Wall clock time and date at job start Tue Mar 31 2020 12:31:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35961 * 117.00007 * 2 1 4 4 C 1.38736 * 119.99834 * 0.02562 * 3 2 1 5 5 C 1.38090 * 119.99869 * 180.29773 * 4 3 2 6 6 C 1.38734 * 119.99952 * 359.44867 * 5 4 3 7 7 O 1.35985 * 119.99820 * 180.27459 * 6 5 4 8 8 C 1.34249 * 116.99957 * 69.28188 * 7 6 5 9 9 O 1.20827 * 119.99593 * 5.76931 * 8 7 6 10 10 C 1.50698 * 119.99685 * 185.76342 * 8 7 6 11 11 C 1.52999 * 109.46689 * 179.97438 * 10 8 7 12 12 C 1.50703 * 109.47215 * 180.02562 * 11 10 8 13 13 H 1.08001 * 119.99708 * 0.02562 * 12 11 10 14 14 C 1.37872 * 120.00327 * 180.02562 * 12 11 10 15 15 N 1.31517 * 119.99862 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 120.00199 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47147 * 89.99582 * 16 14 12 18 18 H 1.48500 * 109.47429 * 209.99743 * 16 14 12 19 19 H 1.48499 * 109.47248 * 329.99638 * 16 14 12 20 20 C 1.38692 * 119.99684 * 0.55203 * 6 5 4 21 21 C 1.38125 * 120.00429 * 359.72403 * 20 6 5 22 22 C 1.50699 * 120.00470 * 179.97438 * 21 20 6 23 23 F 1.39905 * 109.46826 * 0.02562 * 22 21 20 24 24 F 1.39896 * 109.47367 * 120.01689 * 22 21 20 25 25 F 1.39900 * 109.47408 * 240.02482 * 22 21 20 26 26 H 1.09003 * 109.46724 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47172 * 299.99632 * 1 2 3 28 28 H 1.08990 * 109.47340 * 59.99725 * 1 2 3 29 29 H 1.07998 * 120.00266 * 0.02562 * 4 3 2 30 30 H 1.08005 * 120.00078 * 179.70030 * 5 4 3 31 31 H 1.08999 * 109.47737 * 300.00250 * 10 8 7 32 32 H 1.09002 * 109.46802 * 60.00554 * 10 8 7 33 33 H 1.08997 * 109.47808 * 300.00334 * 11 10 8 34 34 H 1.09002 * 109.46901 * 60.00793 * 11 10 8 35 35 H 0.97002 * 119.99539 * 180.02562 * 15 14 12 36 36 H 1.08002 * 119.99414 * 179.74949 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2114 0.0000 4 6 1.2906 2.3749 0.0005 5 6 1.9175 3.6053 -0.0057 6 6 3.3029 3.6780 -0.0009 7 8 3.9202 4.8896 -0.0014 8 6 3.8159 5.6273 1.1155 9 8 3.2847 5.1649 2.0973 10 6 4.3612 7.0318 1.1444 11 6 4.1143 7.6463 2.5237 12 6 4.6591 9.0511 2.5526 13 1 5.1335 9.4644 1.6748 14 6 4.5518 9.8087 3.6995 15 7 3.9735 9.3055 4.7682 16 14 5.2264 11.5502 3.7351 17 1 4.1683 12.4998 3.3063 18 1 5.6618 11.8844 5.1149 19 1 6.3855 11.6511 2.8123 20 6 4.0583 2.5148 -0.0014 21 6 3.4313 1.2841 -0.0010 22 6 4.2520 0.0202 -0.0022 23 9 5.6122 0.3475 -0.0031 24 9 3.9539 -0.7306 1.1400 25 9 3.9521 -0.7297 -1.1445 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 0.2121 2.3184 0.0014 30 1 1.3293 4.5111 -0.0102 31 1 5.4321 7.0101 0.9423 32 1 3.8601 7.6318 0.3848 33 1 3.0434 7.6681 2.7254 34 1 4.6151 7.0464 3.2836 35 1 3.8977 9.8387 5.5750 36 1 5.1368 2.5714 -0.0018 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000870685106.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:31:06 Heat of formation + Delta-G solvation = -262.632333 kcal Electronic energy + Delta-G solvation = -26202.637388 eV Core-core repulsion = 21623.087484 eV Total energy + Delta-G solvation = -4579.549904 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.091 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -51.21814 -48.75285 -48.66046 -42.50566 -41.16850 -38.98862 -37.53819 -35.66090 -33.41774 -33.14589 -31.07828 -28.56609 -27.94866 -27.17075 -25.01686 -23.62466 -23.09784 -21.63087 -20.09655 -19.58517 -19.56435 -19.27696 -18.78152 -18.06683 -17.99713 -17.41376 -16.86685 -16.67734 -16.48335 -15.86855 -15.60265 -15.54739 -15.18424 -15.12223 -15.11264 -14.84114 -14.80574 -14.56361 -14.30782 -14.11084 -13.87444 -13.52959 -13.25018 -13.23563 -12.83511 -12.64788 -12.51388 -12.19722 -12.00404 -11.88274 -11.77910 -11.53617 -11.29712 -10.60390 -10.56979 -9.49072 -8.19553 -6.32963 -0.39495 -0.19593 1.08151 1.41957 1.46119 1.46593 1.57559 1.64727 1.99566 2.27691 2.44271 2.60814 2.92179 3.14832 3.33327 3.46962 3.65528 3.70562 3.91937 4.09861 4.28299 4.35620 4.37069 4.38707 4.44620 4.58567 4.70459 4.82122 4.89009 4.97926 5.08837 5.42802 5.50380 5.55209 5.81034 5.99762 6.13321 6.76238 6.86254 7.37487 8.92873 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.024087 B = 0.002642 C = 0.002522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.190471 B =10593.654157 C =11098.775736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.320 6.320 3 C 0.178 3.822 4 C -0.184 4.184 5 C -0.056 4.056 6 C 0.023 3.977 7 O -0.285 6.285 8 C 0.462 3.538 9 O -0.523 6.523 10 C -0.091 4.091 11 C 0.038 3.962 12 C -0.543 4.543 13 H 0.079 0.921 14 C -0.003 4.003 15 N -0.935 5.935 16 Si 0.972 3.028 17 H -0.272 1.272 18 H -0.288 1.288 19 H -0.256 1.256 20 C -0.040 4.040 21 C -0.223 4.223 22 C 0.525 3.475 23 F -0.177 7.177 24 F -0.177 7.177 25 F -0.173 7.173 26 H 0.126 0.874 27 H 0.071 0.929 28 H 0.079 0.921 29 H 0.182 0.818 30 H 0.150 0.850 31 H 0.120 0.880 32 H 0.124 0.876 33 H -0.007 1.007 34 H -0.010 1.010 35 H 0.263 0.737 36 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.098 -18.885 -14.743 24.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.233 6.233 3 C 0.130 3.870 4 C -0.202 4.202 5 C -0.074 4.074 6 C -0.018 4.018 7 O -0.201 6.201 8 C 0.308 3.692 9 O -0.410 6.410 10 C -0.128 4.128 11 C 0.000 4.000 12 C -0.581 4.581 13 H 0.097 0.903 14 C -0.201 4.201 15 N -0.575 5.575 16 Si 0.796 3.204 17 H -0.197 1.197 18 H -0.214 1.214 19 H -0.180 1.180 20 C -0.058 4.058 21 C -0.225 4.225 22 C 0.471 3.529 23 F -0.159 7.159 24 F -0.159 7.159 25 F -0.154 7.154 26 H 0.144 0.856 27 H 0.090 0.910 28 H 0.098 0.902 29 H 0.199 0.801 30 H 0.168 0.832 31 H 0.138 0.862 32 H 0.142 0.858 33 H 0.012 0.988 34 H 0.008 0.992 35 H 0.072 0.928 36 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -6.207 -19.264 -14.265 24.761 hybrid contribution 0.150 0.617 0.651 0.909 sum -6.057 -18.647 -13.614 23.869 Atomic orbital electron populations 1.23587 0.74782 1.06574 1.03278 1.86155 1.24945 1.25095 1.87107 1.18691 0.90246 0.86275 0.91751 1.21393 1.02347 0.89494 1.06962 1.21620 0.93008 0.99916 0.92895 1.18536 0.91708 0.83945 1.07643 1.84761 1.68825 1.26820 1.39699 1.25122 0.75603 0.88914 0.79569 1.90669 1.41839 1.72452 1.35993 1.21589 1.03899 0.85428 1.01875 1.18822 0.95756 0.94802 0.90585 1.21636 1.38487 0.98868 0.99061 0.90310 1.26067 0.95481 1.03416 0.95156 1.70155 1.44831 1.39089 1.03430 0.85341 0.79071 0.78552 0.77425 1.19699 1.21370 1.17994 1.20824 1.01915 0.88921 0.94164 1.19123 0.92049 0.92755 1.18583 1.17809 0.77473 0.83723 0.73932 1.93170 1.33959 1.92487 1.96266 1.93209 1.93060 1.78414 1.51175 1.93209 1.92988 1.78390 1.50800 0.85627 0.91030 0.90198 0.80076 0.83217 0.86215 0.85807 0.98819 0.99168 0.92791 0.82241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.10 9.81 113.37 1.11 1.22 16 2 O -0.32 -6.06 9.39 -93.11 -0.87 -6.94 16 3 C 0.18 3.88 6.57 22.50 0.15 4.02 16 4 C -0.18 -3.51 9.03 22.35 0.20 -3.31 16 5 C -0.06 -1.35 9.34 22.35 0.21 -1.14 16 6 C 0.02 0.66 5.26 22.50 0.12 0.78 16 7 O -0.29 -8.88 10.04 4.00 0.04 -8.84 16 8 C 0.46 17.21 7.73 71.24 0.55 17.76 16 9 O -0.52 -23.35 15.40 21.96 0.34 -23.01 16 10 C -0.09 -3.42 5.75 29.85 0.17 -3.25 16 11 C 0.04 1.95 4.26 29.85 0.13 2.08 16 12 C -0.54 -29.33 9.11 25.60 0.23 -29.10 16 13 H 0.08 3.87 7.74 -2.91 -0.02 3.84 16 14 C 0.00 -0.18 5.46 84.65 0.46 0.28 16 15 N -0.94 -57.06 13.29 21.45 0.28 -56.78 16 16 Si 0.97 42.81 29.54 68.60 2.03 44.84 16 17 H -0.27 -11.52 7.11 99.48 0.71 -10.82 16 18 H -0.29 -12.66 7.11 99.48 0.71 -11.96 16 19 H -0.26 -10.51 7.11 99.48 0.71 -9.81 16 20 C -0.04 -1.04 9.36 22.35 0.21 -0.83 16 21 C -0.22 -5.51 5.38 -19.78 -0.11 -5.62 16 22 C 0.52 12.79 2.99 71.24 0.21 13.00 16 23 F -0.18 -4.28 15.97 44.97 0.72 -3.56 16 24 F -0.18 -4.58 16.95 44.97 0.76 -3.82 16 25 F -0.17 -4.09 16.95 44.97 0.76 -3.33 16 26 H 0.13 0.66 8.14 -2.39 -0.02 0.64 16 27 H 0.07 0.55 7.66 -2.39 -0.02 0.54 16 28 H 0.08 0.46 7.66 -2.39 -0.02 0.44 16 29 H 0.18 2.06 6.29 -2.91 -0.02 2.04 16 30 H 0.15 3.28 8.06 -2.91 -0.02 3.26 16 31 H 0.12 3.98 8.14 -2.39 -0.02 3.97 16 32 H 0.12 4.01 8.14 -2.39 -0.02 3.99 16 33 H -0.01 -0.38 8.10 -2.39 -0.02 -0.40 16 34 H -0.01 -0.59 8.10 -2.39 -0.02 -0.61 16 35 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 36 H 0.16 3.80 7.15 -2.91 -0.02 3.78 16 Total: -1.00 -71.16 332.40 8.84 -62.32 By element: Atomic # 1 Polarization: 2.10 SS G_CDS: 1.13 Total: 3.23 kcal Atomic # 6 Polarization: -7.77 SS G_CDS: 3.65 Total: -4.12 kcal Atomic # 7 Polarization: -57.06 SS G_CDS: 0.28 Total: -56.78 kcal Atomic # 8 Polarization: -38.29 SS G_CDS: -0.50 Total: -38.79 kcal Atomic # 9 Polarization: -12.95 SS G_CDS: 2.24 Total: -10.71 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 2.03 Total: 44.84 kcal Total: -71.16 8.84 -62.32 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870685106.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -200.309 kcal (2) G-P(sol) polarization free energy of solvation -71.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -271.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -262.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds