Wall clock time and date at job start Tue Mar 31 2020 12:05:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35904 * 117.00197 * 2 1 4 4 C 1.38489 * 119.97964 * 0.25951 * 3 2 1 5 5 C 1.39540 * 119.78723 * 180.22980 * 4 3 2 6 6 C 1.47739 * 120.12422 * 179.76888 * 5 4 3 7 7 O 1.21470 * 119.99620 * 359.72116 * 6 5 4 8 8 O 1.34713 * 120.00032 * 179.72462 * 6 5 4 9 9 C 1.45202 * 116.99844 * 179.97438 * 8 6 5 10 10 H 1.08999 * 109.46971 * 30.00304 * 9 8 6 11 11 C 1.52996 * 109.47175 * 270.00117 * 9 8 6 12 12 C 1.50698 * 109.46697 * 149.99688 * 9 8 6 13 13 H 1.08003 * 120.00248 * 35.00756 * 12 9 8 14 14 C 1.37879 * 120.00061 * 214.99746 * 12 9 8 15 15 N 1.31514 * 120.00065 * 184.92370 * 14 12 9 16 16 Si 1.86799 * 120.00086 * 4.91820 * 14 12 9 17 17 H 1.48496 * 109.46932 * 84.83083 * 16 14 12 18 18 H 1.48491 * 109.47212 * 204.83377 * 16 14 12 19 19 H 1.48507 * 109.46996 * 324.83552 * 16 14 12 20 20 C 1.39654 * 119.75267 * 359.48974 * 5 4 3 21 21 C 1.37947 * 119.96218 * 0.27842 * 20 5 4 22 22 C 1.38302 * 120.21311 * 359.97438 * 21 20 5 23 23 C 1.50702 * 119.87581 * 180.02562 * 22 21 20 24 24 F 1.39898 * 109.47219 * 359.97438 * 23 22 21 25 25 F 1.39902 * 109.46971 * 119.99983 * 23 22 21 26 26 F 1.39901 * 109.46929 * 240.00055 * 23 22 21 27 27 H 1.08998 * 109.47707 * 60.00037 * 1 2 3 28 28 H 1.09007 * 109.47253 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.47166 * 299.99543 * 1 2 3 30 30 H 1.07996 * 120.10947 * 359.97438 * 4 3 2 31 31 H 1.08992 * 109.47218 * 295.03411 * 11 9 8 32 32 H 1.09005 * 109.46733 * 175.03555 * 11 9 8 33 33 H 1.09000 * 109.47120 * 55.03506 * 11 9 8 34 34 H 0.96997 * 119.99915 * 179.97438 * 15 14 12 35 35 H 1.08002 * 120.01983 * 180.30189 * 20 5 4 36 36 H 1.07997 * 119.89745 * 179.97438 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3721 0.0054 5 6 1.9291 3.6133 0.0006 6 6 1.1313 4.8568 0.0011 7 8 -0.0821 4.7998 0.0008 8 8 1.7495 6.0536 0.0020 9 6 0.9025 7.2330 0.0020 10 1 -0.0326 7.0088 0.5152 11 6 0.6059 7.6479 -1.4405 12 6 1.6086 8.3584 0.7134 13 1 2.6806 8.4606 0.6317 14 6 0.8859 9.2577 1.4684 15 7 1.4871 10.2947 2.0096 16 14 -0.9472 9.0033 1.7225 17 1 -1.1651 8.0806 2.8654 18 1 -1.5929 10.3091 2.0104 19 1 -1.5407 8.4178 0.4935 20 6 3.3242 3.6756 0.0010 21 6 4.0658 2.5125 0.0005 22 6 3.4323 1.2831 0.0000 23 6 4.2499 0.0172 0.0000 24 9 5.6109 0.3411 -0.0001 25 9 3.9486 -0.7326 1.1421 26 9 3.9493 -0.7321 -1.1425 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8901 30 1 0.2128 2.3173 0.0093 31 1 1.5310 7.9565 -1.9273 32 1 -0.1000 8.4784 -1.4418 33 1 0.1755 6.8042 -1.9800 34 1 0.9786 10.9275 2.5404 35 1 3.8222 4.6340 0.0022 36 1 5.1447 2.5619 0.0004 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000850843688.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:05:04 Heat of formation + Delta-G solvation = -265.962601 kcal Electronic energy + Delta-G solvation = -26613.840160 eV Core-core repulsion = 22034.145844 eV Total energy + Delta-G solvation = -4579.694315 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.091 amu Computer time = 1.60 seconds Orbital eigenvalues (eV) -51.16161 -48.68725 -48.61043 -41.90813 -40.97874 -38.67845 -37.67260 -35.21056 -33.66929 -32.50502 -31.55363 -28.50674 -27.92068 -27.45982 -24.70171 -23.62080 -22.99329 -21.65161 -20.17624 -19.54347 -19.50496 -19.43526 -18.80175 -18.15644 -17.39486 -17.18405 -17.01074 -16.77126 -16.28051 -15.85181 -15.57011 -15.49011 -15.04938 -15.03769 -14.79886 -14.78136 -14.74748 -14.64604 -14.44700 -14.25098 -14.00333 -13.57108 -13.11100 -13.07762 -12.94347 -12.83012 -12.60972 -12.43884 -12.25748 -11.99600 -11.66177 -11.46401 -11.21892 -10.89093 -10.61060 -9.65399 -8.47553 -6.57700 -0.86048 0.04518 1.23590 1.26580 1.29710 1.38985 1.55507 1.67750 1.99867 2.19158 2.33624 2.63610 2.89246 2.93532 3.37699 3.53319 3.61053 3.72783 3.91438 4.11635 4.19115 4.26893 4.31367 4.44624 4.54485 4.56566 4.65867 4.71541 4.85139 4.89661 5.04949 5.28314 5.30187 5.35943 5.52200 5.94861 6.09991 6.51656 6.73764 7.09649 8.67442 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.022354 B = 0.003252 C = 0.003032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.253594 B = 8608.488367 C = 9233.892615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.315 6.315 3 C 0.167 3.833 4 C -0.152 4.152 5 C -0.060 4.060 6 C 0.492 3.508 7 O -0.537 6.537 8 O -0.346 6.346 9 C 0.183 3.817 10 H 0.039 0.961 11 C -0.148 4.148 12 C -0.531 4.531 13 H 0.052 0.948 14 C 0.037 3.963 15 N -0.921 5.921 16 Si 0.925 3.075 17 H -0.269 1.269 18 H -0.268 1.268 19 H -0.249 1.249 20 C -0.099 4.099 21 C -0.033 4.033 22 C -0.201 4.201 23 C 0.523 3.477 24 F -0.171 7.171 25 F -0.177 7.177 26 F -0.176 7.176 27 H 0.069 0.931 28 H 0.132 0.868 29 H 0.066 0.934 30 H 0.159 0.841 31 H 0.064 0.936 32 H 0.066 0.934 33 H 0.048 0.952 34 H 0.276 0.724 35 H 0.159 0.841 36 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.660 -22.287 -5.181 22.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.228 6.228 3 C 0.120 3.880 4 C -0.171 4.171 5 C -0.062 4.062 6 C 0.338 3.662 7 O -0.429 6.429 8 O -0.262 6.262 9 C 0.129 3.871 10 H 0.057 0.943 11 C -0.206 4.206 12 C -0.568 4.568 13 H 0.071 0.929 14 C -0.164 4.164 15 N -0.558 5.558 16 Si 0.748 3.252 17 H -0.194 1.194 18 H -0.192 1.192 19 H -0.172 1.172 20 C -0.118 4.118 21 C -0.051 4.051 22 C -0.203 4.203 23 C 0.469 3.531 24 F -0.153 7.153 25 F -0.158 7.158 26 F -0.157 7.157 27 H 0.087 0.913 28 H 0.150 0.850 29 H 0.085 0.915 30 H 0.177 0.823 31 H 0.083 0.917 32 H 0.085 0.915 33 H 0.067 0.933 34 H 0.086 0.914 35 H 0.177 0.823 36 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 1.379 -22.309 -5.075 22.921 hybrid contribution -0.978 0.416 0.401 1.136 sum 0.401 -21.893 -4.675 22.390 Atomic orbital electron populations 1.23531 0.75231 1.06552 1.02771 1.86142 1.24429 1.24688 1.87560 1.18334 0.90549 0.85245 0.93839 1.21330 1.01862 0.89560 1.04366 1.19255 0.94367 0.89865 1.02675 1.21643 0.86536 0.85642 0.72395 1.90740 1.16131 1.88567 1.47501 1.86682 1.43029 1.14684 1.81776 1.20912 0.90369 0.79769 0.96007 0.94276 1.22159 1.01917 1.00719 0.95805 1.20904 0.95814 1.08741 1.31352 0.92949 1.25634 1.02945 0.94318 0.93523 1.69949 1.38754 1.13487 1.33651 0.86069 0.80267 0.78633 0.80233 1.19444 1.19233 1.17234 1.21579 0.91559 1.00553 0.98072 1.21134 1.02475 0.88392 0.93076 1.19734 0.91337 0.94243 1.14974 1.17846 0.77649 0.83687 0.73908 1.93179 1.33351 1.92499 1.96238 1.93218 1.93010 1.78456 1.51108 1.93217 1.93025 1.78470 1.50993 0.91276 0.85009 0.91494 0.82328 0.91691 0.91521 0.93313 0.91409 0.82338 0.80093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.17 9.81 113.37 1.11 1.28 16 2 O -0.32 -6.45 9.37 -92.47 -0.87 -7.31 16 3 C 0.17 3.82 6.56 22.47 0.15 3.97 16 4 C -0.15 -3.84 8.58 22.64 0.19 -3.65 16 5 C -0.06 -1.78 5.87 -20.11 -0.12 -1.90 16 6 C 0.49 18.93 7.87 70.33 0.55 19.49 16 7 O -0.54 -22.62 15.60 19.93 0.31 -22.31 16 8 O -0.35 -15.08 9.11 -56.23 -0.51 -15.60 16 9 C 0.18 8.78 2.22 29.85 0.07 8.84 16 10 H 0.04 1.95 4.31 -2.39 -0.01 1.94 16 11 C -0.15 -6.17 9.53 71.98 0.69 -5.48 16 12 C -0.53 -29.63 9.25 25.60 0.24 -29.39 16 13 H 0.05 3.20 8.06 -2.91 -0.02 3.18 16 14 C 0.04 2.08 5.47 84.66 0.46 2.54 16 15 N -0.92 -54.30 13.96 21.45 0.30 -54.00 16 16 Si 0.93 42.57 26.99 68.60 1.85 44.43 16 17 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 18 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 19 H -0.25 -10.88 6.82 99.48 0.68 -10.20 16 20 C -0.10 -2.45 9.61 22.54 0.22 -2.24 16 21 C -0.03 -0.66 9.41 22.22 0.21 -0.45 16 22 C -0.20 -4.36 5.39 -19.71 -0.11 -4.46 16 23 C 0.52 10.96 2.98 71.24 0.21 11.17 16 24 F -0.17 -3.27 15.96 44.97 0.72 -2.55 16 25 F -0.18 -3.97 16.94 44.97 0.76 -3.21 16 26 F -0.18 -3.87 16.94 44.97 0.76 -3.11 16 27 H 0.07 0.85 7.67 -2.39 -0.02 0.84 16 28 H 0.13 1.07 8.14 -2.38 -0.02 1.05 16 29 H 0.07 0.86 7.65 -2.38 -0.02 0.84 16 30 H 0.16 3.74 5.88 -2.91 -0.02 3.72 16 31 H 0.06 2.59 8.14 -2.39 -0.02 2.57 16 32 H 0.07 2.70 8.14 -2.38 -0.02 2.68 16 33 H 0.05 1.82 8.14 -2.39 -0.02 1.81 16 34 H 0.28 15.07 8.31 -92.71 -0.77 14.30 16 35 H 0.16 3.87 7.61 -2.91 -0.02 3.85 16 36 H 0.18 2.52 7.14 -2.91 -0.02 2.50 16 Total: -1.00 -65.72 327.65 8.31 -57.40 By element: Atomic # 1 Polarization: 5.42 SS G_CDS: 1.11 Total: 6.53 kcal Atomic # 6 Polarization: -4.15 SS G_CDS: 3.87 Total: -0.27 kcal Atomic # 7 Polarization: -54.30 SS G_CDS: 0.30 Total: -54.00 kcal Atomic # 8 Polarization: -44.15 SS G_CDS: -1.07 Total: -45.22 kcal Atomic # 9 Polarization: -11.11 SS G_CDS: 2.24 Total: -8.87 kcal Atomic # 14 Polarization: 42.57 SS G_CDS: 1.85 Total: 44.43 kcal Total: -65.72 8.31 -57.40 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850843688.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -208.558 kcal (2) G-P(sol) polarization free energy of solvation -65.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -274.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -265.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.60 seconds