Wall clock time and date at job start Tue Mar 31 2020 12:55:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86795 * 120.00247 * 2 1 4 4 H 1.48501 * 109.47081 * 274.95875 * 3 2 1 5 5 H 1.48498 * 109.47208 * 34.96017 * 3 2 1 6 6 H 1.48495 * 109.47072 * 154.96079 * 3 2 1 7 7 C 1.38808 * 119.99476 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00224 * 155.60088 * 7 2 1 9 9 N 1.36940 * 120.00430 * 335.60481 * 7 2 1 10 10 C 1.47082 * 120.94378 * 153.80608 * 9 7 2 11 11 C 1.53331 * 109.24709 * 116.43529 * 10 9 7 12 12 N 1.46226 * 109.17301 * 45.64826 * 11 10 9 13 13 C 1.34797 * 128.60121 * 161.73029 * 12 11 10 14 14 C 1.50703 * 126.43953 * 359.48712 * 13 12 11 15 15 C 1.50699 * 109.46826 * 264.27346 * 14 13 12 16 16 C 1.38239 * 120.00353 * 93.79940 * 15 14 13 17 17 C 1.38219 * 120.01186 * 179.97438 * 16 15 14 18 18 C 1.38267 * 120.02589 * 359.97438 * 17 16 15 19 19 C 1.38186 * 120.01315 * 0.02562 * 18 17 16 20 20 C 1.38322 * 120.00959 * 273.77162 * 15 14 13 21 21 Cl 1.73605 * 120.01315 * 0.02562 * 20 15 14 22 22 N 1.30823 * 107.11920 * 179.74586 * 13 12 11 23 23 N 1.28935 * 109.73670 * 359.68554 * 22 13 12 24 24 C 1.29727 * 109.42949 * 0.55110 * 23 22 13 25 25 C 1.47521 * 120.94364 * 333.78973 * 9 7 2 26 26 H 0.97009 * 119.99731 * 359.97438 * 1 2 3 27 27 H 1.08998 * 109.50994 * 356.49945 * 10 9 7 28 28 H 1.08998 * 109.50576 * 236.36610 * 10 9 7 29 29 H 1.09002 * 109.51664 * 285.74375 * 11 10 9 30 30 H 1.08994 * 109.57240 * 165.58406 * 11 10 9 31 31 H 1.09004 * 109.46876 * 144.27552 * 14 13 12 32 32 H 1.08998 * 109.47086 * 24.27533 * 14 13 12 33 33 H 1.07998 * 119.99472 * 359.95059 * 16 15 14 34 34 H 1.08000 * 119.98913 * 179.97438 * 17 16 15 35 35 H 1.07998 * 119.99368 * 179.72125 * 18 17 16 36 36 H 1.08008 * 120.00848 * 180.02562 * 19 18 17 37 37 H 1.08999 * 109.95384 * 342.52424 * 25 9 7 38 38 H 1.08995 * 109.96374 * 103.71930 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3930 2.1068 -1.3948 5 1 1.5041 2.6201 0.8022 6 1 3.5962 1.4120 0.5925 7 6 2.0101 -1.2022 -0.0005 8 1 3.0178 -1.2439 -0.3869 9 7 1.4171 -2.3354 0.4888 10 6 1.8269 -3.6671 0.0178 11 6 2.4241 -4.4559 1.1892 12 7 1.5616 -4.3035 2.3601 13 6 1.5114 -5.0635 3.4723 14 6 2.3496 -6.2819 3.7624 15 6 1.5827 -7.5217 3.3804 16 6 1.7524 -8.0808 2.1275 17 6 1.0495 -9.2182 1.7771 18 6 0.1768 -9.7977 2.6795 19 6 0.0064 -9.2397 3.9322 20 6 0.7094 -8.1007 4.2834 21 17 0.4959 -7.3991 5.8569 22 7 0.5944 -4.5480 4.2499 23 7 0.0792 -3.5092 3.6861 24 6 0.6341 -3.3269 2.5278 25 6 0.3493 -2.2551 1.5035 26 1 -0.4850 0.8401 0.0004 27 1 2.5744 -3.5611 -0.7684 28 1 0.9589 -4.1978 -0.3735 29 1 3.4187 -4.0723 1.4170 30 1 2.4927 -5.5104 0.9222 31 1 2.5869 -6.3148 4.8258 32 1 3.2730 -6.2335 3.1853 33 1 2.4339 -7.6286 1.4223 34 1 1.1820 -9.6545 0.7981 35 1 -0.3755 -10.6838 2.4036 36 1 -0.6751 -9.6926 4.6372 37 1 0.3606 -1.2742 1.9786 38 1 -0.6203 -2.4317 1.0381 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000886705966.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:55:58 Heat of formation + Delta-G solvation = 122.411170 kcal Electronic energy + Delta-G solvation = -24095.935168 eV Core-core repulsion = 20580.233410 eV Total energy + Delta-G solvation = -3515.701758 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.094 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.62036 -39.55423 -36.75664 -36.37502 -34.47547 -33.42480 -31.41148 -30.92738 -30.41177 -29.08277 -27.09069 -25.65243 -23.88301 -22.92705 -22.29433 -21.93593 -20.38781 -19.15833 -17.33935 -16.81212 -16.46003 -16.04759 -15.78035 -15.46578 -14.86036 -14.56099 -14.12185 -13.98814 -13.68152 -13.44084 -13.33207 -13.21398 -12.81353 -12.48449 -12.06326 -11.82170 -11.59200 -11.51795 -11.46222 -11.14345 -10.94587 -10.84038 -10.75317 -10.62679 -10.38215 -10.13980 -9.71032 -9.48935 -9.14090 -8.82903 -8.78439 -8.26493 -7.13037 -6.06680 -3.47037 0.95800 1.03618 2.15357 2.42392 3.04063 3.27422 3.37409 3.39245 3.41234 3.51885 4.28659 4.48856 4.52309 4.66757 4.74273 4.82884 4.94579 5.04938 5.12606 5.17832 5.22013 5.30228 5.40158 5.48136 5.55987 5.61216 5.69991 6.00830 6.02863 6.14580 6.18407 6.24418 6.35855 6.52500 6.57223 6.78179 6.81160 7.11226 7.49650 7.59863 8.06184 8.84468 9.38152 9.51971 10.04806 11.03873 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.023815 B = 0.003583 C = 0.003331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.446375 B = 7812.275088 C = 8403.083530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.016 3.984 3 Si 0.901 3.099 4 H -0.285 1.285 5 H -0.286 1.286 6 H -0.277 1.277 7 C -0.277 4.277 8 H 0.073 0.927 9 N -0.590 5.590 10 C 0.131 3.869 11 C 0.084 3.916 12 N -0.457 5.457 13 C 0.151 3.849 14 C 0.011 3.989 15 C -0.072 4.072 16 C -0.102 4.102 17 C -0.117 4.117 18 C -0.110 4.110 19 C -0.113 4.113 20 C -0.019 4.019 21 Cl -0.048 7.048 22 N -0.286 5.286 23 N -0.311 5.311 24 C 0.189 3.811 25 C 0.255 3.745 26 H 0.261 0.739 27 H 0.085 0.915 28 H 0.037 0.963 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.107 0.893 32 H 0.090 0.910 33 H 0.129 0.871 34 H 0.129 0.871 35 H 0.130 0.870 36 H 0.133 0.867 37 H 0.102 0.898 38 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.619 -19.312 3.551 20.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.185 4.185 3 Si 0.730 3.270 4 H -0.212 1.212 5 H -0.211 1.211 6 H -0.202 1.202 7 C -0.405 4.405 8 H 0.091 0.909 9 N -0.312 5.312 10 C 0.003 3.997 11 C -0.042 4.042 12 N -0.148 5.148 13 C -0.116 4.116 14 C -0.029 4.029 15 C -0.074 4.074 16 C -0.120 4.120 17 C -0.135 4.135 18 C -0.128 4.128 19 C -0.132 4.132 20 C -0.046 4.046 21 Cl -0.019 7.019 22 N -0.127 5.127 23 N -0.151 5.151 24 C -0.080 4.080 25 C 0.127 3.873 26 H 0.070 0.930 27 H 0.103 0.897 28 H 0.055 0.945 29 H 0.100 0.900 30 H 0.097 0.903 31 H 0.125 0.875 32 H 0.109 0.891 33 H 0.147 0.853 34 H 0.146 0.854 35 H 0.148 0.852 36 H 0.151 0.849 37 H 0.120 0.880 38 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 3.587 -18.858 4.851 19.799 hybrid contribution 1.195 0.688 -1.011 1.710 sum 4.782 -18.170 3.840 19.177 Atomic orbital electron populations 1.70082 1.05504 1.26590 1.50736 1.25036 0.95129 0.98891 0.99441 0.86325 0.79572 0.83359 0.77792 1.21152 1.21146 1.20208 1.19023 0.96014 0.85526 1.39919 0.90937 1.44170 1.43099 1.00837 1.43143 1.21207 0.98588 0.87399 0.92519 1.22747 0.94258 1.01371 0.85812 1.45829 1.30357 1.22579 1.16003 1.23994 1.02388 0.98162 0.87057 1.18818 0.94725 0.85015 1.04297 1.19557 0.97754 0.96234 0.93869 1.21039 1.00001 0.96061 0.94899 1.21204 0.96579 0.95933 0.99792 1.21119 0.98450 1.00135 0.93088 1.21075 0.99617 0.94979 0.97522 1.20887 0.99140 0.95838 0.88769 1.98405 1.95999 1.83563 1.23952 1.74400 1.08172 1.05345 1.24787 1.74037 1.23877 1.11833 1.05369 1.26444 0.89894 0.94255 0.97397 1.19536 0.91849 0.92319 0.83640 0.92956 0.89690 0.94545 0.89997 0.90323 0.87458 0.89135 0.85280 0.85351 0.85210 0.84937 0.88037 0.91707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.43 11.82 55.49 0.66 -23.77 16 2 C 0.02 0.43 4.75 -17.43 -0.08 0.35 16 3 Si 0.90 20.59 29.62 -169.99 -5.03 15.56 16 4 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 6 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 7 C -0.28 -7.02 9.56 -15.06 -0.14 -7.17 16 8 H 0.07 1.78 7.94 -52.48 -0.42 1.36 16 9 N -0.59 -13.71 2.99 -172.95 -0.52 -14.22 16 10 C 0.13 2.36 6.50 -3.55 -0.02 2.34 16 11 C 0.08 1.27 6.78 -4.02 -0.03 1.24 16 12 N -0.46 -8.50 3.11 -110.82 -0.34 -8.85 16 13 C 0.15 2.68 7.30 -155.37 -1.13 1.54 16 14 C 0.01 0.14 5.32 -29.03 -0.15 -0.01 16 15 C -0.07 -0.89 5.12 -104.59 -0.54 -1.42 16 16 C -0.10 -1.05 9.69 -39.59 -0.38 -1.44 16 17 C -0.12 -1.06 10.05 -39.58 -0.40 -1.46 16 18 C -0.11 -0.99 10.05 -39.59 -0.40 -1.39 16 19 C -0.11 -1.20 9.83 -39.55 -0.39 -1.58 16 20 C -0.02 -0.24 6.31 -39.50 -0.25 -0.49 16 21 Cl -0.05 -0.65 27.24 -51.86 -1.41 -2.06 16 22 N -0.29 -6.00 12.10 32.71 0.40 -5.61 16 23 N -0.31 -7.21 12.21 32.78 0.40 -6.81 16 24 C 0.19 4.19 7.88 -155.31 -1.22 2.96 16 25 C 0.25 6.05 5.44 -4.50 -0.02 6.03 16 26 H 0.26 6.93 8.31 -40.82 -0.34 6.60 16 27 H 0.08 1.40 7.94 -51.93 -0.41 0.99 16 28 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 30 H 0.08 0.91 7.30 -51.93 -0.38 0.53 16 31 H 0.11 1.36 7.07 -51.93 -0.37 0.99 16 32 H 0.09 0.94 7.81 -51.93 -0.41 0.53 16 33 H 0.13 1.09 7.22 -52.49 -0.38 0.71 16 34 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 35 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 36 H 0.13 1.17 8.06 -52.48 -0.42 0.75 16 37 H 0.10 2.66 6.88 -51.93 -0.36 2.30 16 38 H 0.07 1.62 8.14 -51.93 -0.42 1.20 16 LS Contribution 334.05 15.07 5.03 5.03 Total: -1.00 -31.23 334.05 -10.38 -41.61 By element: Atomic # 1 Polarization: 4.01 SS G_CDS: -4.39 Total: -0.38 kcal Atomic # 6 Polarization: 4.66 SS G_CDS: -5.17 Total: -0.50 kcal Atomic # 7 Polarization: -59.85 SS G_CDS: 0.59 Total: -59.26 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.03 Total: 15.56 kcal Atomic # 17 Polarization: -0.65 SS G_CDS: -1.41 Total: -2.06 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -31.23 -10.38 -41.61 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886705966.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.018 kcal (2) G-P(sol) polarization free energy of solvation -31.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 132.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.607 kcal (6) G-S(sol) free energy of system = (1) + (5) 122.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds