Wall clock time and date at job start Tue Mar 31 2020 11:31:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47372 * 2 1 4 4 H 1.08993 * 109.47130 * 304.44283 * 3 2 1 5 5 C 1.50699 * 109.47241 * 184.44093 * 3 2 1 6 6 H 1.08007 * 119.99795 * 245.09157 * 5 3 2 7 7 C 1.37877 * 119.99843 * 65.08588 * 5 3 2 8 8 N 1.31513 * 120.00250 * 355.83136 * 7 5 3 9 9 Si 1.86803 * 119.99789 * 175.82686 * 7 5 3 10 10 H 1.48501 * 109.47178 * 94.99813 * 9 7 5 11 11 H 1.48496 * 109.47003 * 215.00129 * 9 7 5 12 12 H 1.48507 * 109.47099 * 335.00006 * 9 7 5 13 13 N 1.46505 * 109.47036 * 64.44078 * 3 2 1 14 14 C 1.34774 * 119.99949 * 275.00115 * 13 3 2 15 15 O 1.21545 * 120.00201 * 359.97438 * 14 13 3 16 16 C 1.47909 * 119.99914 * 180.02562 * 14 13 3 17 17 C 1.38904 * 121.11077 * 5.58924 * 16 14 13 18 18 C 1.39255 * 119.58448 * 180.02562 * 17 16 14 19 19 N 1.30998 * 121.88272 * 359.97438 * 18 17 16 20 20 C 1.33546 * 121.82441 * 0.02562 * 19 18 17 21 21 C 1.40685 * 120.95571 * 180.02562 * 20 19 18 22 22 C 1.36178 * 119.73135 * 179.20245 * 21 20 19 23 23 Cl 1.73599 * 119.48676 * 180.25830 * 22 21 20 24 24 C 1.39481 * 121.02321 * 0.73398 * 22 21 20 25 25 C 1.36210 * 120.82851 * 359.52282 * 24 22 21 26 26 C 1.40129 * 119.65756 * 359.97438 * 25 24 22 27 27 H 1.08996 * 109.47269 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47010 * 59.99952 * 1 2 3 29 29 H 1.09003 * 109.46887 * 300.00475 * 1 2 3 30 30 H 1.09000 * 109.47010 * 120.00047 * 2 1 3 31 31 H 1.09003 * 109.46887 * 239.99525 * 2 1 3 32 32 H 0.96994 * 119.99916 * 179.97438 * 8 7 5 33 33 H 0.97003 * 119.99832 * 94.99873 * 13 3 2 34 34 H 1.08000 * 120.20817 * 359.97438 * 17 16 14 35 35 H 1.07997 * 119.05424 * 179.97438 * 18 17 16 36 36 H 1.08001 * 120.13142 * 359.96055 * 21 20 19 37 37 H 1.08006 * 119.58087 * 179.50441 * 24 22 21 38 38 H 1.07996 * 120.17601 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6133 1.9787 -0.8474 5 6 3.5431 1.4438 -0.1100 6 1 4.1439 1.8163 0.7066 7 6 4.1510 0.9696 -1.2530 8 7 3.4245 0.4406 -2.2132 9 14 6.0067 1.0785 -1.4378 10 1 6.6232 -0.2013 -1.0048 11 1 6.3483 1.3364 -2.8597 12 1 6.5238 2.1869 -0.5955 13 7 1.6410 2.1015 1.2461 14 6 0.4228 2.6688 1.3482 15 8 -0.3447 2.6340 0.4063 16 6 0.0201 3.3347 2.6060 17 6 0.9174 3.4902 3.6549 18 6 0.5042 4.1216 4.8252 19 7 -0.7146 4.5789 4.9715 20 6 -1.6302 4.4648 4.0060 21 6 -2.9339 4.9631 4.1824 22 6 -3.8431 4.8477 3.1752 23 17 -5.4481 5.4708 3.3973 24 6 -3.5077 4.2279 1.9715 25 6 -2.2565 3.7294 1.7680 26 6 -1.2930 3.8402 2.7794 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 0.5139 0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 3.8522 0.1074 -3.0175 33 1 2.2537 2.1295 1.9977 34 1 1.9290 3.1230 3.5636 35 1 1.2088 4.2376 5.6355 36 1 -3.2090 5.4461 5.1084 37 1 -4.2494 4.1420 1.1912 38 1 -2.0083 3.2511 0.8320 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000935399507.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:31:35 Heat of formation + Delta-G solvation = -6.176583 kcal Electronic energy + Delta-G solvation = -23668.443176 eV Core-core repulsion = 20114.872684 eV Total energy + Delta-G solvation = -3553.570492 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.088 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.21936 -40.46321 -38.60963 -37.28756 -36.94049 -34.74921 -34.20965 -32.81221 -31.57772 -31.02238 -28.98515 -26.25381 -24.99388 -24.71558 -23.87109 -22.12440 -21.39719 -19.63044 -19.00396 -18.53378 -17.91355 -17.21736 -16.68769 -16.48252 -16.32745 -15.92706 -15.64305 -15.44009 -15.12255 -14.65392 -14.49191 -14.45646 -13.96551 -13.76773 -13.51604 -13.14894 -13.06294 -12.88241 -12.68175 -12.65768 -12.23216 -12.18899 -12.11203 -12.04058 -11.62961 -11.42851 -11.27546 -11.03536 -10.58370 -10.30085 -9.82882 -9.75523 -9.37980 -8.16981 -6.32918 -1.04161 -0.41002 0.51559 0.93642 1.45690 1.47623 1.57301 1.66522 2.07368 2.22313 2.47796 2.96669 3.14536 3.22535 3.55301 3.58074 3.61734 3.79798 3.88962 4.14880 4.39149 4.46536 4.49469 4.55983 4.67347 4.73132 4.78707 4.85870 5.03146 5.05729 5.22019 5.26714 5.37730 5.42302 5.51988 5.57766 5.64630 5.77072 5.88697 6.12943 6.71093 6.74093 6.84113 7.30055 7.44938 8.89249 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.022830 B = 0.003144 C = 0.002887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1226.162858 B = 8903.722960 C = 9695.495193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.118 4.118 3 C 0.279 3.721 4 H 0.007 0.993 5 C -0.548 4.548 6 H 0.076 0.924 7 C 0.017 3.983 8 N -0.914 5.914 9 Si 0.967 3.033 10 H -0.274 1.274 11 H -0.290 1.290 12 H -0.262 1.262 13 N -0.688 5.688 14 C 0.543 3.457 15 O -0.563 6.563 16 C -0.082 4.082 17 C -0.122 4.122 18 C 0.141 3.859 19 N -0.472 5.472 20 C 0.118 3.882 21 C -0.089 4.089 22 C -0.014 4.014 23 Cl -0.052 7.052 24 C -0.112 4.112 25 C -0.099 4.099 26 C -0.083 4.083 27 H 0.044 0.956 28 H 0.030 0.970 29 H 0.042 0.958 30 H 0.043 0.957 31 H 0.067 0.933 32 H 0.264 0.736 33 H 0.405 0.595 34 H 0.173 0.827 35 H 0.213 0.787 36 H 0.162 0.838 37 H 0.154 0.846 38 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.756 7.281 14.836 18.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.157 4.157 3 C 0.176 3.824 4 H 0.025 0.975 5 C -0.586 4.586 6 H 0.094 0.906 7 C -0.183 4.183 8 N -0.552 5.552 9 Si 0.792 3.208 10 H -0.200 1.200 11 H -0.216 1.216 12 H -0.186 1.186 13 N -0.337 5.337 14 C 0.330 3.670 15 O -0.444 6.444 16 C -0.093 4.093 17 C -0.143 4.143 18 C -0.031 4.031 19 N -0.180 5.180 20 C -0.003 4.003 21 C -0.109 4.109 22 C -0.042 4.042 23 Cl -0.023 7.023 24 C -0.131 4.131 25 C -0.118 4.118 26 C -0.086 4.086 27 H 0.063 0.937 28 H 0.049 0.951 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.086 0.914 32 H 0.074 0.926 33 H 0.242 0.758 34 H 0.191 0.809 35 H 0.230 0.770 36 H 0.180 0.820 37 H 0.172 0.828 38 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -9.748 7.640 14.730 19.245 hybrid contribution 1.178 -0.505 -1.206 1.760 sum -8.570 7.135 13.524 17.529 Atomic orbital electron populations 1.21701 0.96958 0.99281 1.00342 1.21781 0.93751 0.99030 1.01186 1.18460 0.93742 0.89095 0.81071 0.97515 1.21553 0.91162 1.42992 1.02863 0.90639 1.25727 1.03047 0.94246 0.95298 1.70057 1.37300 1.39801 1.08018 0.85412 0.79447 0.78752 0.77214 1.19970 1.21570 1.18595 1.46197 1.14776 1.54681 1.18040 1.18383 0.82527 0.78988 0.87117 1.90556 1.52004 1.61172 1.40710 1.20511 0.94542 0.99238 0.95031 1.22915 1.01328 0.97301 0.92732 1.23667 0.92328 0.90280 0.96801 1.67846 1.02852 1.17399 1.29943 1.18765 0.94478 0.97677 0.89363 1.20755 0.89979 1.00262 0.99866 1.20685 0.87670 1.00234 0.95657 1.98379 1.21268 1.85505 1.97116 1.21116 0.97360 0.97886 0.96716 1.22019 0.92080 0.97350 1.00323 1.18891 0.94077 0.99673 0.95944 0.93674 0.95058 0.93921 0.93782 0.91435 0.92642 0.75845 0.80925 0.77015 0.82025 0.82844 0.82297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.33 8.50 71.98 0.61 -4.72 16 2 C -0.12 -5.49 5.48 30.59 0.17 -5.33 16 3 C 0.28 13.34 2.19 44.24 0.10 13.44 16 4 H 0.01 0.40 7.58 -2.39 -0.02 0.38 16 5 C -0.55 -27.14 8.67 25.60 0.22 -26.92 16 6 H 0.08 3.44 7.72 -2.91 -0.02 3.42 16 7 C 0.02 0.89 5.35 84.65 0.45 1.35 16 8 N -0.91 -50.43 11.52 21.45 0.25 -50.18 16 9 Si 0.97 40.32 29.54 68.60 2.03 42.34 16 10 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 11 H -0.29 -12.25 7.11 99.48 0.71 -11.55 16 12 H -0.26 -10.36 7.11 99.48 0.71 -9.65 16 13 N -0.69 -25.95 4.97 -448.93 -2.23 -28.18 16 14 C 0.54 20.22 6.29 86.81 0.55 20.77 16 15 O -0.56 -24.45 10.65 -3.86 -0.04 -24.49 16 16 C -0.08 -2.45 5.94 -19.68 -0.12 -2.56 16 17 C -0.12 -2.59 9.60 22.67 0.22 -2.37 16 18 C 0.14 2.57 11.14 85.06 0.95 3.52 16 19 N -0.47 -11.14 10.30 -188.75 -1.94 -13.08 16 20 C 0.12 3.16 6.61 40.34 0.27 3.42 16 21 C -0.09 -2.07 9.73 22.39 0.22 -1.86 16 22 C -0.01 -0.32 6.27 22.09 0.14 -0.18 16 23 Cl -0.05 -0.99 28.91 -2.72 -0.08 -1.07 16 24 C -0.11 -2.80 9.73 22.10 0.22 -2.58 16 25 C -0.10 -3.02 9.25 22.26 0.21 -2.81 16 26 C -0.08 -2.50 5.76 -21.09 -0.12 -2.62 16 27 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 28 H 0.03 1.43 7.81 -2.39 -0.02 1.41 16 29 H 0.04 1.74 5.66 -2.39 -0.01 1.73 16 30 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 31 H 0.07 3.54 6.24 -2.39 -0.01 3.53 16 32 H 0.26 13.92 8.31 -92.71 -0.77 13.15 16 33 H 0.41 12.38 6.70 -92.71 -0.62 11.76 16 34 H 0.17 2.66 6.55 -2.91 -0.02 2.65 16 35 H 0.21 1.83 8.06 -2.91 -0.02 1.81 16 36 H 0.16 3.10 8.06 -2.91 -0.02 3.08 16 37 H 0.15 3.18 8.06 -2.91 -0.02 3.16 16 38 H 0.16 5.59 4.98 -2.91 -0.01 5.58 16 Total: -1.00 -63.06 329.71 2.54 -60.52 By element: Atomic # 1 Polarization: 23.09 SS G_CDS: 0.50 Total: 23.59 kcal Atomic # 6 Polarization: -13.52 SS G_CDS: 4.07 Total: -9.45 kcal Atomic # 7 Polarization: -87.51 SS G_CDS: -3.93 Total: -91.44 kcal Atomic # 8 Polarization: -24.45 SS G_CDS: -0.04 Total: -24.49 kcal Atomic # 14 Polarization: 40.32 SS G_CDS: 2.03 Total: 42.34 kcal Atomic # 17 Polarization: -0.99 SS G_CDS: -0.08 Total: -1.07 kcal Total: -63.06 2.54 -60.52 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935399507.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.342 kcal (2) G-P(sol) polarization free energy of solvation -63.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds