Wall clock time and date at job start Tue Mar 31 2020 12:31:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35961 * 117.00007 * 2 1 4 4 C 1.38736 * 119.99834 * 0.02562 * 3 2 1 5 5 C 1.38090 * 119.99869 * 180.29773 * 4 3 2 6 6 C 1.38734 * 119.99952 * 359.44867 * 5 4 3 7 7 O 1.35985 * 119.99820 * 180.27459 * 6 5 4 8 8 C 1.34249 * 116.99957 * 69.28188 * 7 6 5 9 9 O 1.20827 * 119.99593 * 5.76931 * 8 7 6 10 10 C 1.50698 * 119.99685 * 185.76342 * 8 7 6 11 11 C 1.52999 * 109.46689 * 179.97438 * 10 8 7 12 12 C 1.50703 * 109.47215 * 180.02562 * 11 10 8 13 13 H 1.08001 * 119.99708 * 0.02562 * 12 11 10 14 14 C 1.37872 * 120.00327 * 180.02562 * 12 11 10 15 15 N 1.31517 * 119.99862 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 120.00199 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47147 * 89.99582 * 16 14 12 18 18 H 1.48500 * 109.47429 * 209.99743 * 16 14 12 19 19 H 1.48499 * 109.47248 * 329.99638 * 16 14 12 20 20 C 1.38692 * 119.99684 * 0.55203 * 6 5 4 21 21 C 1.38125 * 120.00429 * 359.72403 * 20 6 5 22 22 C 1.50699 * 120.00470 * 179.97438 * 21 20 6 23 23 F 1.39905 * 109.46826 * 0.02562 * 22 21 20 24 24 F 1.39896 * 109.47367 * 120.01689 * 22 21 20 25 25 F 1.39900 * 109.47408 * 240.02482 * 22 21 20 26 26 H 1.09003 * 109.46724 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47172 * 299.99632 * 1 2 3 28 28 H 1.08990 * 109.47340 * 59.99725 * 1 2 3 29 29 H 1.07998 * 120.00266 * 0.02562 * 4 3 2 30 30 H 1.08005 * 120.00078 * 179.70030 * 5 4 3 31 31 H 1.08999 * 109.47737 * 300.00250 * 10 8 7 32 32 H 1.09002 * 109.46802 * 60.00554 * 10 8 7 33 33 H 1.08997 * 109.47808 * 300.00334 * 11 10 8 34 34 H 1.09002 * 109.46901 * 60.00793 * 11 10 8 35 35 H 0.97002 * 119.99539 * 180.02562 * 15 14 12 36 36 H 1.08002 * 119.99414 * 179.74949 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2114 0.0000 4 6 1.2906 2.3749 0.0005 5 6 1.9175 3.6053 -0.0057 6 6 3.3029 3.6780 -0.0009 7 8 3.9202 4.8896 -0.0014 8 6 3.8159 5.6273 1.1155 9 8 3.2847 5.1649 2.0973 10 6 4.3612 7.0318 1.1444 11 6 4.1143 7.6463 2.5237 12 6 4.6591 9.0511 2.5526 13 1 5.1335 9.4644 1.6748 14 6 4.5518 9.8087 3.6995 15 7 3.9735 9.3055 4.7682 16 14 5.2264 11.5502 3.7351 17 1 4.1683 12.4998 3.3063 18 1 5.6618 11.8844 5.1149 19 1 6.3855 11.6511 2.8123 20 6 4.0583 2.5148 -0.0014 21 6 3.4313 1.2841 -0.0010 22 6 4.2520 0.0202 -0.0022 23 9 5.6122 0.3475 -0.0031 24 9 3.9539 -0.7306 1.1400 25 9 3.9521 -0.7297 -1.1445 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 0.2121 2.3184 0.0014 30 1 1.3293 4.5111 -0.0102 31 1 5.4321 7.0101 0.9423 32 1 3.8601 7.6318 0.3848 33 1 3.0434 7.6681 2.7254 34 1 4.6151 7.0464 3.2836 35 1 3.8977 9.8387 5.5750 36 1 5.1368 2.5714 -0.0018 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000870685106.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:31:06 Heat of formation + Delta-G solvation = -244.813672 kcal Electronic energy + Delta-G solvation = -26201.864713 eV Core-core repulsion = 21623.087484 eV Total energy + Delta-G solvation = -4578.777229 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.091 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -50.22400 -47.76216 -47.65782 -41.30127 -40.17721 -37.85087 -36.33192 -33.68399 -32.43511 -31.32355 -30.05481 -27.82485 -26.28826 -26.12673 -23.49130 -22.71426 -21.68599 -20.16366 -19.07732 -18.58983 -18.56731 -18.14281 -17.30527 -16.94105 -16.63717 -16.19674 -15.74966 -15.46951 -14.99740 -14.61842 -14.55770 -14.53335 -14.14316 -14.11452 -13.83957 -13.83598 -13.79209 -13.29947 -13.00374 -12.83642 -12.50479 -12.37830 -12.29769 -11.70086 -11.50166 -11.27662 -11.01443 -10.82483 -10.69721 -10.16645 -10.14376 -9.72036 -9.66102 -9.26117 -8.51906 -8.43761 -6.07482 -4.12952 0.56900 0.79494 2.46362 2.53435 2.67364 2.82486 3.28052 3.32870 3.35401 3.38233 3.59066 3.90438 4.31882 4.34651 4.39929 4.51114 4.73303 4.75423 4.77768 4.96804 5.08873 5.17091 5.28228 5.29380 5.60341 5.71492 5.92735 5.98174 6.00503 6.13233 6.58156 6.72205 6.82683 7.58291 7.63185 7.90257 8.12286 8.28813 8.93809 9.51705 11.03410 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.024087 B = 0.002642 C = 0.002522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.190471 B =10593.654157 C =11098.775736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.308 6.308 3 C 0.173 3.827 4 C -0.193 4.193 5 C -0.052 4.052 6 C 0.060 3.940 7 O -0.298 6.298 8 C 0.452 3.548 9 O -0.484 6.484 10 C -0.100 4.100 11 C 0.032 3.968 12 C -0.530 4.530 13 H 0.060 0.940 14 C 0.059 3.941 15 N -0.889 5.889 16 Si 0.897 3.103 17 H -0.280 1.280 18 H -0.286 1.286 19 H -0.273 1.273 20 C -0.038 4.038 21 C -0.208 4.208 22 C 0.522 3.478 23 F -0.177 7.177 24 F -0.172 7.172 25 F -0.174 7.174 26 H 0.105 0.895 27 H 0.062 0.938 28 H 0.061 0.939 29 H 0.147 0.853 30 H 0.142 0.858 31 H 0.097 0.903 32 H 0.097 0.903 33 H 0.026 0.974 34 H 0.027 0.973 35 H 0.263 0.737 36 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.681 -19.004 -13.073 23.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.220 6.220 3 C 0.126 3.874 4 C -0.211 4.211 5 C -0.071 4.071 6 C 0.018 3.982 7 O -0.215 6.215 8 C 0.296 3.704 9 O -0.367 6.367 10 C -0.138 4.138 11 C -0.005 4.005 12 C -0.568 4.568 13 H 0.078 0.922 14 C -0.143 4.143 15 N -0.527 5.527 16 Si 0.724 3.276 17 H -0.206 1.206 18 H -0.212 1.212 19 H -0.197 1.197 20 C -0.057 4.057 21 C -0.210 4.210 22 C 0.468 3.532 23 F -0.159 7.159 24 F -0.153 7.153 25 F -0.155 7.155 26 H 0.124 0.876 27 H 0.081 0.919 28 H 0.079 0.921 29 H 0.164 0.836 30 H 0.160 0.840 31 H 0.115 0.885 32 H 0.115 0.885 33 H 0.045 0.955 34 H 0.046 0.954 35 H 0.072 0.928 36 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -5.794 -19.365 -12.546 23.791 hybrid contribution 0.120 0.841 0.174 0.867 sum -5.675 -18.524 -12.372 22.987 Atomic orbital electron populations 1.23196 0.77203 1.04656 1.01946 1.86148 1.22440 1.25745 1.87693 1.18526 0.90391 0.85341 0.93132 1.21068 1.00699 0.90798 1.08556 1.21415 0.93607 0.98643 0.93397 1.18258 0.90659 0.84529 1.04744 1.84808 1.69004 1.26142 1.41553 1.25400 0.76584 0.88926 0.79464 1.90683 1.40016 1.71579 1.34436 1.21851 1.02074 0.84752 1.05076 1.19053 0.98489 0.95069 0.87857 1.21123 1.39043 0.98188 0.98477 0.92208 1.25020 0.95191 0.98543 0.95537 1.69991 1.43030 1.37090 1.02573 0.86526 0.79289 0.84407 0.77369 1.20583 1.21154 1.19740 1.20768 1.01508 0.88961 0.94440 1.19029 0.91225 0.93043 1.17696 1.17843 0.77494 0.83783 0.74096 1.93174 1.33922 1.92494 1.96275 1.93223 1.93009 1.78265 1.50838 1.93212 1.92992 1.78402 1.50913 0.87630 0.91938 0.92052 0.83563 0.84018 0.88460 0.88497 0.95533 0.95440 0.92775 0.82802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.81 101.05 0.99 1.14 16 2 O -0.31 -3.23 9.39 -19.62 -0.18 -3.42 16 3 C 0.17 2.02 6.57 -39.23 -0.26 1.77 16 4 C -0.19 -2.04 9.03 -39.45 -0.36 -2.40 16 5 C -0.05 -0.66 9.34 -39.45 -0.37 -1.03 16 6 C 0.06 0.87 5.26 -39.23 -0.21 0.66 16 7 O -0.30 -4.73 10.04 -23.77 -0.24 -4.96 16 8 C 0.45 8.41 7.73 36.00 0.28 8.69 16 9 O -0.48 -10.52 15.40 -18.75 -0.29 -10.80 16 10 C -0.10 -1.92 5.75 -27.88 -0.16 -2.08 16 11 C 0.03 0.82 4.26 -27.88 -0.12 0.70 16 12 C -0.53 -14.36 9.11 -34.44 -0.31 -14.67 16 13 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 14 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 15 N -0.89 -26.43 13.29 55.43 0.74 -25.69 16 16 Si 0.90 21.00 29.54 -169.99 -5.02 15.98 16 17 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 18 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 19 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 20 C -0.04 -0.51 9.36 -39.46 -0.37 -0.88 16 21 C -0.21 -2.65 5.38 -104.50 -0.56 -3.21 16 22 C 0.52 6.52 2.99 36.01 0.11 6.63 16 23 F -0.18 -2.17 15.97 2.25 0.04 -2.14 16 24 F -0.17 -2.27 16.95 2.25 0.04 -2.23 16 25 F -0.17 -2.14 16.95 2.25 0.04 -2.10 16 26 H 0.11 0.44 8.14 -51.93 -0.42 0.01 16 27 H 0.06 0.34 7.66 -51.93 -0.40 -0.06 16 28 H 0.06 0.29 7.66 -51.93 -0.40 -0.11 16 29 H 0.15 1.08 6.29 -52.49 -0.33 0.75 16 30 H 0.14 1.63 8.06 -52.48 -0.42 1.21 16 31 H 0.10 1.70 8.14 -51.93 -0.42 1.28 16 32 H 0.10 1.66 8.14 -51.93 -0.42 1.24 16 33 H 0.03 0.72 8.10 -51.93 -0.42 0.30 16 34 H 0.03 0.76 8.10 -51.93 -0.42 0.34 16 35 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 36 H 0.15 1.83 7.15 -52.49 -0.38 1.46 16 LS Contribution 332.40 15.07 5.01 5.01 Total: -1.00 -32.18 332.40 -4.88 -37.06 By element: Atomic # 1 Polarization: -0.01 SS G_CDS: -3.57 Total: -3.59 kcal Atomic # 6 Polarization: -1.68 SS G_CDS: -1.43 Total: -3.11 kcal Atomic # 7 Polarization: -26.43 SS G_CDS: 0.74 Total: -25.69 kcal Atomic # 8 Polarization: -18.47 SS G_CDS: -0.71 Total: -19.18 kcal Atomic # 9 Polarization: -6.58 SS G_CDS: 0.11 Total: -6.47 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -32.18 -4.88 -37.06 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870685106.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -207.755 kcal (2) G-P(sol) polarization free energy of solvation -32.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -239.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -244.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds