Wall clock time and date at job start Tue Mar 31 2020 12:55:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86795 * 120.00247 * 2 1 4 4 H 1.48501 * 109.47081 * 274.95875 * 3 2 1 5 5 H 1.48498 * 109.47208 * 34.96017 * 3 2 1 6 6 H 1.48495 * 109.47072 * 154.96079 * 3 2 1 7 7 C 1.38808 * 119.99476 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00224 * 155.60088 * 7 2 1 9 9 N 1.36940 * 120.00430 * 335.60481 * 7 2 1 10 10 C 1.47082 * 120.94378 * 153.80608 * 9 7 2 11 11 C 1.53331 * 109.24709 * 116.43529 * 10 9 7 12 12 N 1.46226 * 109.17301 * 45.64826 * 11 10 9 13 13 C 1.34797 * 128.60121 * 161.73029 * 12 11 10 14 14 C 1.50703 * 126.43953 * 359.48712 * 13 12 11 15 15 C 1.50699 * 109.46826 * 264.27346 * 14 13 12 16 16 C 1.38239 * 120.00353 * 93.79940 * 15 14 13 17 17 C 1.38219 * 120.01186 * 179.97438 * 16 15 14 18 18 C 1.38267 * 120.02589 * 359.97438 * 17 16 15 19 19 C 1.38186 * 120.01315 * 0.02562 * 18 17 16 20 20 C 1.38322 * 120.00959 * 273.77162 * 15 14 13 21 21 Cl 1.73605 * 120.01315 * 0.02562 * 20 15 14 22 22 N 1.30823 * 107.11920 * 179.74586 * 13 12 11 23 23 N 1.28935 * 109.73670 * 359.68554 * 22 13 12 24 24 C 1.29727 * 109.42949 * 0.55110 * 23 22 13 25 25 C 1.47521 * 120.94364 * 333.78973 * 9 7 2 26 26 H 0.97009 * 119.99731 * 359.97438 * 1 2 3 27 27 H 1.08998 * 109.50994 * 356.49945 * 10 9 7 28 28 H 1.08998 * 109.50576 * 236.36610 * 10 9 7 29 29 H 1.09002 * 109.51664 * 285.74375 * 11 10 9 30 30 H 1.08994 * 109.57240 * 165.58406 * 11 10 9 31 31 H 1.09004 * 109.46876 * 144.27552 * 14 13 12 32 32 H 1.08998 * 109.47086 * 24.27533 * 14 13 12 33 33 H 1.07998 * 119.99472 * 359.95059 * 16 15 14 34 34 H 1.08000 * 119.98913 * 179.97438 * 17 16 15 35 35 H 1.07998 * 119.99368 * 179.72125 * 18 17 16 36 36 H 1.08008 * 120.00848 * 180.02562 * 19 18 17 37 37 H 1.08999 * 109.95384 * 342.52424 * 25 9 7 38 38 H 1.08995 * 109.96374 * 103.71930 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3930 2.1068 -1.3948 5 1 1.5041 2.6201 0.8022 6 1 3.5962 1.4120 0.5925 7 6 2.0101 -1.2022 -0.0005 8 1 3.0178 -1.2439 -0.3869 9 7 1.4171 -2.3354 0.4888 10 6 1.8269 -3.6671 0.0178 11 6 2.4241 -4.4559 1.1892 12 7 1.5616 -4.3035 2.3601 13 6 1.5114 -5.0635 3.4723 14 6 2.3496 -6.2819 3.7624 15 6 1.5827 -7.5217 3.3804 16 6 1.7524 -8.0808 2.1275 17 6 1.0495 -9.2182 1.7771 18 6 0.1768 -9.7977 2.6795 19 6 0.0064 -9.2397 3.9322 20 6 0.7094 -8.1007 4.2834 21 17 0.4959 -7.3991 5.8569 22 7 0.5944 -4.5480 4.2499 23 7 0.0792 -3.5092 3.6861 24 6 0.6341 -3.3269 2.5278 25 6 0.3493 -2.2551 1.5035 26 1 -0.4850 0.8401 0.0004 27 1 2.5744 -3.5611 -0.7684 28 1 0.9589 -4.1978 -0.3735 29 1 3.4187 -4.0723 1.4170 30 1 2.4927 -5.5104 0.9222 31 1 2.5869 -6.3148 4.8258 32 1 3.2730 -6.2335 3.1853 33 1 2.4339 -7.6286 1.4223 34 1 1.1820 -9.6545 0.7981 35 1 -0.3755 -10.6838 2.4036 36 1 -0.6751 -9.6926 4.6372 37 1 0.3606 -1.2742 1.9786 38 1 -0.6203 -2.4317 1.0381 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000886705966.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:55:56 Heat of formation + Delta-G solvation = 106.131678 kcal Electronic energy + Delta-G solvation = -24096.641100 eV Core-core repulsion = 20580.233410 eV Total energy + Delta-G solvation = -3516.407689 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.094 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -44.15719 -40.33955 -38.39702 -37.29432 -35.89513 -34.74133 -33.11245 -31.94420 -31.64707 -30.48443 -28.43080 -27.26995 -25.48011 -23.88280 -23.62757 -23.08933 -21.64763 -20.76733 -18.67015 -18.20026 -17.90211 -17.37732 -16.78272 -16.48747 -16.27911 -15.86147 -15.68512 -15.43225 -14.89411 -14.80533 -14.50082 -14.36271 -13.94090 -13.65314 -13.47850 -13.32076 -12.88576 -12.73156 -12.57248 -12.52324 -12.39507 -12.24869 -12.21191 -12.18973 -11.96247 -11.66752 -11.26993 -10.90515 -10.70438 -9.99128 -9.85073 -9.60713 -9.00966 -8.02802 -5.44393 0.15284 0.28266 0.93210 1.28126 1.45321 1.50974 1.58286 1.64986 1.89399 2.43968 2.64896 3.06943 3.33178 3.44242 3.66370 3.66509 3.67949 3.75980 4.04866 4.18618 4.21281 4.23230 4.41131 4.48226 4.54233 4.64518 4.75097 4.79683 4.81086 4.97114 4.99042 5.02616 5.18825 5.27812 5.29820 5.40141 5.47373 5.61362 5.87385 6.06635 6.18439 6.91037 7.61599 7.82357 8.15627 9.07189 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.023815 B = 0.003583 C = 0.003331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.446375 B = 7812.275088 C = 8403.083530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C -0.037 4.037 3 Si 0.961 3.039 4 H -0.280 1.280 5 H -0.297 1.297 6 H -0.269 1.269 7 C -0.276 4.276 8 H 0.085 0.915 9 N -0.606 5.606 10 C 0.126 3.874 11 C 0.086 3.914 12 N -0.454 5.454 13 C 0.178 3.822 14 C 0.013 3.987 15 C -0.092 4.092 16 C -0.104 4.104 17 C -0.116 4.116 18 C -0.106 4.106 19 C -0.125 4.125 20 C -0.041 4.041 21 Cl -0.071 7.071 22 N -0.320 5.320 23 N -0.343 5.343 24 C 0.169 3.831 25 C 0.272 3.728 26 H 0.255 0.745 27 H 0.106 0.894 28 H 0.036 0.964 29 H 0.098 0.902 30 H 0.130 0.870 31 H 0.107 0.893 32 H 0.126 0.874 33 H 0.154 0.846 34 H 0.159 0.841 35 H 0.158 0.842 36 H 0.142 0.858 37 H 0.065 0.935 38 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.988 -22.069 2.125 23.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.234 4.234 3 Si 0.788 3.212 4 H -0.206 1.206 5 H -0.224 1.224 6 H -0.194 1.194 7 C -0.405 4.405 8 H 0.102 0.898 9 N -0.330 5.330 10 C 0.000 4.000 11 C -0.038 4.038 12 N -0.144 5.144 13 C -0.090 4.090 14 C -0.026 4.026 15 C -0.094 4.094 16 C -0.122 4.122 17 C -0.134 4.134 18 C -0.124 4.124 19 C -0.144 4.144 20 C -0.068 4.068 21 Cl -0.042 7.042 22 N -0.160 5.160 23 N -0.183 5.183 24 C -0.102 4.102 25 C 0.144 3.856 26 H 0.064 0.936 27 H 0.124 0.876 28 H 0.054 0.946 29 H 0.116 0.884 30 H 0.147 0.853 31 H 0.125 0.875 32 H 0.144 0.856 33 H 0.172 0.828 34 H 0.176 0.824 35 H 0.176 0.824 36 H 0.159 0.841 37 H 0.083 0.917 38 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 5.993 -21.653 3.412 22.725 hybrid contribution 0.476 1.344 -0.599 1.547 sum 6.469 -20.309 2.813 21.499 Atomic orbital electron populations 1.70204 1.06931 1.26668 1.53025 1.25762 0.95704 1.01776 1.00181 0.85386 0.78420 0.79759 0.77606 1.20621 1.22399 1.19374 1.19421 0.96397 0.86410 1.38305 0.89762 1.44351 1.42777 1.02536 1.43303 1.21451 0.99217 0.85013 0.94331 1.22928 0.93615 1.03943 0.83286 1.45995 1.29786 1.21485 1.17111 1.24838 1.00669 0.98001 0.85527 1.19055 0.95268 0.83182 1.05116 1.19577 0.98518 0.96346 0.94956 1.21378 1.00246 0.96333 0.94239 1.21626 0.95522 0.95297 1.00942 1.21525 0.98072 1.00630 0.92181 1.21325 0.99714 0.94670 0.98682 1.21151 1.00462 0.96948 0.88248 1.98394 1.96185 1.84017 1.25597 1.74344 1.10085 1.05578 1.26001 1.73945 1.25055 1.13125 1.06139 1.25878 0.91898 0.95258 0.97137 1.18916 0.91326 0.91257 0.84132 0.93636 0.87594 0.94586 0.88424 0.85263 0.87495 0.85594 0.82804 0.82363 0.82422 0.84052 0.91656 0.94359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.78 11.82 21.65 0.26 -52.52 16 2 C -0.04 -1.94 4.75 84.86 0.40 -1.54 16 3 Si 0.96 42.85 29.62 68.60 2.03 44.88 16 4 H -0.28 -12.13 7.11 99.48 0.71 -11.43 16 5 H -0.30 -13.69 7.11 99.48 0.71 -12.99 16 6 H -0.27 -11.50 7.11 99.48 0.71 -10.80 16 7 C -0.28 -13.92 9.56 84.03 0.80 -13.12 16 8 H 0.08 3.97 7.94 -2.91 -0.02 3.95 16 9 N -0.61 -28.03 2.99 -701.09 -2.10 -30.12 16 10 C 0.13 4.22 6.50 86.38 0.56 4.78 16 11 C 0.09 2.25 6.78 86.54 0.59 2.84 16 12 N -0.45 -16.01 3.11 -504.51 -1.57 -17.58 16 13 C 0.18 6.00 7.30 138.11 1.01 7.00 16 14 C 0.01 0.30 5.32 29.10 0.15 0.45 16 15 C -0.09 -1.99 5.12 -19.84 -0.10 -2.09 16 16 C -0.10 -1.67 9.69 22.27 0.22 -1.46 16 17 C -0.12 -1.57 10.05 22.27 0.22 -1.35 16 18 C -0.11 -1.53 10.05 22.26 0.22 -1.31 16 19 C -0.13 -2.39 9.83 22.29 0.22 -2.17 16 20 C -0.04 -0.98 6.31 22.32 0.14 -0.84 16 21 Cl -0.07 -1.90 27.24 -2.72 -0.07 -1.98 16 22 N -0.32 -13.48 12.10 -50.41 -0.61 -14.09 16 23 N -0.34 -16.32 12.21 -50.19 -0.61 -16.94 16 24 C 0.17 7.59 7.88 138.22 1.09 8.68 16 25 C 0.27 13.48 5.44 85.52 0.47 13.95 16 26 H 0.25 14.16 8.31 -92.70 -0.77 13.39 16 27 H 0.11 3.10 7.94 -2.39 -0.02 3.08 16 28 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 29 H 0.10 2.36 8.14 -2.39 -0.02 2.34 16 30 H 0.13 2.15 7.30 -2.39 -0.02 2.13 16 31 H 0.11 2.50 7.07 -2.38 -0.02 2.48 16 32 H 0.13 1.97 7.81 -2.39 -0.02 1.95 16 33 H 0.15 1.62 7.22 -2.91 -0.02 1.60 16 34 H 0.16 1.19 8.06 -2.91 -0.02 1.17 16 35 H 0.16 1.34 8.06 -2.91 -0.02 1.31 16 36 H 0.14 2.30 8.06 -2.91 -0.02 2.28 16 37 H 0.07 3.65 6.88 -2.39 -0.02 3.63 16 38 H 0.04 2.05 8.14 -2.39 -0.02 2.03 16 Total: -1.00 -71.56 334.05 4.40 -67.16 By element: Atomic # 1 Polarization: 6.27 SS G_CDS: 1.09 Total: 7.36 kcal Atomic # 6 Polarization: 7.84 SS G_CDS: 5.99 Total: 13.83 kcal Atomic # 7 Polarization: -126.61 SS G_CDS: -4.64 Total: -131.25 kcal Atomic # 14 Polarization: 42.85 SS G_CDS: 2.03 Total: 44.88 kcal Atomic # 17 Polarization: -1.90 SS G_CDS: -0.07 Total: -1.98 kcal Total: -71.56 4.40 -67.16 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886705966.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.291 kcal (2) G-P(sol) polarization free energy of solvation -71.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.159 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds