Wall clock time and date at job start Tue Mar 31 2020 12:03:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.47118 * 2 1 4 4 C 1.50699 * 109.47317 * 240.00543 * 2 1 3 5 5 H 1.08001 * 119.99848 * 239.99927 * 4 2 1 6 6 C 1.37874 * 120.00514 * 59.99376 * 4 2 1 7 7 N 1.31523 * 119.99659 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00386 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.46846 * 89.99886 * 8 6 4 10 10 H 1.48495 * 109.47073 * 210.00050 * 8 6 4 11 11 H 1.48496 * 109.47058 * 330.00404 * 8 6 4 12 12 N 1.46493 * 109.47480 * 120.00016 * 2 1 3 13 13 C 1.46504 * 120.00135 * 59.99803 * 12 2 1 14 14 C 1.34784 * 120.00275 * 240.00449 * 12 2 1 15 15 O 1.21540 * 119.99688 * 4.63147 * 14 12 2 16 16 C 1.47906 * 120.00125 * 184.62861 * 14 12 2 17 17 C 1.38897 * 121.11029 * 310.53821 * 16 14 12 18 18 C 1.39259 * 119.58420 * 180.02562 * 17 16 14 19 19 N 1.30999 * 121.88032 * 359.96912 * 18 17 16 20 20 C 1.33543 * 121.82867 * 0.02562 * 19 18 17 21 21 C 1.40680 * 120.96238 * 180.02562 * 20 19 18 22 22 C 1.36180 * 119.73571 * 179.20369 * 21 20 19 23 23 Cl 1.73599 * 119.48636 * 180.25535 * 22 21 20 24 24 C 1.39476 * 121.02197 * 0.73384 * 22 21 20 25 25 C 1.36214 * 120.82601 * 359.52451 * 24 22 21 26 26 C 1.40119 * 119.65781 * 359.97438 * 25 24 22 27 27 H 1.09001 * 109.47145 * 299.99759 * 1 2 3 28 28 H 1.09004 * 109.47238 * 59.99708 * 1 2 3 29 29 H 1.09001 * 109.47118 * 180.02562 * 1 2 3 30 30 H 0.96998 * 119.99689 * 180.02562 * 7 6 4 31 31 H 1.08999 * 109.47211 * 264.95402 * 13 12 2 32 32 H 1.08995 * 109.47219 * 144.94521 * 13 12 2 33 33 H 1.08999 * 109.46627 * 24.94942 * 13 12 2 34 34 H 1.08003 * 120.20957 * 359.96742 * 17 16 14 35 35 H 1.07997 * 119.06110 * 179.97438 * 18 17 16 36 36 H 1.08006 * 120.12825 * 359.95515 * 21 20 19 37 37 H 1.08001 * 119.58355 * 179.49557 * 24 22 21 38 38 H 1.08005 * 120.17276 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1314 6 6 1.6993 -0.2393 -2.4828 7 7 0.9434 0.8303 -2.6034 8 14 2.3214 -1.1202 -4.0080 9 1 1.3429 -2.1616 -4.4119 10 1 2.4866 -0.1412 -5.1123 11 1 3.6294 -1.7581 -3.7123 12 7 2.0184 -0.6906 1.1961 13 6 1.6645 -2.0932 1.4280 14 6 2.7932 -0.0355 2.0833 15 8 3.0175 1.1498 1.9355 16 6 3.3705 -0.7592 3.2369 17 6 2.5800 -1.5626 4.0486 18 6 3.1566 -2.2291 5.1269 19 7 4.4327 -2.1232 5.4036 20 6 5.2528 -1.3691 4.6672 21 6 6.6205 -1.2688 4.9806 22 6 7.4374 -0.5056 4.2030 23 17 9.1255 -0.3917 4.5918 24 6 6.9371 0.1939 3.1050 25 6 5.6172 0.1241 2.7753 26 6 4.7503 -0.6602 3.5477 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 0.7088 1.1614 -3.4844 31 1 0.7883 -2.1448 2.0744 32 1 2.4998 -2.6043 1.9066 33 1 1.4420 -2.5740 0.4754 34 1 1.5246 -1.6689 3.8455 35 1 2.5341 -2.8513 5.7527 36 1 7.0234 -1.8047 5.8274 37 1 7.6043 0.7988 2.5089 38 1 5.2410 0.6704 1.9231 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931940208.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:03:02 Heat of formation + Delta-G solvation = 18.781590 kcal Electronic energy + Delta-G solvation = -23882.531814 eV Core-core repulsion = 20330.043589 eV Total energy + Delta-G solvation = -3552.488225 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.088 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.15830 -39.04600 -37.63792 -36.29748 -35.53971 -33.72969 -32.73399 -30.61971 -30.37165 -29.21964 -26.47610 -25.35174 -24.91974 -23.74074 -23.10011 -21.08688 -19.13667 -18.29982 -17.58705 -17.00183 -16.47373 -16.03048 -15.43370 -15.24330 -14.76284 -14.46988 -14.40060 -14.09025 -14.01841 -13.63189 -13.04832 -12.96088 -12.62566 -12.48757 -12.09762 -11.79492 -11.74479 -11.54891 -11.29507 -11.18321 -11.13453 -10.93595 -10.84340 -10.40393 -10.37805 -10.24734 -9.99441 -9.33018 -9.13108 -8.84716 -8.53616 -8.37623 -7.81585 -6.17679 -4.26670 0.06624 0.56991 1.64285 1.85525 2.65107 3.10491 3.20297 3.28284 3.30998 3.60193 3.94631 4.12672 4.30041 4.50150 4.62446 4.66818 4.77594 4.83575 5.05372 5.14039 5.31959 5.43381 5.61447 5.63803 5.72412 5.81275 5.84801 5.98748 6.21326 6.23556 6.33834 6.53365 6.63734 6.70718 6.92447 7.21808 7.36079 7.59338 7.69677 7.87709 8.04574 8.29451 8.61363 8.81171 9.40318 10.87631 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.015201 B = 0.003776 C = 0.003290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1841.543502 B = 7413.110795 C = 8509.005449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.258 3.742 3 H 0.065 0.935 4 C -0.531 4.531 5 H 0.060 0.940 6 C 0.067 3.933 7 N -0.885 5.885 8 Si 0.899 3.101 9 H -0.279 1.279 10 H -0.284 1.284 11 H -0.274 1.274 12 N -0.577 5.577 13 C 0.077 3.923 14 C 0.543 3.457 15 O -0.536 6.536 16 C -0.041 4.041 17 C -0.150 4.150 18 C 0.137 3.863 19 N -0.469 5.469 20 C 0.138 3.862 21 C -0.091 4.091 22 C -0.010 4.010 23 Cl -0.067 7.067 24 C -0.117 4.117 25 C -0.061 4.061 26 C -0.073 4.073 27 H 0.012 0.988 28 H 0.095 0.905 29 H 0.031 0.969 30 H 0.265 0.735 31 H 0.048 0.952 32 H 0.054 0.946 33 H 0.087 0.913 34 H 0.148 0.852 35 H 0.167 0.833 36 H 0.146 0.854 37 H 0.140 0.860 38 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.749 -6.241 13.811 16.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.158 3.842 3 H 0.083 0.917 4 C -0.569 4.569 5 H 0.079 0.921 6 C -0.136 4.136 7 N -0.523 5.523 8 Si 0.727 3.273 9 H -0.205 1.205 10 H -0.210 1.210 11 H -0.199 1.199 12 N -0.307 5.307 13 C -0.066 4.066 14 C 0.329 3.671 15 O -0.414 6.414 16 C -0.052 4.052 17 C -0.171 4.171 18 C -0.035 4.035 19 N -0.178 5.178 20 C 0.016 3.984 21 C -0.110 4.110 22 C -0.038 4.038 23 Cl -0.038 7.038 24 C -0.136 4.136 25 C -0.080 4.080 26 C -0.075 4.075 27 H 0.031 0.969 28 H 0.114 0.886 29 H 0.050 0.950 30 H 0.075 0.925 31 H 0.066 0.934 32 H 0.073 0.927 33 H 0.105 0.895 34 H 0.166 0.834 35 H 0.184 0.816 36 H 0.164 0.836 37 H 0.158 0.842 38 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 7.358 -5.894 14.266 17.099 hybrid contribution -0.036 -0.138 -1.529 1.535 sum 7.322 -6.031 12.737 15.881 Atomic orbital electron populations 1.22094 0.97799 0.99586 1.01040 1.19057 0.91185 0.94520 0.79395 0.91679 1.21283 1.32276 1.13240 0.90145 0.92139 1.24880 0.94812 0.94902 0.98985 1.69876 1.36064 1.22407 1.23969 0.86479 0.79244 0.79335 0.82284 1.20516 1.21003 1.19882 1.48265 1.47537 1.11822 1.23030 1.21818 0.98925 0.83008 1.02894 1.18043 0.80010 0.86899 0.82177 1.90770 1.61032 1.14646 1.74996 1.20744 0.93100 0.95149 0.96241 1.22547 1.01927 0.96542 0.96038 1.22918 0.90856 0.95614 0.94084 1.67761 1.04911 1.16692 1.28428 1.18515 0.93501 0.94713 0.91706 1.20555 0.90664 0.99461 1.00333 1.20599 0.85594 1.00292 0.97331 1.98376 1.14438 1.97237 1.93709 1.20850 0.96059 1.00162 0.96519 1.21300 0.92112 0.95561 0.99041 1.18700 0.93218 0.98948 0.96674 0.96857 0.88622 0.94999 0.92529 0.93385 0.92695 0.89477 0.83407 0.81628 0.83605 0.84188 0.82940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.33 8.97 37.16 0.33 -2.99 16 2 C 0.26 6.23 2.63 -69.09 -0.18 6.05 16 3 H 0.07 1.83 6.91 -51.93 -0.36 1.47 16 4 C -0.53 -13.65 7.96 -34.44 -0.27 -13.93 16 5 H 0.06 1.54 7.42 -52.49 -0.39 1.15 16 6 C 0.07 1.76 5.30 -17.82 -0.09 1.66 16 7 N -0.89 -24.10 11.32 55.43 0.63 -23.47 16 8 Si 0.90 20.31 29.54 -169.99 -5.02 15.29 16 9 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 10 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 11 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 12 N -0.58 -11.59 2.75 -176.36 -0.49 -12.07 16 13 C 0.08 1.21 8.04 59.85 0.48 1.69 16 14 C 0.54 10.80 6.69 -12.30 -0.08 10.72 16 15 O -0.54 -12.47 14.84 5.33 0.08 -12.39 16 16 C -0.04 -0.66 4.92 -104.34 -0.51 -1.17 16 17 C -0.15 -1.87 7.90 -38.96 -0.31 -2.18 16 18 C 0.14 1.51 11.14 -17.53 -0.20 1.32 16 19 N -0.47 -6.24 10.30 -11.01 -0.11 -6.36 16 20 C 0.14 1.97 6.61 -84.87 -0.56 1.41 16 21 C -0.09 -1.14 9.72 -39.40 -0.38 -1.52 16 22 C -0.01 -0.12 6.27 -39.86 -0.25 -0.37 16 23 Cl -0.07 -0.71 28.91 -51.86 -1.50 -2.21 16 24 C -0.12 -1.53 9.73 -39.85 -0.39 -1.92 16 25 C -0.06 -0.95 9.22 -39.60 -0.37 -1.32 16 26 C -0.07 -1.14 5.76 -106.51 -0.61 -1.76 16 27 H 0.01 0.27 8.14 -51.93 -0.42 -0.16 16 28 H 0.10 2.40 6.07 -51.93 -0.32 2.09 16 29 H 0.03 0.66 7.67 -51.93 -0.40 0.26 16 30 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 31 H 0.05 0.62 7.15 -51.93 -0.37 0.25 16 32 H 0.05 0.76 6.29 -51.93 -0.33 0.43 16 33 H 0.09 1.46 7.10 -51.93 -0.37 1.09 16 34 H 0.15 1.54 6.44 -52.48 -0.34 1.20 16 35 H 0.17 1.17 8.06 -52.49 -0.42 0.74 16 36 H 0.15 1.58 8.06 -52.48 -0.42 1.15 16 37 H 0.14 1.54 8.06 -52.49 -0.42 1.12 16 38 H 0.15 2.64 6.34 -52.48 -0.33 2.31 16 LS Contribution 331.87 15.07 5.00 5.00 Total: -1.00 -29.66 331.87 -8.83 -38.49 By element: Atomic # 1 Polarization: 6.04 SS G_CDS: -4.02 Total: 2.01 kcal Atomic # 6 Polarization: -0.91 SS G_CDS: -3.39 Total: -4.30 kcal Atomic # 7 Polarization: -41.93 SS G_CDS: 0.03 Total: -41.90 kcal Atomic # 8 Polarization: -12.47 SS G_CDS: 0.08 Total: -12.39 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.02 Total: 15.29 kcal Atomic # 17 Polarization: -0.71 SS G_CDS: -1.50 Total: -2.21 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -29.66 -8.83 -38.49 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931940208.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.276 kcal (2) G-P(sol) polarization free energy of solvation -29.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.495 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds