Wall clock time and date at job start Tue Mar 31 2020 11:31:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47372 * 2 1 4 4 H 1.08993 * 109.47130 * 304.44283 * 3 2 1 5 5 C 1.50699 * 109.47241 * 184.44093 * 3 2 1 6 6 H 1.08007 * 119.99795 * 245.09157 * 5 3 2 7 7 C 1.37877 * 119.99843 * 65.08588 * 5 3 2 8 8 N 1.31513 * 120.00250 * 355.83136 * 7 5 3 9 9 Si 1.86803 * 119.99789 * 175.82686 * 7 5 3 10 10 H 1.48501 * 109.47178 * 94.99813 * 9 7 5 11 11 H 1.48496 * 109.47003 * 215.00129 * 9 7 5 12 12 H 1.48507 * 109.47099 * 335.00006 * 9 7 5 13 13 N 1.46505 * 109.47036 * 64.44078 * 3 2 1 14 14 C 1.34774 * 119.99949 * 275.00115 * 13 3 2 15 15 O 1.21545 * 120.00201 * 359.97438 * 14 13 3 16 16 C 1.47909 * 119.99914 * 180.02562 * 14 13 3 17 17 C 1.38904 * 121.11077 * 5.58924 * 16 14 13 18 18 C 1.39255 * 119.58448 * 180.02562 * 17 16 14 19 19 N 1.30998 * 121.88272 * 359.97438 * 18 17 16 20 20 C 1.33546 * 121.82441 * 0.02562 * 19 18 17 21 21 C 1.40685 * 120.95571 * 180.02562 * 20 19 18 22 22 C 1.36178 * 119.73135 * 179.20245 * 21 20 19 23 23 Cl 1.73599 * 119.48676 * 180.25830 * 22 21 20 24 24 C 1.39481 * 121.02321 * 0.73398 * 22 21 20 25 25 C 1.36210 * 120.82851 * 359.52282 * 24 22 21 26 26 C 1.40129 * 119.65756 * 359.97438 * 25 24 22 27 27 H 1.08996 * 109.47269 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47010 * 59.99952 * 1 2 3 29 29 H 1.09003 * 109.46887 * 300.00475 * 1 2 3 30 30 H 1.09000 * 109.47010 * 120.00047 * 2 1 3 31 31 H 1.09003 * 109.46887 * 239.99525 * 2 1 3 32 32 H 0.96994 * 119.99916 * 179.97438 * 8 7 5 33 33 H 0.97003 * 119.99832 * 94.99873 * 13 3 2 34 34 H 1.08000 * 120.20817 * 359.97438 * 17 16 14 35 35 H 1.07997 * 119.05424 * 179.97438 * 18 17 16 36 36 H 1.08001 * 120.13142 * 359.96055 * 21 20 19 37 37 H 1.08006 * 119.58087 * 179.50441 * 24 22 21 38 38 H 1.07996 * 120.17601 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6133 1.9787 -0.8474 5 6 3.5431 1.4438 -0.1100 6 1 4.1439 1.8163 0.7066 7 6 4.1510 0.9696 -1.2530 8 7 3.4245 0.4406 -2.2132 9 14 6.0067 1.0785 -1.4378 10 1 6.6232 -0.2013 -1.0048 11 1 6.3483 1.3364 -2.8597 12 1 6.5238 2.1869 -0.5955 13 7 1.6410 2.1015 1.2461 14 6 0.4228 2.6688 1.3482 15 8 -0.3447 2.6340 0.4063 16 6 0.0201 3.3347 2.6060 17 6 0.9174 3.4902 3.6549 18 6 0.5042 4.1216 4.8252 19 7 -0.7146 4.5789 4.9715 20 6 -1.6302 4.4648 4.0060 21 6 -2.9339 4.9631 4.1824 22 6 -3.8431 4.8477 3.1752 23 17 -5.4481 5.4708 3.3973 24 6 -3.5077 4.2279 1.9715 25 6 -2.2565 3.7294 1.7680 26 6 -1.2930 3.8402 2.7794 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 0.5139 0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 3.8522 0.1074 -3.0175 33 1 2.2537 2.1295 1.9977 34 1 1.9290 3.1230 3.5636 35 1 1.2088 4.2376 5.6355 36 1 -3.2090 5.4461 5.1084 37 1 -4.2494 4.1420 1.1912 38 1 -2.0083 3.2511 0.8320 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000935399507.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:31:35 Heat of formation + Delta-G solvation = 9.544658 kcal Electronic energy + Delta-G solvation = -23667.761452 eV Core-core repulsion = 20114.872684 eV Total energy + Delta-G solvation = -3552.888768 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.088 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.14026 -39.04486 -37.65117 -36.28749 -35.31132 -33.52863 -32.51448 -31.17003 -30.59067 -29.90120 -27.19973 -25.02829 -23.74376 -23.36144 -22.57902 -20.69898 -19.71798 -18.40112 -17.80461 -17.46732 -16.34359 -15.69946 -15.38018 -15.10118 -14.96818 -14.75043 -14.34590 -14.28204 -13.98442 -13.50851 -13.12287 -12.96916 -12.78955 -12.24171 -12.05701 -11.74698 -11.64088 -11.34255 -11.25708 -11.19331 -11.06841 -10.91816 -10.45882 -10.42054 -10.29410 -10.08950 -9.74605 -9.16884 -9.00703 -8.85009 -8.66831 -8.42150 -8.02335 -6.23548 -4.33021 0.00244 0.57077 1.59151 1.86053 2.64847 3.17799 3.25777 3.27337 3.38214 3.64821 4.03556 4.13031 4.26299 4.54979 4.59869 4.76164 4.80968 4.87135 5.09289 5.10119 5.36715 5.54041 5.65628 5.72494 5.85058 6.01411 6.24974 6.27575 6.31891 6.42130 6.51633 6.61023 6.90080 7.04736 7.18508 7.26003 7.46295 7.57842 7.68319 7.73790 8.01294 8.40472 8.61449 8.85237 9.34286 10.82613 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.022830 B = 0.003144 C = 0.002887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1226.162858 B = 8903.722960 C = 9695.495193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.125 4.125 3 C 0.269 3.731 4 H 0.056 0.944 5 C -0.539 4.539 6 H 0.062 0.938 7 C 0.069 3.931 8 N -0.880 5.880 9 Si 0.901 3.099 10 H -0.280 1.280 11 H -0.284 1.284 12 H -0.273 1.273 13 N -0.690 5.690 14 C 0.543 3.457 15 O -0.533 6.533 16 C -0.053 4.053 17 C -0.145 4.145 18 C 0.135 3.865 19 N -0.466 5.466 20 C 0.134 3.866 21 C -0.095 4.095 22 C -0.010 4.010 23 Cl -0.069 7.069 24 C -0.123 4.123 25 C -0.074 4.074 26 C -0.070 4.070 27 H 0.025 0.975 28 H 0.052 0.948 29 H 0.037 0.963 30 H 0.033 0.967 31 H 0.096 0.904 32 H 0.266 0.734 33 H 0.390 0.610 34 H 0.147 0.853 35 H 0.167 0.833 36 H 0.145 0.855 37 H 0.138 0.862 38 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.459 6.465 12.010 16.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.164 4.164 3 C 0.168 3.832 4 H 0.073 0.927 5 C -0.577 4.577 6 H 0.080 0.920 7 C -0.135 4.135 8 N -0.516 5.516 9 Si 0.728 3.272 10 H -0.206 1.206 11 H -0.210 1.210 12 H -0.198 1.198 13 N -0.337 5.337 14 C 0.328 3.672 15 O -0.413 6.413 16 C -0.064 4.064 17 C -0.166 4.166 18 C -0.037 4.037 19 N -0.175 5.175 20 C 0.012 3.988 21 C -0.114 4.114 22 C -0.038 4.038 23 Cl -0.040 7.040 24 C -0.142 4.142 25 C -0.092 4.092 26 C -0.073 4.073 27 H 0.044 0.956 28 H 0.071 0.929 29 H 0.056 0.944 30 H 0.052 0.948 31 H 0.115 0.885 32 H 0.076 0.924 33 H 0.224 0.776 34 H 0.165 0.835 35 H 0.184 0.816 36 H 0.162 0.838 37 H 0.156 0.844 38 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -10.438 6.808 11.866 17.208 hybrid contribution 1.472 -0.309 -0.390 1.553 sum -8.967 6.499 11.476 15.948 Atomic orbital electron populations 1.21865 0.98275 0.98369 1.01177 1.21933 0.92668 0.99552 1.02238 1.18926 0.94419 0.89167 0.80666 0.92661 1.21170 0.90327 1.43680 1.02522 0.91998 1.24876 0.98722 0.94460 0.95457 1.69905 1.35547 1.38678 1.07506 0.86441 0.84662 0.78426 0.77644 1.20569 1.20966 1.19760 1.46526 1.13931 1.54317 1.18914 1.17932 0.83355 0.79708 0.86227 1.90551 1.51238 1.60331 1.39148 1.20798 0.93332 0.96844 0.95431 1.22538 1.00957 0.99372 0.93722 1.22928 0.92454 0.92064 0.96280 1.67761 1.02128 1.17253 1.30351 1.18592 0.93521 0.97164 0.89568 1.20533 0.90533 1.01073 0.99270 1.20688 0.86809 1.00296 0.96019 1.98373 1.22632 1.85810 1.97207 1.20968 0.97926 0.99217 0.96056 1.22228 0.90774 0.95436 1.00725 1.18776 0.94030 0.99176 0.95320 0.95609 0.92904 0.94434 0.94805 0.88550 0.92430 0.77649 0.83529 0.81602 0.83757 0.84378 0.80014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.88 8.50 37.16 0.32 -2.57 16 2 C -0.13 -2.83 5.48 -26.73 -0.15 -2.98 16 3 C 0.27 6.26 2.19 -69.08 -0.15 6.11 16 4 H 0.06 1.49 7.58 -51.93 -0.39 1.10 16 5 C -0.54 -13.32 8.67 -34.44 -0.30 -13.62 16 6 H 0.06 1.45 7.72 -52.48 -0.41 1.05 16 7 C 0.07 1.76 5.35 -17.82 -0.10 1.66 16 8 N -0.88 -23.55 11.52 55.43 0.64 -22.91 16 9 Si 0.90 19.72 29.54 -169.99 -5.02 14.69 16 10 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 11 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 12 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 13 N -0.69 -12.98 4.97 -55.86 -0.28 -13.26 16 14 C 0.54 9.91 6.29 -12.30 -0.08 9.83 16 15 O -0.53 -10.95 10.65 5.33 0.06 -10.90 16 16 C -0.05 -0.80 5.94 -104.34 -0.62 -1.42 16 17 C -0.14 -1.74 9.60 -38.96 -0.37 -2.11 16 18 C 0.13 1.48 11.14 -17.53 -0.20 1.28 16 19 N -0.47 -6.17 10.30 -11.01 -0.11 -6.28 16 20 C 0.13 1.88 6.61 -84.87 -0.56 1.32 16 21 C -0.09 -1.18 9.73 -39.40 -0.38 -1.56 16 22 C -0.01 -0.12 6.27 -39.86 -0.25 -0.37 16 23 Cl -0.07 -0.72 28.91 -51.86 -1.50 -2.22 16 24 C -0.12 -1.54 9.73 -39.85 -0.39 -1.93 16 25 C -0.07 -1.08 9.25 -39.60 -0.37 -1.45 16 26 C -0.07 -1.06 5.76 -106.51 -0.61 -1.68 16 27 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 28 H 0.05 1.15 7.81 -51.93 -0.41 0.75 16 29 H 0.04 0.75 5.66 -51.93 -0.29 0.45 16 30 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.10 2.44 6.24 -51.93 -0.32 2.11 16 32 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16 33 H 0.39 6.23 6.70 -40.82 -0.27 5.95 16 34 H 0.15 1.41 6.55 -52.49 -0.34 1.06 16 35 H 0.17 1.18 8.06 -52.49 -0.42 0.76 16 36 H 0.14 1.56 8.06 -52.49 -0.42 1.14 16 37 H 0.14 1.45 8.06 -52.48 -0.42 1.03 16 38 H 0.18 2.97 4.98 -52.49 -0.26 2.71 16 LS Contribution 329.71 15.07 4.97 4.97 Total: -1.00 -28.06 329.71 -9.40 -37.46 By element: Atomic # 1 Polarization: 11.86 SS G_CDS: -3.95 Total: 7.91 kcal Atomic # 6 Polarization: -5.27 SS G_CDS: -4.20 Total: -9.47 kcal Atomic # 7 Polarization: -42.69 SS G_CDS: 0.25 Total: -42.45 kcal Atomic # 8 Polarization: -10.95 SS G_CDS: 0.06 Total: -10.90 kcal Atomic # 14 Polarization: 19.72 SS G_CDS: -5.02 Total: 14.69 kcal Atomic # 17 Polarization: -0.72 SS G_CDS: -1.50 Total: -2.22 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -28.06 -9.40 -37.46 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935399507.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.006 kcal (2) G-P(sol) polarization free energy of solvation -28.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.461 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds