Wall clock time and date at job start Tue Mar 31 2020 12:02:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08993 * 109.47468 * 2 1 4 4 C 1.50702 * 109.46967 * 120.00129 * 2 1 3 5 5 H 1.07995 * 120.00038 * 119.99562 * 4 2 1 6 6 C 1.37876 * 119.99824 * 299.99691 * 4 2 1 7 7 N 1.31517 * 119.99887 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00043 * 180.02562 * 6 4 2 9 9 H 1.48509 * 109.46945 * 59.99697 * 8 6 4 10 10 H 1.48501 * 109.47252 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.47011 * 300.00078 * 8 6 4 12 12 N 1.46507 * 109.46929 * 239.99667 * 2 1 3 13 13 C 1.46504 * 119.99767 * 300.00618 * 12 2 1 14 14 C 1.34774 * 119.99811 * 120.00083 * 12 2 1 15 15 O 1.21538 * 120.00105 * 4.52095 * 14 12 2 16 16 C 1.47910 * 119.99788 * 184.51856 * 14 12 2 17 17 C 1.38907 * 121.10950 * 310.30831 * 16 14 12 18 18 C 1.39255 * 119.57652 * 180.02562 * 17 16 14 19 19 N 1.31005 * 121.88603 * 359.97438 * 18 17 16 20 20 C 1.33536 * 121.82970 * 0.04490 * 19 18 17 21 21 C 1.40680 * 120.96912 * 179.97438 * 20 19 18 22 22 C 1.36175 * 119.73574 * 179.97438 * 21 20 19 23 23 Cl 1.73598 * 119.48527 * 179.97438 * 22 21 20 24 24 C 1.39478 * 121.02781 * 359.70744 * 22 21 20 25 25 C 1.36216 * 120.82322 * 0.57526 * 24 22 21 26 26 C 1.40128 * 119.65384 * 359.45064 * 25 24 22 27 27 H 1.08997 * 109.46670 * 59.99620 * 1 2 3 28 28 H 1.08993 * 109.47468 * 179.97438 * 1 2 3 29 29 H 1.09006 * 109.46794 * 300.00250 * 1 2 3 30 30 H 0.97001 * 119.99303 * 180.02562 * 7 6 4 31 31 H 1.08999 * 109.46879 * 273.16179 * 13 12 2 32 32 H 1.08996 * 109.47381 * 33.15735 * 13 12 2 33 33 H 1.08999 * 109.46821 * 153.16178 * 13 12 2 34 34 H 1.07993 * 120.20937 * 359.97438 * 17 16 14 35 35 H 1.08001 * 119.05235 * 179.97438 * 18 17 16 36 36 H 1.07995 * 120.12886 * 359.95430 * 21 20 19 37 37 H 1.08002 * 119.58942 * 180.30653 * 24 22 21 38 38 H 1.07997 * 120.17470 * 179.73404 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6993 -0.2394 2.4827 7 7 0.9437 0.8303 2.6033 8 14 2.3225 -1.1195 4.0080 9 1 3.8076 -1.1190 4.0077 10 1 1.8279 -0.4191 5.2205 11 1 1.8280 -2.5198 4.0082 12 7 2.0184 -0.6907 -1.1962 13 6 1.6643 -2.0933 -1.4280 14 6 2.7932 -0.0358 -2.0834 15 8 3.1548 1.1012 -1.8515 16 6 3.2036 -0.7007 -3.3392 17 6 3.7572 -1.9746 -3.3291 18 6 4.1328 -2.5704 -4.5304 19 7 3.9795 -1.9637 -5.6814 20 6 3.4550 -0.7388 -5.7675 21 6 3.2991 -0.1039 -7.0132 22 6 2.7607 1.1455 -7.0718 23 17 2.5720 1.9231 -8.6124 24 6 2.3534 1.8080 -5.9139 25 6 2.4946 1.2259 -4.6905 26 6 3.0452 -0.0590 -4.5935 27 1 -0.3632 0.5139 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 0.7097 1.1619 3.4844 31 1 2.3845 -2.7379 -0.9241 32 1 0.6664 -2.2860 -1.0340 33 1 1.6785 -2.2995 -2.4982 34 1 3.8962 -2.4993 -2.3955 35 1 4.5628 -3.5610 -4.5127 36 1 3.6056 -0.6053 -7.9192 37 1 1.9247 2.7965 -5.9879 38 1 2.1796 1.7501 -3.8004 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931940206.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:02:59 Heat of formation + Delta-G solvation = 20.270785 kcal Electronic energy + Delta-G solvation = -23826.981439 eV Core-core repulsion = 20274.557791 eV Total energy + Delta-G solvation = -3552.423648 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.088 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.18494 -39.05216 -37.66502 -36.32731 -35.54348 -33.74808 -32.73215 -30.64401 -30.40746 -29.20950 -26.49149 -25.36588 -24.92569 -23.76352 -23.12574 -21.08231 -19.12870 -18.32304 -17.62008 -17.03759 -16.42402 -16.02700 -15.40912 -15.28690 -14.81502 -14.47166 -14.42069 -14.10127 -14.04776 -13.67094 -13.01186 -12.99262 -12.71807 -12.49533 -12.13896 -11.80208 -11.66149 -11.64308 -11.33051 -11.19617 -11.14786 -10.90429 -10.83107 -10.45173 -10.33125 -10.24463 -10.02033 -9.30338 -9.14682 -8.87216 -8.52459 -8.39818 -7.81031 -6.16338 -4.25054 0.04120 0.54553 1.61607 1.82447 2.62310 3.12946 3.22589 3.28288 3.29173 3.57658 3.91362 4.11005 4.31215 4.47814 4.61912 4.65764 4.74599 4.81748 5.02737 5.15263 5.31058 5.40623 5.55884 5.64029 5.69935 5.79189 5.90574 5.95211 6.15009 6.18358 6.30337 6.50539 6.63809 6.68802 6.90832 7.22430 7.34512 7.59648 7.68149 7.87840 8.05049 8.29806 8.62553 8.81424 9.41580 10.89062 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.023345 B = 0.003269 C = 0.002996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.087247 B = 8561.973164 C = 9342.458204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.258 3.742 3 H 0.066 0.934 4 C -0.529 4.529 5 H 0.060 0.940 6 C 0.066 3.934 7 N -0.887 5.887 8 Si 0.900 3.100 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.276 1.276 12 N -0.577 5.577 13 C 0.078 3.922 14 C 0.542 3.458 15 O -0.534 6.534 16 C -0.043 4.043 17 C -0.147 4.147 18 C 0.137 3.863 19 N -0.469 5.469 20 C 0.137 3.863 21 C -0.089 4.089 22 C -0.011 4.011 23 Cl -0.066 7.066 24 C -0.117 4.117 25 C -0.063 4.063 26 C -0.073 4.073 27 H 0.012 0.988 28 H 0.032 0.968 29 H 0.096 0.904 30 H 0.265 0.735 31 H 0.056 0.944 32 H 0.075 0.925 33 H 0.056 0.944 34 H 0.150 0.850 35 H 0.167 0.833 36 H 0.146 0.854 37 H 0.140 0.860 38 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.944 -4.599 -16.855 17.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.159 3.841 3 H 0.083 0.917 4 C -0.567 4.567 5 H 0.078 0.922 6 C -0.137 4.137 7 N -0.525 5.525 8 Si 0.728 3.272 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.202 1.202 12 N -0.307 5.307 13 C -0.066 4.066 14 C 0.328 3.672 15 O -0.413 6.413 16 C -0.054 4.054 17 C -0.167 4.167 18 C -0.034 4.034 19 N -0.178 5.178 20 C 0.015 3.985 21 C -0.109 4.109 22 C -0.040 4.040 23 Cl -0.037 7.037 24 C -0.136 4.136 25 C -0.082 4.082 26 C -0.076 4.076 27 H 0.031 0.969 28 H 0.051 0.949 29 H 0.115 0.885 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.094 0.906 33 H 0.075 0.925 34 H 0.167 0.833 35 H 0.184 0.816 36 H 0.164 0.836 37 H 0.158 0.842 38 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 2.216 -4.135 -17.510 18.128 hybrid contribution 0.076 -0.163 1.594 1.604 sum 2.293 -4.298 -15.916 16.645 Atomic orbital electron populations 1.22119 0.97897 0.99611 1.01060 1.19050 0.91002 0.94537 0.79527 0.91656 1.21227 1.32231 1.13162 0.90123 0.92211 1.24886 0.94831 0.94942 0.99002 1.69859 1.36108 1.22453 1.24058 0.86527 0.79282 0.79565 0.81864 1.20181 1.21108 1.20168 1.48260 1.47614 1.11829 1.22989 1.21811 1.02124 0.82885 0.99741 1.18038 0.80180 0.86205 0.82805 1.90775 1.55289 1.17988 1.77247 1.20752 0.96608 0.94143 0.93910 1.22583 0.98808 0.94463 1.00895 1.22940 0.94157 0.99510 0.86809 1.67766 1.12960 1.08261 1.28789 1.18519 0.97079 0.90992 0.91905 1.20562 0.99906 0.93208 0.97179 1.20591 1.02086 0.94103 0.87178 1.98377 1.96115 1.80736 1.28517 1.20841 1.01177 1.01099 0.90451 1.21263 0.95250 0.93209 0.98469 1.18699 1.00438 0.95848 0.92588 0.96886 0.94909 0.88520 0.92491 0.92570 0.90615 0.92516 0.83254 0.81562 0.83592 0.84217 0.83108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.37 8.94 37.16 0.33 -3.04 16 2 C 0.26 6.26 2.63 -69.07 -0.18 6.08 16 3 H 0.07 1.84 6.91 -51.93 -0.36 1.48 16 4 C -0.53 -13.67 8.37 -34.44 -0.29 -13.96 16 5 H 0.06 1.51 7.56 -52.49 -0.40 1.11 16 6 C 0.07 1.74 5.30 -17.82 -0.09 1.65 16 7 N -0.89 -24.25 11.32 55.43 0.63 -23.63 16 8 Si 0.90 20.36 29.54 -169.99 -5.02 15.34 16 9 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 10 H -0.29 -6.45 7.11 56.52 0.40 -6.04 16 11 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 12 N -0.58 -11.60 2.75 -176.35 -0.49 -12.09 16 13 C 0.08 1.22 8.40 59.85 0.50 1.73 16 14 C 0.54 10.78 6.69 -12.30 -0.08 10.69 16 15 O -0.53 -12.49 14.84 5.33 0.08 -12.41 16 16 C -0.04 -0.68 4.92 -104.34 -0.51 -1.19 16 17 C -0.15 -1.87 7.73 -38.96 -0.30 -2.17 16 18 C 0.14 1.53 11.14 -17.53 -0.20 1.33 16 19 N -0.47 -6.17 10.30 -11.01 -0.11 -6.29 16 20 C 0.14 1.92 6.61 -84.88 -0.56 1.36 16 21 C -0.09 -1.09 9.72 -39.40 -0.38 -1.47 16 22 C -0.01 -0.13 6.27 -39.86 -0.25 -0.38 16 23 Cl -0.07 -0.67 28.91 -51.86 -1.50 -2.17 16 24 C -0.12 -1.44 9.73 -39.85 -0.39 -1.83 16 25 C -0.06 -0.93 9.22 -39.60 -0.37 -1.29 16 26 C -0.07 -1.12 5.76 -106.51 -0.61 -1.73 16 27 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 28 H 0.03 0.68 6.68 -51.93 -0.35 0.34 16 29 H 0.10 2.42 6.07 -51.93 -0.32 2.11 16 30 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 31 H 0.06 0.82 7.55 -51.93 -0.39 0.42 16 32 H 0.08 1.20 6.44 -51.93 -0.33 0.86 16 33 H 0.06 0.74 5.69 -51.93 -0.30 0.45 16 34 H 0.15 1.67 6.72 -52.49 -0.35 1.32 16 35 H 0.17 1.20 8.06 -52.49 -0.42 0.78 16 36 H 0.15 1.53 8.06 -52.49 -0.42 1.11 16 37 H 0.14 1.42 8.06 -52.49 -0.42 1.00 16 38 H 0.15 2.44 6.34 -52.49 -0.33 2.10 16 LS Contribution 331.01 15.07 4.99 4.99 Total: -1.00 -29.84 331.01 -8.76 -38.59 By element: Atomic # 1 Polarization: 5.84 SS G_CDS: -3.95 Total: 1.88 kcal Atomic # 6 Polarization: -0.84 SS G_CDS: -3.38 Total: -4.22 kcal Atomic # 7 Polarization: -42.03 SS G_CDS: 0.03 Total: -42.00 kcal Atomic # 8 Polarization: -12.49 SS G_CDS: 0.08 Total: -12.41 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.34 kcal Atomic # 17 Polarization: -0.67 SS G_CDS: -1.50 Total: -2.17 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -29.84 -8.76 -38.59 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931940206.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.864 kcal (2) G-P(sol) polarization free energy of solvation -29.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.593 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds