Wall clock time and date at job start Tue Mar 31 2020 12:05:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35907 * 116.99968 * 2 1 4 4 C 1.38486 * 119.98493 * 0.24818 * 3 2 1 5 5 C 1.39535 * 119.78852 * 180.23256 * 4 3 2 6 6 C 1.47741 * 120.11974 * 179.77147 * 5 4 3 7 7 O 1.21462 * 120.00328 * 359.72470 * 6 5 4 8 8 O 1.34715 * 119.99684 * 179.72637 * 6 5 4 9 9 C 1.45196 * 116.99791 * 179.97438 * 8 6 5 10 10 H 1.08997 * 109.47356 * 330.00347 * 9 8 6 11 11 C 1.52999 * 109.47338 * 90.00221 * 9 8 6 12 12 C 1.50706 * 109.47154 * 209.99935 * 9 8 6 13 13 H 1.07998 * 119.99604 * 0.02562 * 12 9 8 14 14 C 1.37880 * 119.99702 * 179.97438 * 12 9 8 15 15 N 1.31513 * 119.99399 * 180.02562 * 14 12 9 16 16 Si 1.86792 * 120.00236 * 0.02562 * 14 12 9 17 17 H 1.48500 * 109.47445 * 89.99945 * 16 14 12 18 18 H 1.48504 * 109.47007 * 209.99616 * 16 14 12 19 19 H 1.48501 * 109.47243 * 329.99925 * 16 14 12 20 20 C 1.39653 * 119.75444 * 359.49757 * 5 4 3 21 21 C 1.37954 * 119.96175 * 0.27266 * 20 5 4 22 22 C 1.38294 * 120.20933 * 359.97438 * 21 20 5 23 23 C 1.50703 * 119.87100 * 180.02562 * 22 21 20 24 24 F 1.39899 * 109.47363 * 359.97438 * 23 22 21 25 25 F 1.39897 * 109.46983 * 120.00402 * 23 22 21 26 26 F 1.39903 * 109.46786 * 239.99931 * 23 22 21 27 27 H 1.08996 * 109.47345 * 300.00501 * 1 2 3 28 28 H 1.08998 * 109.46953 * 60.00543 * 1 2 3 29 29 H 1.08999 * 109.47291 * 180.02562 * 1 2 3 30 30 H 1.08000 * 120.09987 * 0.02562 * 4 3 2 31 31 H 1.08994 * 109.47571 * 179.97438 * 11 9 8 32 32 H 1.09006 * 109.47147 * 299.99995 * 11 9 8 33 33 H 1.09002 * 109.47235 * 59.99621 * 11 9 8 34 34 H 0.97004 * 119.99650 * 179.97438 * 15 14 12 35 35 H 1.08005 * 120.02242 * 180.30073 * 20 5 4 36 36 H 1.07999 * 119.89337 * 180.02562 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2914 2.3722 0.0052 5 6 1.9291 3.6133 0.0003 6 6 1.1313 4.8567 0.0007 7 8 -0.0820 4.7999 0.0002 8 8 1.7495 6.0536 0.0015 9 6 0.9026 7.2330 0.0012 10 1 -0.0319 7.0092 -0.5133 11 6 0.6041 7.6469 1.4436 12 6 1.6095 8.3590 -0.7084 13 1 2.5964 8.2036 -1.1185 14 6 0.9958 9.5872 -0.8348 15 7 1.6126 10.5697 -1.4545 16 14 -0.7114 9.8557 -0.1260 17 1 -0.5962 10.3354 1.2746 18 1 -1.4310 10.8692 -0.9387 19 1 -1.4645 8.5760 -0.1506 20 6 3.3242 3.6756 0.0007 21 6 4.0659 2.5124 0.0004 22 6 3.4323 1.2832 0.0001 23 6 4.2500 0.0173 0.0003 24 9 5.6109 0.3412 0.0002 25 9 3.9485 -0.7323 1.1424 26 9 3.9493 -0.7322 -1.1421 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 0.2128 2.3172 0.0097 31 1 -0.0313 8.5324 1.4435 32 1 0.0927 6.8324 1.9569 33 1 1.5385 7.8707 1.9582 34 1 1.1807 11.4337 -1.5438 35 1 3.8223 4.6340 0.0018 36 1 5.1447 2.5620 0.0012 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000850843689.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:05:09 Heat of formation + Delta-G solvation = -240.038087 kcal Electronic energy + Delta-G solvation = -26578.828652 eV Core-core repulsion = 22000.258508 eV Total energy + Delta-G solvation = -4578.570144 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.091 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -50.25696 -47.80031 -47.68525 -40.81250 -39.68140 -37.71923 -36.11513 -33.35812 -32.53949 -30.80804 -30.53544 -27.80919 -26.87036 -25.35525 -23.53828 -22.68687 -21.74524 -20.21704 -19.06390 -18.59484 -18.55969 -18.11839 -16.99476 -16.68896 -16.21276 -16.16099 -15.93382 -15.42809 -15.00029 -14.80094 -14.58572 -14.54475 -14.14825 -13.96888 -13.87088 -13.84649 -13.59330 -13.23273 -13.00796 -12.83590 -12.40933 -12.35005 -12.08476 -11.88031 -11.73550 -11.49186 -11.43712 -10.98472 -10.35265 -10.25441 -9.93573 -9.73209 -9.60087 -9.23682 -8.77141 -8.72962 -6.30290 -4.33662 0.20606 0.98240 2.48080 2.51064 2.73608 3.10867 3.12585 3.25488 3.26352 3.46712 3.56843 3.84147 4.19229 4.28894 4.48003 4.61281 4.80325 4.87624 4.90688 4.97922 5.01069 5.04701 5.22165 5.33259 5.65862 5.84273 6.01416 6.04771 6.18116 6.21119 6.29459 6.47153 6.78239 6.88285 7.18090 7.37740 8.04227 8.40523 8.75468 9.25837 10.81629 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.024759 B = 0.003113 C = 0.002881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.612388 B = 8993.249075 C = 9717.953624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.307 6.307 3 C 0.166 3.834 4 C -0.154 4.154 5 C -0.040 4.040 6 C 0.495 3.505 7 O -0.509 6.509 8 O -0.330 6.330 9 C 0.192 3.808 10 H 0.048 0.952 11 C -0.171 4.171 12 C -0.528 4.528 13 H 0.089 0.911 14 C 0.081 3.919 15 N -0.886 5.886 16 Si 0.879 3.121 17 H -0.272 1.272 18 H -0.289 1.289 19 H -0.263 1.263 20 C -0.100 4.100 21 C -0.047 4.047 22 C -0.199 4.199 23 C 0.519 3.481 24 F -0.178 7.178 25 F -0.173 7.173 26 F -0.173 7.173 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.106 0.894 30 H 0.154 0.846 31 H 0.058 0.942 32 H 0.037 0.963 33 H 0.065 0.935 34 H 0.270 0.730 35 H 0.159 0.841 36 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.165 -21.238 4.189 21.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.220 6.220 3 C 0.119 3.881 4 C -0.173 4.173 5 C -0.041 4.041 6 C 0.338 3.662 7 O -0.400 6.400 8 O -0.245 6.245 9 C 0.138 3.862 10 H 0.066 0.934 11 C -0.228 4.228 12 C -0.565 4.565 13 H 0.107 0.893 14 C -0.122 4.122 15 N -0.522 5.522 16 Si 0.708 3.292 17 H -0.199 1.199 18 H -0.216 1.216 19 H -0.187 1.187 20 C -0.118 4.118 21 C -0.065 4.065 22 C -0.201 4.201 23 C 0.465 3.535 24 F -0.159 7.159 25 F -0.155 7.155 26 F -0.154 7.154 27 H 0.081 0.919 28 H 0.082 0.918 29 H 0.125 0.875 30 H 0.172 0.828 31 H 0.076 0.924 32 H 0.056 0.944 33 H 0.084 0.916 34 H 0.081 0.919 35 H 0.176 0.824 36 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 1.895 -21.225 4.120 21.704 hybrid contribution -1.171 0.320 0.382 1.272 sum 0.724 -20.905 4.502 21.396 Atomic orbital electron populations 1.23224 0.76994 1.04658 1.02306 1.86134 1.22595 1.25382 1.87892 1.18299 0.90323 0.85133 0.94340 1.21320 1.01476 0.89979 1.04541 1.19371 0.93762 0.91163 0.99826 1.20960 0.86316 0.85289 0.73618 1.90778 1.15014 1.88299 1.45924 1.86569 1.42342 1.14226 1.81398 1.21024 0.91329 0.79875 0.93943 0.93433 1.22541 1.01535 1.00054 0.98697 1.20749 1.05566 0.93345 1.36888 0.89332 1.24717 0.97602 0.95293 0.94622 1.69829 1.38048 1.02976 1.41361 0.86979 0.84755 0.78676 0.78836 1.19908 1.21575 1.18737 1.21550 0.92333 0.99733 0.98162 1.20910 1.01296 0.89539 0.94766 1.19532 0.91221 0.93760 1.15598 1.17952 0.77478 0.83995 0.74120 1.93165 1.33883 1.92583 1.96282 1.93219 1.92941 1.78402 1.50914 1.93223 1.92958 1.78400 1.50861 0.91875 0.91805 0.87546 0.82827 0.92352 0.94368 0.91585 0.91949 0.82363 0.82875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.81 101.05 0.99 1.16 16 2 O -0.31 -3.38 9.37 -19.45 -0.18 -3.56 16 3 C 0.17 1.99 6.56 -39.27 -0.26 1.73 16 4 C -0.15 -1.99 8.58 -39.01 -0.33 -2.32 16 5 C -0.04 -0.59 5.87 -105.00 -0.62 -1.21 16 6 C 0.49 9.37 7.87 34.61 0.27 9.64 16 7 O -0.51 -10.63 15.60 -19.24 -0.30 -10.93 16 8 O -0.33 -7.06 9.11 -40.53 -0.37 -7.43 16 9 C 0.19 4.62 2.16 -27.88 -0.06 4.56 16 10 H 0.05 1.21 6.22 -51.93 -0.32 0.89 16 11 C -0.17 -3.72 9.03 37.16 0.34 -3.39 16 12 C -0.53 -14.56 9.48 -34.44 -0.33 -14.88 16 13 H 0.09 2.62 8.06 -52.49 -0.42 2.20 16 14 C 0.08 2.26 5.45 -17.82 -0.10 2.17 16 15 N -0.89 -25.93 13.96 55.43 0.77 -25.16 16 16 Si 0.88 20.95 24.37 -169.99 -4.14 16.81 16 17 H -0.27 -6.23 6.87 56.52 0.39 -5.84 16 18 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 19 H -0.26 -6.15 6.53 56.52 0.37 -5.78 16 20 C -0.10 -1.26 9.61 -39.16 -0.38 -1.63 16 21 C -0.05 -0.51 9.41 -39.67 -0.37 -0.88 16 22 C -0.20 -2.32 5.39 -104.38 -0.56 -2.89 16 23 C 0.52 5.92 2.98 36.01 0.11 6.03 16 24 F -0.18 -1.90 15.96 2.25 0.04 -1.86 16 25 F -0.17 -2.07 16.94 2.25 0.04 -2.03 16 26 F -0.17 -2.09 16.94 2.25 0.04 -2.05 16 27 H 0.06 0.44 7.65 -51.93 -0.40 0.04 16 28 H 0.06 0.45 7.67 -51.93 -0.40 0.05 16 29 H 0.11 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.15 1.84 5.88 -52.49 -0.31 1.53 16 31 H 0.06 1.30 3.27 -51.93 -0.17 1.13 16 32 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 34 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 35 H 0.16 1.93 7.61 -52.48 -0.40 1.53 16 36 H 0.15 1.27 7.14 -52.49 -0.37 0.90 16 LS Contribution 321.18 15.07 4.84 4.84 Total: -1.00 -30.82 321.18 -3.81 -34.63 By element: Atomic # 1 Polarization: 1.88 SS G_CDS: -3.24 Total: -1.36 kcal Atomic # 6 Polarization: -0.60 SS G_CDS: -1.30 Total: -1.90 kcal Atomic # 7 Polarization: -25.93 SS G_CDS: 0.77 Total: -25.16 kcal Atomic # 8 Polarization: -21.07 SS G_CDS: -0.85 Total: -21.92 kcal Atomic # 9 Polarization: -6.05 SS G_CDS: 0.11 Total: -5.94 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -4.14 Total: 16.81 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -30.82 -3.81 -34.63 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850843689.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -205.406 kcal (2) G-P(sol) polarization free energy of solvation -30.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -236.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -240.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds