1.25424 1.87917 1.18303 0.90327 0.85122 0.94378 1.21332 1.01458 0.90026 1.04596 1.19463 0.93828 0.91358 0.99519 1.21036 0.86359 0.85468 0.73553 1.90766 1.15096 1.88394 1.46319 1.86744 1.43314 1.14130 1.81062 1.21103 0.91245 0.79841 0.94882 0.93375 1.22247 1.01408 0.99982 0.97476 1.20776 0.97160 1.07066 1.30737 0.89473 1.24908 0.98578 0.94792 0.93843 1.69844 1.36797 1.12406 1.32389 0.86971 0.85437 0.78167 0.79972 1.19517 1.20583 1.18490 1.21544 0.92363 0.99691 0.98183 1.20906 1.01263 0.89559 0.94827 1.19523 0.91209 0.93738 1.15740 1.17955 0.77471 0.84004 0.74105 1.93163 1.33898 1.92586 1.96283 1.93222 1.92940 1.78386 1.50904 1.93218 1.92967 1.78435 1.50885 0.91881 0.87568 0.91834 0.82877 0.92198 0.91794 0.95108 0.91841 0.82385 0.82920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.81 101.05 0.99 1.17 16 2 O -0.31 -3.48 9.37 -19.44 -0.18 -3.66 16 3 C 0.17 2.05 6.56 -39.28 -0.26 1.79 16 4 C -0.16 -2.06 8.58 -39.00 -0.33 -2.40 16 5 C -0.04 -0.61 5.87 -105.00 -0.62 -1.23 16 6 C 0.49 9.56 7.87 34.61 0.27 9.83 16 7 O -0.51 -10.98 15.60 -19.24 -0.30 -11.28 16 8 O -0.34 -7.32 9.11 -40.53 -0.37 -7.69 16 9 C 0.18 4.37 2.22 -27.89 -0.06 4.31 16 10 H 0.05 1.21 4.31 -51.93 -0.22 0.99 16 11 C -0.15 -3.26 9.53 37.16 0.35 -2.91 16 12 C -0.52 -14.21 9.25 -34.44 -0.32 -14.53 16 13 H 0.09 2.55 8.06 -52.48 -0.42 2.13 16 14 C 0.08 2.32 5.47 -17.82 -0.10 2.22 16 15 N -0.88 -25.40 13.96 55.43 0.77 -24.63 16 16 Si 0.87 20.76 26.99 -169.99 -4.59 16.17 16 17 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 18 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 19 H -0.26 -6.05 6.82 56.52 0.39 -5.66 16 20 C -0.10 -1.29 9.61 -39.16 -0.38 -1.67 16 21 C -0.05 -0.53 9.41 -39.66 -0.37 -0.90 16 22 C -0.20 -2.40 5.39 -104.38 -0.56 -2.96 16 23 C 0.52 6.05 2.98 36.01 0.11 6.16 16 24 F -0.18 -1.94 15.96 2.25 0.04 -1.90 16 25 F -0.17 -2.13 16.94 2.25 0.04 -2.09 16 26 F -0.17 -2.11 16.94 2.25 0.04 -2.07 16 27 H 0.06 0.45 7.67 -51.93 -0.40 0.06 16 28 H 0.11 0.58 8.14 -51.92 -0.42 0.15 16 29 H 0.06 0.47 7.65 -51.93 -0.40 0.07 16 30 H 0.15 1.90 5.88 -52.49 -0.31 1.59 16 31 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 32 H 0.06 1.34 8.14 -51.93 -0.42 0.91 16 33 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 35 H 0.16 1.99 7.61 -52.49 -0.40 1.59 16 36 H 0.15 1.31 7.14 -52.49 -0.37 0.93 16 LS Contribution 327.65 15.07 4.94 4.94 Total: -1.00 -30.54 327.65 -4.26 -34.79 By element: Atomic # 1 Polarization: 1.91 SS G_CDS: -3.37 Total: -1.46 kcal Atomic # 6 Polarization: 0.15 SS G_CDS: -1.27 Total: -1.12 kcal Atomic # 7 Polarization: -25.40 SS G_CDS: 0.77 Total: -24.63 kcal Atomic # 8 Polarization: -21.78 SS G_CDS: -0.85 Total: -22.63 kcal Atomic # 9 Polarization: -6.18 SS G_CDS: 0.11 Total: -6.06 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -4.59 Total: 16.17 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -30.54 -4.26 -34.79 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850843688.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -214.144 kcal (2) G-P(sol) polarization free energy of solvation -30.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -244.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -248.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds