Wall clock time and date at job start Tue Mar 31 2020 12:14:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46502 * 109.47031 * 2 1 4 4 C 1.46500 * 119.99590 * 85.94512 * 3 2 1 5 5 C 1.50701 * 109.46956 * 90.00296 * 4 3 2 6 6 H 1.07999 * 120.00067 * 359.97438 * 5 4 3 7 7 C 1.37878 * 119.99914 * 179.97438 * 5 4 3 8 8 N 1.31512 * 120.00027 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99909 * 179.97438 * 7 5 4 10 10 H 1.48493 * 109.46849 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.46653 * 120.00423 * 9 7 5 12 12 H 1.48504 * 109.46978 * 240.00437 * 9 7 5 13 13 C 1.34774 * 119.99786 * 265.94630 * 3 2 1 14 14 O 1.21549 * 119.99862 * 184.60362 * 13 3 2 15 15 C 1.47905 * 120.00485 * 4.60611 * 13 3 2 16 16 C 1.38903 * 121.10725 * 301.24840 * 15 13 3 17 17 C 1.39255 * 119.58312 * 180.02562 * 16 15 13 18 18 N 1.30997 * 121.88077 * 359.96938 * 17 16 15 19 19 C 1.33539 * 121.82875 * 0.03037 * 18 17 16 20 20 C 1.40684 * 120.96038 * 180.02562 * 19 18 17 21 21 C 1.36173 * 119.73519 * 179.20392 * 20 19 18 22 22 Cl 1.73597 * 119.48973 * 180.25833 * 21 20 19 23 23 C 1.39480 * 121.02440 * 0.72767 * 21 20 19 24 24 C 1.36221 * 120.82524 * 359.52877 * 23 21 20 25 25 C 1.40120 * 119.65554 * 359.97438 * 24 23 21 26 26 H 1.08996 * 109.46862 * 60.00318 * 1 2 3 27 27 H 1.09000 * 109.47152 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47144 * 299.99805 * 1 2 3 29 29 H 1.09001 * 109.46814 * 120.00165 * 2 1 3 30 30 H 1.08998 * 109.47144 * 240.00195 * 2 1 3 31 31 H 1.09007 * 109.46589 * 210.00021 * 4 3 2 32 32 H 1.08996 * 109.47436 * 330.00099 * 4 3 2 33 33 H 0.96994 * 120.00260 * 179.97438 * 8 7 5 34 34 H 1.08000 * 120.20538 * 359.97438 * 16 15 13 35 35 H 1.07998 * 119.05565 * 180.02562 * 17 16 15 36 36 H 1.07998 * 120.13069 * 359.95351 * 20 19 18 37 37 H 1.08004 * 119.59103 * 179.50211 * 23 21 20 38 38 H 1.07997 * 120.16962 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1779 2.1017 1.2656 5 6 3.5689 1.8763 1.8000 6 1 4.2643 1.2580 1.2519 7 6 3.9536 2.4596 2.9886 8 7 3.1066 3.2122 3.6562 9 14 5.6776 2.1797 3.6513 10 1 6.4293 1.3011 2.7197 11 1 6.3778 3.4834 3.7753 12 1 5.5960 1.5327 4.9855 13 6 2.3208 1.9890 -1.1643 14 8 2.8045 3.1041 -1.1600 15 6 2.0640 1.2993 -2.4472 16 6 2.6500 0.0726 -2.7324 17 6 2.3866 -0.5485 -3.9506 18 7 1.5962 -0.0094 -4.8454 19 6 0.9987 1.1670 -4.6399 20 6 0.1528 1.7289 -5.6135 21 6 -0.4566 2.9223 -5.3712 22 17 -1.5044 3.6067 -6.5743 23 6 -0.2444 3.6082 -4.1754 24 6 0.5723 3.0964 -3.2127 25 6 1.2073 1.8655 -3.4247 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5139 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 2.0208 3.1675 1.0992 32 1 1.4477 1.7350 1.9870 33 1 3.3771 3.6222 4.4926 34 1 3.3064 -0.3960 -2.0141 35 1 2.8464 -1.5023 -4.1632 36 1 -0.0221 1.2100 -6.5444 37 1 -0.7333 4.5570 -4.0107 38 1 0.7294 3.6367 -2.2908 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930464024.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:57 Heat of formation + Delta-G solvation = -1.591807 kcal Electronic energy + Delta-G solvation = -23887.966584 eV Core-core repulsion = 20334.594903 eV Total energy + Delta-G solvation = -3553.371681 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.088 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.30361 -40.48903 -38.63543 -37.32823 -37.01503 -35.14178 -34.38673 -31.72618 -31.64886 -31.28698 -29.25177 -26.38594 -25.09556 -24.88626 -24.24748 -23.32170 -20.57760 -19.52182 -18.78856 -18.50288 -18.18423 -17.53176 -16.95231 -16.37390 -16.34261 -15.60103 -15.54780 -15.46208 -15.23853 -14.84496 -14.59726 -14.49288 -14.17859 -13.92609 -13.62985 -13.34169 -13.16120 -13.10228 -12.76391 -12.70291 -12.59983 -12.32328 -12.21461 -12.08072 -11.98569 -11.71878 -11.49401 -11.24488 -10.66051 -10.48520 -9.84723 -9.62326 -9.40324 -8.24328 -6.38576 -1.00168 -0.45370 0.54473 0.90860 1.36974 1.39511 1.50763 1.57123 1.68558 2.08705 2.39410 2.85064 3.06070 3.15896 3.29142 3.48942 3.57676 3.75119 3.83112 4.04173 4.06703 4.28436 4.32740 4.36684 4.54313 4.63052 4.67494 4.79041 4.85823 4.88718 4.95750 4.98699 5.13793 5.15856 5.27284 5.29403 5.50289 5.52530 5.76157 6.01798 6.54554 6.69875 6.70014 7.12712 7.33640 8.83381 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.019895 B = 0.003428 C = 0.003223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1407.058610 B = 8166.975379 C = 8684.297199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.088 3.912 3 N -0.586 5.586 4 C 0.263 3.737 5 C -0.542 4.542 6 H 0.057 0.943 7 C 0.009 3.991 8 N -0.927 5.927 9 Si 0.967 3.033 10 H -0.265 1.265 11 H -0.284 1.284 12 H -0.270 1.270 13 C 0.544 3.456 14 O -0.577 6.577 15 C -0.064 4.064 16 C -0.135 4.135 17 C 0.152 3.848 18 N -0.472 5.472 19 C 0.128 3.872 20 C -0.080 4.080 21 C -0.014 4.014 22 Cl -0.047 7.047 23 C -0.102 4.102 24 C -0.092 4.092 25 C -0.085 4.085 26 H 0.044 0.956 27 H 0.096 0.904 28 H 0.044 0.956 29 H 0.084 0.916 30 H 0.105 0.895 31 H -0.001 1.001 32 H 0.029 0.971 33 H 0.267 0.733 34 H 0.167 0.833 35 H 0.216 0.784 36 H 0.167 0.833 37 H 0.157 0.843 38 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.653 -9.414 -17.741 21.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.034 4.034 3 N -0.315 5.315 4 C 0.142 3.858 5 C -0.580 4.580 6 H 0.075 0.925 7 C -0.190 4.190 8 N -0.567 5.567 9 Si 0.792 3.208 10 H -0.189 1.189 11 H -0.210 1.210 12 H -0.195 1.195 13 C 0.331 3.669 14 O -0.458 6.458 15 C -0.075 4.075 16 C -0.156 4.156 17 C -0.020 4.020 18 N -0.180 5.180 19 C 0.007 3.993 20 C -0.100 4.100 21 C -0.042 4.042 22 Cl -0.018 7.018 23 C -0.121 4.121 24 C -0.111 4.111 25 C -0.088 4.088 26 H 0.063 0.937 27 H 0.115 0.885 28 H 0.063 0.937 29 H 0.103 0.897 30 H 0.122 0.878 31 H 0.017 0.983 32 H 0.047 0.953 33 H 0.076 0.924 34 H 0.185 0.815 35 H 0.232 0.768 36 H 0.185 0.815 37 H 0.174 0.826 38 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -7.770 -9.035 -18.474 21.984 hybrid contribution 0.902 1.144 1.744 2.273 sum -6.867 -7.890 -16.730 19.731 Atomic orbital electron populations 1.22102 0.94964 1.03503 1.01178 1.22054 0.95312 0.81351 1.04689 1.48230 1.62020 1.15207 1.06061 1.18809 0.96187 0.91068 0.79695 1.21700 0.98922 1.31014 1.06372 0.92502 1.25836 1.01804 0.94423 0.96949 1.70047 1.37143 1.33055 1.16470 0.85372 0.79035 0.77978 0.78459 1.18876 1.21001 1.19465 1.18567 0.78485 0.85452 0.84359 1.90770 1.45644 1.21651 1.87724 1.20409 0.97689 0.95920 0.93517 1.22747 0.99708 0.92934 1.00172 1.23632 0.91404 1.00075 0.86913 1.67871 1.08265 1.09316 1.32538 1.18686 0.97279 0.91843 0.91533 1.20809 0.95166 0.94157 0.99826 1.20580 0.96754 0.95212 0.91695 1.98386 1.64401 1.84369 1.54649 1.20986 0.98340 1.01197 0.91531 1.20994 0.95835 0.94432 0.99868 1.18763 0.98498 0.96608 0.94929 0.93681 0.88490 0.93700 0.89726 0.87756 0.98293 0.95342 0.92387 0.81522 0.76763 0.81518 0.82572 0.86305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.16 10.24 71.98 0.74 -3.43 16 2 C 0.09 2.62 5.95 86.38 0.51 3.14 16 3 N -0.59 -24.33 2.46 -829.48 -2.04 -26.37 16 4 C 0.26 13.82 5.15 85.63 0.44 14.27 16 5 C -0.54 -30.37 9.39 25.60 0.24 -30.13 16 6 H 0.06 3.13 7.81 -2.91 -0.02 3.11 16 7 C 0.01 0.51 5.46 84.66 0.46 0.97 16 8 N -0.93 -55.08 13.29 21.45 0.28 -54.80 16 9 Si 0.97 43.98 29.54 68.60 2.03 46.01 16 10 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 11 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 12 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 13 C 0.54 22.89 6.34 86.80 0.55 23.44 16 14 O -0.58 -30.05 15.79 -3.87 -0.06 -30.11 16 15 C -0.06 -2.04 5.05 -19.68 -0.10 -2.14 16 16 C -0.14 -3.12 7.72 22.67 0.18 -2.95 16 17 C 0.15 2.75 11.14 85.06 0.95 3.69 16 18 N -0.47 -10.75 10.30 -188.75 -1.94 -12.70 16 19 C 0.13 3.32 6.61 40.34 0.27 3.58 16 20 C -0.08 -1.77 9.73 22.39 0.22 -1.55 16 21 C -0.01 -0.30 6.27 22.09 0.14 -0.16 16 22 Cl -0.05 -0.85 28.91 -2.72 -0.08 -0.93 16 23 C -0.10 -2.48 9.73 22.10 0.22 -2.27 16 24 C -0.09 -2.82 9.30 22.26 0.21 -2.61 16 25 C -0.09 -2.59 5.76 -21.09 -0.12 -2.71 16 26 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 27 H 0.10 1.85 8.14 -2.39 -0.02 1.84 16 28 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 29 H 0.08 2.57 8.10 -2.39 -0.02 2.55 16 30 H 0.10 2.45 4.21 -2.39 -0.01 2.44 16 31 H 0.00 -0.06 7.49 -2.38 -0.02 -0.08 16 32 H 0.03 1.52 8.07 -2.39 -0.02 1.50 16 33 H 0.27 14.87 8.31 -92.71 -0.77 14.10 16 34 H 0.17 3.21 7.23 -2.91 -0.02 3.19 16 35 H 0.22 1.78 8.06 -2.91 -0.02 1.76 16 36 H 0.17 2.92 8.06 -2.91 -0.02 2.90 16 37 H 0.16 3.13 8.06 -2.91 -0.02 3.10 16 38 H 0.12 4.25 6.68 -2.91 -0.02 4.23 16 Total: -1.00 -72.78 341.92 4.17 -68.61 By element: Atomic # 1 Polarization: 8.05 SS G_CDS: 1.09 Total: 9.14 kcal Atomic # 6 Polarization: -3.75 SS G_CDS: 4.89 Total: 1.15 kcal Atomic # 7 Polarization: -90.17 SS G_CDS: -3.70 Total: -93.86 kcal Atomic # 8 Polarization: -30.05 SS G_CDS: -0.06 Total: -30.11 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.01 kcal Atomic # 17 Polarization: -0.85 SS G_CDS: -0.08 Total: -0.93 kcal Total: -72.78 4.17 -68.61 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930464024.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.016 kcal (2) G-P(sol) polarization free energy of solvation -72.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds