Wall clock time and date at job start Tue Mar 31 2020 12:05:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35907 * 116.99968 * 2 1 4 4 C 1.38486 * 119.98493 * 0.24818 * 3 2 1 5 5 C 1.39535 * 119.78852 * 180.23256 * 4 3 2 6 6 C 1.47741 * 120.11974 * 179.77147 * 5 4 3 7 7 O 1.21462 * 120.00328 * 359.72470 * 6 5 4 8 8 O 1.34715 * 119.99684 * 179.72637 * 6 5 4 9 9 C 1.45196 * 116.99791 * 179.97438 * 8 6 5 10 10 H 1.08997 * 109.47356 * 330.00347 * 9 8 6 11 11 C 1.52999 * 109.47338 * 90.00221 * 9 8 6 12 12 C 1.50706 * 109.47154 * 209.99935 * 9 8 6 13 13 H 1.07998 * 119.99604 * 0.02562 * 12 9 8 14 14 C 1.37880 * 119.99702 * 179.97438 * 12 9 8 15 15 N 1.31513 * 119.99399 * 180.02562 * 14 12 9 16 16 Si 1.86792 * 120.00236 * 0.02562 * 14 12 9 17 17 H 1.48500 * 109.47445 * 89.99945 * 16 14 12 18 18 H 1.48504 * 109.47007 * 209.99616 * 16 14 12 19 19 H 1.48501 * 109.47243 * 329.99925 * 16 14 12 20 20 C 1.39653 * 119.75444 * 359.49757 * 5 4 3 21 21 C 1.37954 * 119.96175 * 0.27266 * 20 5 4 22 22 C 1.38294 * 120.20933 * 359.97438 * 21 20 5 23 23 C 1.50703 * 119.87100 * 180.02562 * 22 21 20 24 24 F 1.39899 * 109.47363 * 359.97438 * 23 22 21 25 25 F 1.39897 * 109.46983 * 120.00402 * 23 22 21 26 26 F 1.39903 * 109.46786 * 239.99931 * 23 22 21 27 27 H 1.08996 * 109.47345 * 300.00501 * 1 2 3 28 28 H 1.08998 * 109.46953 * 60.00543 * 1 2 3 29 29 H 1.08999 * 109.47291 * 180.02562 * 1 2 3 30 30 H 1.08000 * 120.09987 * 0.02562 * 4 3 2 31 31 H 1.08994 * 109.47571 * 179.97438 * 11 9 8 32 32 H 1.09006 * 109.47147 * 299.99995 * 11 9 8 33 33 H 1.09002 * 109.47235 * 59.99621 * 11 9 8 34 34 H 0.97004 * 119.99650 * 179.97438 * 15 14 12 35 35 H 1.08005 * 120.02242 * 180.30073 * 20 5 4 36 36 H 1.07999 * 119.89337 * 180.02562 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2914 2.3722 0.0052 5 6 1.9291 3.6133 0.0003 6 6 1.1313 4.8567 0.0007 7 8 -0.0820 4.7999 0.0002 8 8 1.7495 6.0536 0.0015 9 6 0.9026 7.2330 0.0012 10 1 -0.0319 7.0092 -0.5133 11 6 0.6041 7.6469 1.4436 12 6 1.6095 8.3590 -0.7084 13 1 2.5964 8.2036 -1.1185 14 6 0.9958 9.5872 -0.8348 15 7 1.6126 10.5697 -1.4545 16 14 -0.7114 9.8557 -0.1260 17 1 -0.5962 10.3354 1.2746 18 1 -1.4310 10.8692 -0.9387 19 1 -1.4645 8.5760 -0.1506 20 6 3.3242 3.6756 0.0007 21 6 4.0659 2.5124 0.0004 22 6 3.4323 1.2832 0.0001 23 6 4.2500 0.0173 0.0003 24 9 5.6109 0.3412 0.0002 25 9 3.9485 -0.7323 1.1424 26 9 3.9493 -0.7322 -1.1421 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 0.2128 2.3172 0.0097 31 1 -0.0313 8.5324 1.4435 32 1 0.0927 6.8324 1.9569 33 1 1.5385 7.8707 1.9582 34 1 1.1807 11.4337 -1.5438 35 1 3.8223 4.6340 0.0018 36 1 5.1447 2.5620 0.0012 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000850843689.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:05:08 Heat of formation + Delta-G solvation = -258.101749 kcal Electronic energy + Delta-G solvation = -26579.611952 eV Core-core repulsion = 22000.258508 eV Total energy + Delta-G solvation = -4579.353443 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.091 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -51.16081 -48.68664 -48.60949 -41.93997 -41.01698 -38.69525 -37.75219 -35.32601 -33.67593 -32.58782 -31.56352 -28.51068 -27.95473 -27.33947 -24.79363 -23.64524 -23.14430 -21.73175 -20.13573 -19.50720 -19.50366 -19.35827 -18.73569 -18.18022 -17.43491 -17.28389 -17.03867 -16.81384 -16.45014 -15.85677 -15.57366 -15.48895 -15.14654 -15.04809 -14.93163 -14.77992 -14.73619 -14.60684 -14.43292 -14.27788 -14.03412 -13.67648 -13.52308 -13.09633 -12.86773 -12.84065 -12.44711 -12.27298 -12.23289 -11.85695 -11.72597 -11.51388 -11.25653 -10.84571 -10.61911 -9.65746 -8.44454 -6.53776 -0.87361 0.04058 1.22014 1.25004 1.32233 1.41140 1.54641 1.63438 1.99659 2.19798 2.32200 2.63759 2.88482 2.93437 3.37700 3.46617 3.58755 3.72183 3.90242 4.10970 4.19609 4.26737 4.31945 4.38444 4.44343 4.47105 4.62513 4.70484 4.76644 4.86530 5.03489 5.16882 5.27651 5.31308 5.51003 5.94830 6.08548 6.50474 6.69721 7.10484 8.71249 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.024759 B = 0.003113 C = 0.002881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.612388 B = 8993.249075 C = 9717.953624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.315 6.315 3 C 0.168 3.832 4 C -0.151 4.151 5 C -0.059 4.059 6 C 0.495 3.505 7 O -0.532 6.532 8 O -0.339 6.339 9 C 0.193 3.807 10 H 0.035 0.965 11 C -0.166 4.166 12 C -0.540 4.540 13 H 0.051 0.949 14 C 0.032 3.968 15 N -0.929 5.929 16 Si 0.938 3.062 17 H -0.251 1.251 18 H -0.285 1.285 19 H -0.256 1.256 20 C -0.099 4.099 21 C -0.033 4.033 22 C -0.200 4.200 23 C 0.523 3.477 24 F -0.171 7.171 25 F -0.176 7.176 26 F -0.177 7.177 27 H 0.069 0.931 28 H 0.067 0.933 29 H 0.132 0.868 30 H 0.160 0.840 31 H 0.057 0.943 32 H 0.058 0.942 33 H 0.072 0.928 34 H 0.275 0.725 35 H 0.159 0.841 36 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.612 -22.828 5.313 23.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.228 6.228 3 C 0.121 3.879 4 C -0.170 4.170 5 C -0.060 4.060 6 C 0.340 3.660 7 O -0.424 6.424 8 O -0.255 6.255 9 C 0.139 3.861 10 H 0.052 0.948 11 C -0.223 4.223 12 C -0.577 4.577 13 H 0.069 0.931 14 C -0.168 4.168 15 N -0.567 5.567 16 Si 0.763 3.237 17 H -0.176 1.176 18 H -0.211 1.211 19 H -0.180 1.180 20 C -0.118 4.118 21 C -0.051 4.051 22 C -0.202 4.202 23 C 0.469 3.531 24 F -0.153 7.153 25 F -0.157 7.157 26 F -0.158 7.158 27 H 0.087 0.913 28 H 0.086 0.914 29 H 0.150 0.850 30 H 0.177 0.823 31 H 0.075 0.925 32 H 0.077 0.923 33 H 0.091 0.909 34 H 0.085 0.915 35 H 0.177 0.823 36 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 1.350 -22.842 5.253 23.478 hybrid contribution -0.910 0.661 -0.032 1.125 sum 0.440 -22.181 5.221 22.792 Atomic orbital electron populations 1.23532 0.75206 1.06562 1.02798 1.86145 1.24450 1.24669 1.87543 1.18332 0.90536 0.85261 0.93816 1.21322 1.01889 0.89496 1.04279 1.19184 0.94286 0.89677 1.02893 1.21606 0.86518 0.85419 0.72428 1.90752 1.16066 1.88459 1.47151 1.86549 1.42156 1.14667 1.82083 1.20728 0.90370 0.79965 0.95001 0.94776 1.22434 1.02166 1.00663 0.97004 1.20925 1.04413 0.95049 1.37361 0.93095 1.25531 1.01664 0.94813 0.94772 1.69952 1.40138 1.03733 1.42848 0.86014 0.79611 0.78878 0.79166 1.17588 1.21140 1.18028 1.21583 0.91548 1.00568 0.98055 1.21133 1.02487 0.88386 0.93056 1.19737 0.91350 0.94236 1.14883 1.17850 0.77651 0.83697 0.73913 1.93180 1.33359 1.92499 1.96238 1.93217 1.93000 1.78447 1.51033 1.93219 1.93028 1.78476 1.51070 0.91259 0.91442 0.85033 0.82251 0.92480 0.92272 0.90873 0.91514 0.82334 0.80094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.16 9.81 113.37 1.11 1.28 16 2 O -0.32 -6.30 9.37 -92.50 -0.87 -7.16 16 3 C 0.17 3.73 6.56 22.47 0.15 3.88 16 4 C -0.15 -3.71 8.58 22.64 0.19 -3.51 16 5 C -0.06 -1.71 5.87 -20.11 -0.12 -1.82 16 6 C 0.49 18.70 7.87 70.33 0.55 19.25 16 7 O -0.53 -22.09 15.60 19.96 0.31 -21.78 16 8 O -0.34 -14.64 9.11 -56.24 -0.51 -15.16 16 9 C 0.19 9.35 2.16 29.85 0.06 9.42 16 10 H 0.03 1.74 6.22 -2.39 -0.01 1.73 16 11 C -0.17 -6.96 9.03 71.98 0.65 -6.31 16 12 C -0.54 -30.53 9.48 25.60 0.24 -30.29 16 13 H 0.05 3.17 8.06 -2.91 -0.02 3.15 16 14 C 0.03 1.81 5.45 84.66 0.46 2.28 16 15 N -0.93 -55.47 13.96 21.45 0.30 -55.17 16 16 Si 0.94 42.67 24.37 68.60 1.67 44.34 16 17 H -0.25 -10.50 6.87 99.48 0.68 -9.82 16 18 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 19 H -0.26 -11.30 6.53 99.48 0.65 -10.65 16 20 C -0.10 -2.39 9.61 22.54 0.22 -2.18 16 21 C -0.03 -0.64 9.41 22.22 0.21 -0.43 16 22 C -0.20 -4.24 5.39 -19.71 -0.11 -4.35 16 23 C 0.52 10.77 2.98 71.24 0.21 10.99 16 24 F -0.17 -3.22 15.96 44.97 0.72 -2.50 16 25 F -0.18 -3.82 16.94 44.97 0.76 -3.06 16 26 F -0.18 -3.91 16.94 44.97 0.76 -3.15 16 27 H 0.07 0.82 7.65 -2.39 -0.02 0.80 16 28 H 0.07 0.83 7.67 -2.39 -0.02 0.82 16 29 H 0.13 1.01 8.14 -2.39 -0.02 1.00 16 30 H 0.16 3.64 5.88 -2.91 -0.02 3.62 16 31 H 0.06 2.40 3.27 -2.39 -0.01 2.39 16 32 H 0.06 2.21 8.14 -2.38 -0.02 2.19 16 33 H 0.07 2.93 8.14 -2.39 -0.02 2.91 16 34 H 0.28 15.20 8.31 -92.71 -0.77 14.43 16 35 H 0.16 3.79 7.61 -2.91 -0.02 3.77 16 36 H 0.18 2.45 7.14 -2.91 -0.02 2.43 16 Total: -1.00 -66.70 321.18 8.05 -58.64 By element: Atomic # 1 Polarization: 5.73 SS G_CDS: 1.07 Total: 6.79 kcal Atomic # 6 Polarization: -5.64 SS G_CDS: 3.84 Total: -1.80 kcal Atomic # 7 Polarization: -55.47 SS G_CDS: 0.30 Total: -55.17 kcal Atomic # 8 Polarization: -43.03 SS G_CDS: -1.07 Total: -44.10 kcal Atomic # 9 Polarization: -10.95 SS G_CDS: 2.24 Total: -8.71 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 1.67 Total: 44.34 kcal Total: -66.70 8.05 -58.64 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850843689.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -199.458 kcal (2) G-P(sol) polarization free energy of solvation -66.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -266.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -258.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds