Wall clock time and date at job start Tue Mar 31 2020 12:02:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08993 * 109.47468 * 2 1 4 4 C 1.50702 * 109.46967 * 120.00129 * 2 1 3 5 5 H 1.07995 * 120.00038 * 119.99562 * 4 2 1 6 6 C 1.37876 * 119.99824 * 299.99691 * 4 2 1 7 7 N 1.31517 * 119.99887 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00043 * 180.02562 * 6 4 2 9 9 H 1.48509 * 109.46945 * 59.99697 * 8 6 4 10 10 H 1.48501 * 109.47252 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.47011 * 300.00078 * 8 6 4 12 12 N 1.46507 * 109.46929 * 239.99667 * 2 1 3 13 13 C 1.46504 * 119.99767 * 300.00618 * 12 2 1 14 14 C 1.34774 * 119.99811 * 120.00083 * 12 2 1 15 15 O 1.21538 * 120.00105 * 4.52095 * 14 12 2 16 16 C 1.47910 * 119.99788 * 184.51856 * 14 12 2 17 17 C 1.38907 * 121.10950 * 310.30831 * 16 14 12 18 18 C 1.39255 * 119.57652 * 180.02562 * 17 16 14 19 19 N 1.31005 * 121.88603 * 359.97438 * 18 17 16 20 20 C 1.33536 * 121.82970 * 0.04490 * 19 18 17 21 21 C 1.40680 * 120.96912 * 179.97438 * 20 19 18 22 22 C 1.36175 * 119.73574 * 179.97438 * 21 20 19 23 23 Cl 1.73598 * 119.48527 * 179.97438 * 22 21 20 24 24 C 1.39478 * 121.02781 * 359.70744 * 22 21 20 25 25 C 1.36216 * 120.82322 * 0.57526 * 24 22 21 26 26 C 1.40128 * 119.65384 * 359.45064 * 25 24 22 27 27 H 1.08997 * 109.46670 * 59.99620 * 1 2 3 28 28 H 1.08993 * 109.47468 * 179.97438 * 1 2 3 29 29 H 1.09006 * 109.46794 * 300.00250 * 1 2 3 30 30 H 0.97001 * 119.99303 * 180.02562 * 7 6 4 31 31 H 1.08999 * 109.46879 * 273.16179 * 13 12 2 32 32 H 1.08996 * 109.47381 * 33.15735 * 13 12 2 33 33 H 1.08999 * 109.46821 * 153.16178 * 13 12 2 34 34 H 1.07993 * 120.20937 * 359.97438 * 17 16 14 35 35 H 1.08001 * 119.05235 * 179.97438 * 18 17 16 36 36 H 1.07995 * 120.12886 * 359.95430 * 21 20 19 37 37 H 1.08002 * 119.58942 * 180.30653 * 24 22 21 38 38 H 1.07997 * 120.17470 * 179.73404 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6993 -0.2394 2.4827 7 7 0.9437 0.8303 2.6033 8 14 2.3225 -1.1195 4.0080 9 1 3.8076 -1.1190 4.0077 10 1 1.8279 -0.4191 5.2205 11 1 1.8280 -2.5198 4.0082 12 7 2.0184 -0.6907 -1.1962 13 6 1.6643 -2.0933 -1.4280 14 6 2.7932 -0.0358 -2.0834 15 8 3.1548 1.1012 -1.8515 16 6 3.2036 -0.7007 -3.3392 17 6 3.7572 -1.9746 -3.3291 18 6 4.1328 -2.5704 -4.5304 19 7 3.9795 -1.9637 -5.6814 20 6 3.4550 -0.7388 -5.7675 21 6 3.2991 -0.1039 -7.0132 22 6 2.7607 1.1455 -7.0718 23 17 2.5720 1.9231 -8.6124 24 6 2.3534 1.8080 -5.9139 25 6 2.4946 1.2259 -4.6905 26 6 3.0452 -0.0590 -4.5935 27 1 -0.3632 0.5139 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 0.7097 1.1619 3.4844 31 1 2.3845 -2.7379 -0.9241 32 1 0.6664 -2.2860 -1.0340 33 1 1.6785 -2.2995 -2.4982 34 1 3.8962 -2.4993 -2.3955 35 1 4.5628 -3.5610 -4.5127 36 1 3.6056 -0.6053 -7.9192 37 1 1.9247 2.7965 -5.9879 38 1 2.1796 1.7501 -3.8004 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931940206.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:02:58 Heat of formation + Delta-G solvation = 3.394541 kcal Electronic energy + Delta-G solvation = -23827.713248 eV Core-core repulsion = 20274.557791 eV Total energy + Delta-G solvation = -3553.155457 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.088 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.28942 -40.51438 -38.63510 -37.39692 -37.09688 -35.17202 -34.31468 -31.75281 -31.63676 -30.71593 -27.87123 -27.32763 -26.15209 -24.76940 -24.33524 -22.61522 -20.52966 -19.46384 -18.70627 -18.56859 -18.02995 -17.52605 -16.85074 -16.41713 -16.30033 -15.75542 -15.55131 -15.30289 -15.17425 -14.81528 -14.60117 -14.37196 -13.94593 -13.85820 -13.50329 -13.17685 -13.06543 -12.95507 -12.76149 -12.74082 -12.61140 -12.30452 -12.20718 -12.14640 -12.06110 -11.50052 -11.30911 -11.17560 -10.57811 -10.44986 -9.84988 -9.48745 -9.41101 -8.15914 -6.32564 -1.01058 -0.44541 0.52337 0.91218 1.42961 1.45052 1.52219 1.60469 1.72563 2.10763 2.43808 2.86904 3.12843 3.17437 3.32608 3.51403 3.57728 3.76031 3.84422 4.07831 4.27925 4.31638 4.40886 4.61328 4.65293 4.69565 4.74270 4.81547 4.85398 4.96341 4.97242 5.00421 5.16511 5.27757 5.41934 5.51127 5.54888 5.62705 5.97032 6.11726 6.63004 6.69913 6.73545 7.13082 7.39697 8.88528 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.023345 B = 0.003269 C = 0.002996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.087247 B = 8561.973164 C = 9342.458204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.263 3.737 3 H 0.013 0.987 4 C -0.540 4.540 5 H 0.065 0.935 6 C 0.016 3.984 7 N -0.918 5.918 8 Si 0.965 3.035 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.261 1.261 12 N -0.584 5.584 13 C 0.075 3.925 14 C 0.540 3.460 15 O -0.585 6.585 16 C -0.072 4.072 17 C -0.127 4.127 18 C 0.148 3.852 19 N -0.471 5.471 20 C 0.125 3.875 21 C -0.082 4.082 22 C -0.014 4.014 23 Cl -0.048 7.048 24 C -0.104 4.104 25 C -0.092 4.092 26 C -0.085 4.085 27 H 0.020 0.980 28 H 0.050 0.950 29 H 0.070 0.930 30 H 0.265 0.735 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.085 0.915 34 H 0.168 0.832 35 H 0.216 0.784 36 H 0.167 0.833 37 H 0.157 0.843 38 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.750 -7.497 -18.490 20.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.162 3.838 3 H 0.031 0.969 4 C -0.578 4.578 5 H 0.083 0.917 6 C -0.183 4.183 7 N -0.556 5.556 8 Si 0.790 3.210 9 H -0.202 1.202 10 H -0.212 1.212 11 H -0.185 1.185 12 N -0.313 5.313 13 C -0.067 4.067 14 C 0.328 3.672 15 O -0.467 6.467 16 C -0.083 4.083 17 C -0.147 4.147 18 C -0.024 4.024 19 N -0.179 5.179 20 C 0.004 3.996 21 C -0.101 4.101 22 C -0.043 4.043 23 Cl -0.019 7.019 24 C -0.122 4.122 25 C -0.111 4.111 26 C -0.088 4.088 27 H 0.039 0.961 28 H 0.069 0.931 29 H 0.089 0.911 30 H 0.074 0.926 31 H 0.091 0.909 32 H 0.092 0.908 33 H 0.103 0.897 34 H 0.186 0.814 35 H 0.232 0.768 36 H 0.184 0.816 37 H 0.174 0.826 38 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 3.010 -7.067 -19.179 20.660 hybrid contribution -0.148 0.758 1.994 2.138 sum 2.862 -6.309 -17.185 18.529 Atomic orbital electron populations 1.21909 0.96915 1.00368 1.00130 1.18624 0.91681 0.92317 0.81195 0.96944 1.21528 1.32160 1.13262 0.90860 0.91651 1.25725 0.95002 0.95596 1.02025 1.70010 1.37221 1.23824 1.24567 0.85510 0.78426 0.79052 0.78050 1.20228 1.21168 1.18509 1.48198 1.47625 1.13526 1.21918 1.22053 1.02414 0.80298 1.01897 1.18619 0.79166 0.85653 0.83770 1.90732 1.57098 1.20362 1.78461 1.20406 0.99980 0.95876 0.92041 1.22883 0.96488 0.92773 1.02575 1.23659 0.92677 1.00774 0.85276 1.67866 1.12679 1.07735 1.29670 1.18696 0.97568 0.91532 0.91854 1.20799 0.98844 0.93136 0.97290 1.20593 1.01844 0.94171 0.87681 1.98385 1.96001 1.80419 1.27050 1.21004 0.99745 1.01532 0.89905 1.21092 0.97595 0.93875 0.98507 1.18804 1.00949 0.96065 0.92954 0.96125 0.93132 0.91088 0.92603 0.90941 0.90750 0.89655 0.81448 0.76796 0.81583 0.82568 0.85818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.30 8.94 71.98 0.64 -5.66 16 2 C 0.26 13.28 2.63 44.25 0.12 13.39 16 3 H 0.01 0.76 6.91 -2.39 -0.02 0.75 16 4 C -0.54 -28.29 8.37 25.60 0.21 -28.07 16 5 H 0.07 3.27 7.56 -2.91 -0.02 3.24 16 6 C 0.02 0.87 5.30 84.65 0.45 1.32 16 7 N -0.92 -51.77 11.32 21.45 0.24 -51.53 16 8 Si 0.96 41.76 29.54 68.60 2.03 43.78 16 9 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 10 H -0.29 -12.31 7.11 99.48 0.71 -11.61 16 11 H -0.26 -10.56 7.11 99.48 0.71 -9.86 16 12 N -0.58 -23.88 2.75 -830.12 -2.29 -26.17 16 13 C 0.08 2.24 8.40 127.77 1.07 3.31 16 14 C 0.54 22.31 6.69 86.81 0.58 22.89 16 15 O -0.58 -29.42 14.84 -3.83 -0.06 -29.48 16 16 C -0.07 -2.27 4.92 -19.68 -0.10 -2.37 16 17 C -0.13 -2.88 7.73 22.67 0.18 -2.71 16 18 C 0.15 2.69 11.14 85.06 0.95 3.64 16 19 N -0.47 -10.87 10.30 -188.75 -1.94 -12.81 16 20 C 0.13 3.27 6.61 40.34 0.27 3.54 16 21 C -0.08 -1.82 9.72 22.39 0.22 -1.60 16 22 C -0.01 -0.31 6.27 22.09 0.14 -0.18 16 23 Cl -0.05 -0.87 28.91 -2.72 -0.08 -0.95 16 24 C -0.10 -2.53 9.73 22.10 0.22 -2.32 16 25 C -0.09 -2.82 9.22 22.26 0.21 -2.62 16 26 C -0.08 -2.60 5.76 -21.09 -0.12 -2.72 16 27 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 28 H 0.05 2.12 6.68 -2.39 -0.02 2.11 16 29 H 0.07 3.70 6.07 -2.38 -0.01 3.69 16 30 H 0.26 14.23 8.31 -92.71 -0.77 13.46 16 31 H 0.07 1.92 7.55 -2.39 -0.02 1.90 16 32 H 0.07 2.23 6.44 -2.39 -0.02 2.21 16 33 H 0.09 2.03 5.69 -2.39 -0.01 2.02 16 34 H 0.17 3.16 6.72 -2.91 -0.02 3.14 16 35 H 0.22 1.80 8.06 -2.91 -0.02 1.78 16 36 H 0.17 2.97 8.06 -2.91 -0.02 2.94 16 37 H 0.16 3.15 8.06 -2.91 -0.02 3.12 16 38 H 0.12 4.44 6.34 -2.91 -0.02 4.42 16 Total: -1.00 -68.37 331.01 4.04 -64.34 By element: Atomic # 1 Polarization: 11.86 SS G_CDS: 1.11 Total: 12.96 kcal Atomic # 6 Polarization: -5.17 SS G_CDS: 5.03 Total: -0.15 kcal Atomic # 7 Polarization: -86.52 SS G_CDS: -3.99 Total: -90.51 kcal Atomic # 8 Polarization: -29.42 SS G_CDS: -0.06 Total: -29.48 kcal Atomic # 14 Polarization: 41.76 SS G_CDS: 2.03 Total: 43.78 kcal Atomic # 17 Polarization: -0.87 SS G_CDS: -0.08 Total: -0.95 kcal Total: -68.37 4.04 -64.34 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931940206.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.732 kcal (2) G-P(sol) polarization free energy of solvation -68.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.337 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds