Wall clock time and date at job start Tue Mar 31 2020 11:31:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52993 * 109.47366 * 2 1 4 4 H 1.09000 * 109.47573 * 55.00422 * 3 2 1 5 5 C 1.50699 * 109.47348 * 175.00186 * 3 2 1 6 6 H 1.08000 * 120.00142 * 119.99722 * 5 3 2 7 7 C 1.37881 * 119.99836 * 300.00178 * 5 3 2 8 8 N 1.31520 * 119.99824 * 179.97438 * 7 5 3 9 9 Si 1.86791 * 120.00074 * 359.97438 * 7 5 3 10 10 H 1.48506 * 109.47270 * 89.99862 * 9 7 5 11 11 H 1.48504 * 109.47358 * 210.00105 * 9 7 5 12 12 H 1.48501 * 109.47283 * 330.00170 * 9 7 5 13 13 N 1.46502 * 109.47333 * 294.99948 * 3 2 1 14 14 C 1.34776 * 119.99619 * 85.00202 * 13 3 2 15 15 O 1.21543 * 120.00195 * 359.97438 * 14 13 3 16 16 C 1.47905 * 119.99840 * 180.02562 * 14 13 3 17 17 C 1.38897 * 121.11175 * 354.13164 * 16 14 13 18 18 C 1.39259 * 119.58747 * 180.02562 * 17 16 14 19 19 N 1.31001 * 121.88199 * 359.94001 * 18 17 16 20 20 C 1.33547 * 121.82480 * 0.02562 * 19 18 17 21 21 C 1.40678 * 120.96027 * 180.02562 * 20 19 18 22 22 C 1.36171 * 119.73705 * 179.97438 * 21 20 19 23 23 Cl 1.73601 * 119.49007 * 179.97438 * 22 21 20 24 24 C 1.39481 * 121.02720 * 359.70949 * 22 21 20 25 25 C 1.36226 * 120.82146 * 0.57501 * 24 22 21 26 26 C 1.40125 * 119.65397 * 359.45259 * 25 24 22 27 27 H 1.09000 * 109.46612 * 299.99854 * 1 2 3 28 28 H 1.08997 * 109.47283 * 59.99529 * 1 2 3 29 29 H 1.09000 * 109.47476 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.47015 * 240.00150 * 2 1 3 31 31 H 1.08997 * 109.47283 * 120.00471 * 2 1 3 32 32 H 0.96995 * 119.99633 * 179.97438 * 8 7 5 33 33 H 0.96998 * 120.00352 * 264.99676 * 13 3 2 34 34 H 1.08003 * 120.20746 * 0.02562 * 17 16 14 35 35 H 1.07997 * 119.06280 * 179.97438 * 18 17 16 36 36 H 1.08001 * 120.13153 * 359.95360 * 21 20 19 37 37 H 1.08002 * 119.59287 * 180.28333 * 24 22 21 38 38 H 1.07992 * 120.16937 * 179.72584 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5419 1.4442 0.1238 6 1 4.1472 1.8887 -0.6524 7 6 4.1433 0.8782 1.2279 8 7 5.4541 0.8794 1.3357 9 14 3.0964 0.1099 2.5706 10 1 2.8744 -1.3262 2.2645 11 1 3.7942 0.2358 3.8754 12 1 1.7882 0.8093 2.6395 13 7 1.6525 2.0975 -1.2518 14 6 0.4352 2.6645 -1.3669 15 8 -0.3411 2.6319 -0.4323 16 6 0.0438 3.3253 -2.6308 17 6 0.9518 3.4816 -3.6702 18 6 0.5493 4.1092 -4.8464 19 7 -0.6699 4.5607 -5.0075 20 6 -1.5957 4.4448 -4.0520 21 6 -2.8999 4.9357 -4.2447 22 6 -3.8245 4.8038 -3.2538 23 17 -5.4318 5.4126 -3.4982 24 6 -3.5019 4.1822 -2.0476 25 6 -2.2475 3.7003 -1.8243 26 6 -1.2712 3.8195 -2.8224 27 1 -0.3632 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8901 31 1 1.8933 -0.5139 0.8899 32 1 5.8771 0.4815 2.1126 33 1 2.2720 2.1232 -1.9978 34 1 1.9638 3.1188 -3.5668 35 1 1.2624 4.2267 -5.6489 36 1 -3.1666 5.4157 -5.1747 37 1 -4.2547 4.0860 -1.2791 38 1 -2.0080 3.2248 -0.8847 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000935399508.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:31:38 Heat of formation + Delta-G solvation = 18.648864 kcal Electronic energy + Delta-G solvation = -23763.303749 eV Core-core repulsion = 20210.809769 eV Total energy + Delta-G solvation = -3552.493980 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.088 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.22343 -39.24473 -37.71212 -36.35013 -35.60033 -33.63172 -32.53162 -31.67884 -30.65323 -30.01919 -27.69210 -25.14836 -23.80628 -23.22693 -22.56774 -21.01484 -20.03957 -18.52366 -17.88815 -17.52263 -16.61246 -15.89577 -15.55866 -15.35724 -15.01919 -14.87648 -14.42030 -14.34619 -14.02309 -13.57331 -13.41136 -13.05778 -12.98313 -12.51678 -12.14814 -12.09240 -11.90075 -11.75765 -11.32330 -11.25631 -11.18728 -11.03620 -10.75229 -10.46931 -10.21245 -10.03528 -9.61101 -9.36948 -9.13686 -8.90963 -8.87616 -8.50918 -8.26151 -6.31036 -4.34985 -0.07074 0.51189 1.51536 1.81075 2.58504 3.15695 3.24061 3.28761 3.31517 3.48373 3.95235 4.07767 4.22096 4.48425 4.53064 4.67125 4.72273 4.79636 5.02242 5.03192 5.30584 5.44995 5.58237 5.66170 5.78254 5.84137 5.90882 5.95048 6.04300 6.17682 6.35316 6.49949 6.53332 6.58974 6.70518 6.80820 7.06542 7.14310 7.35018 7.62875 7.93724 8.31763 8.55625 8.69215 9.28314 10.80776 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.022198 B = 0.003357 C = 0.003023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.045903 B = 8337.611582 C = 9261.447957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.140 4.140 3 C 0.242 3.758 4 H 0.054 0.946 5 C -0.540 4.540 6 H 0.081 0.919 7 C 0.081 3.919 8 N -0.889 5.889 9 Si 0.883 3.117 10 H -0.275 1.275 11 H -0.293 1.293 12 H -0.260 1.260 13 N -0.683 5.683 14 C 0.546 3.454 15 O -0.534 6.534 16 C -0.056 4.056 17 C -0.141 4.141 18 C 0.135 3.865 19 N -0.464 5.464 20 C 0.133 3.867 21 C -0.093 4.093 22 C -0.010 4.010 23 Cl -0.068 7.068 24 C -0.122 4.122 25 C -0.076 4.076 26 C -0.069 4.069 27 H 0.054 0.946 28 H 0.050 0.950 29 H 0.033 0.967 30 H 0.060 0.940 31 H 0.057 0.943 32 H 0.269 0.731 33 H 0.396 0.604 34 H 0.149 0.851 35 H 0.168 0.832 36 H 0.145 0.855 37 H 0.138 0.862 38 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.415 5.605 -10.958 18.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.178 4.178 3 C 0.139 3.861 4 H 0.071 0.929 5 C -0.578 4.578 6 H 0.099 0.901 7 C -0.124 4.124 8 N -0.525 5.525 9 Si 0.712 3.288 10 H -0.201 1.201 11 H -0.220 1.220 12 H -0.184 1.184 13 N -0.330 5.330 14 C 0.331 3.669 15 O -0.414 6.414 16 C -0.067 4.067 17 C -0.162 4.162 18 C -0.037 4.037 19 N -0.173 5.173 20 C 0.011 3.989 21 C -0.112 4.112 22 C -0.039 4.039 23 Cl -0.039 7.039 24 C -0.140 4.140 25 C -0.094 4.094 26 C -0.072 4.072 27 H 0.073 0.927 28 H 0.069 0.931 29 H 0.053 0.947 30 H 0.079 0.921 31 H 0.075 0.925 32 H 0.079 0.921 33 H 0.231 0.769 34 H 0.166 0.834 35 H 0.185 0.815 36 H 0.163 0.837 37 H 0.156 0.844 38 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -15.240 5.987 -10.918 19.680 hybrid contribution 0.139 -0.813 1.003 1.299 sum -15.101 5.174 -9.915 18.792 Atomic orbital electron populations 1.21893 0.96898 0.99330 1.02165 1.22300 0.94398 0.99702 1.01414 1.19266 0.95969 0.88618 0.82224 0.92873 1.20995 0.88328 1.40328 1.08106 0.90090 1.24823 0.94886 0.95022 0.97643 1.69858 1.08695 1.44124 1.29833 0.86910 0.80941 0.79990 0.80960 1.20148 1.22043 1.18413 1.46165 1.14076 1.54422 1.18370 1.17955 0.83125 0.79431 0.86343 1.90550 1.50724 1.60277 1.39875 1.20671 0.93406 0.97388 0.95231 1.22574 1.00951 0.98978 0.93680 1.22958 0.92537 0.92004 0.96178 1.67772 1.01879 1.17040 1.30587 1.18589 0.93522 0.97144 0.89596 1.20544 0.90327 1.00946 0.99423 1.20683 0.86749 1.00378 0.96082 1.98376 1.22366 1.86307 1.96883 1.20970 0.97939 0.99183 0.95928 1.22190 0.90729 0.95724 1.00730 1.18758 0.93904 0.99174 0.95356 0.92686 0.93096 0.94745 0.92137 0.92487 0.92133 0.76866 0.83354 0.81456 0.83691 0.84383 0.80129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.70 8.51 37.16 0.32 -2.38 16 2 C -0.14 -2.88 5.11 -26.74 -0.14 -3.02 16 3 C 0.24 5.29 1.83 -69.09 -0.13 5.16 16 4 H 0.05 1.28 6.63 -51.93 -0.34 0.94 16 5 C -0.54 -13.69 9.31 -34.44 -0.32 -14.01 16 6 H 0.08 2.16 7.98 -52.49 -0.42 1.74 16 7 C 0.08 2.16 5.45 -17.82 -0.10 2.06 16 8 N -0.89 -25.32 13.96 55.43 0.77 -24.55 16 9 Si 0.88 20.72 24.41 -169.99 -4.15 16.57 16 10 H -0.27 -6.26 6.83 56.52 0.39 -5.88 16 11 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 12 H -0.26 -5.98 6.53 56.52 0.37 -5.62 16 13 N -0.68 -12.21 4.98 -55.86 -0.28 -12.49 16 14 C 0.55 9.36 6.32 -12.30 -0.08 9.28 16 15 O -0.53 -10.21 10.66 5.33 0.06 -10.16 16 16 C -0.06 -0.80 5.94 -104.34 -0.62 -1.42 16 17 C -0.14 -1.61 9.59 -38.96 -0.37 -1.99 16 18 C 0.14 1.42 11.14 -17.53 -0.20 1.23 16 19 N -0.46 -5.91 10.30 -11.01 -0.11 -6.03 16 20 C 0.13 1.80 6.61 -84.87 -0.56 1.24 16 21 C -0.09 -1.11 9.72 -39.40 -0.38 -1.49 16 22 C -0.01 -0.12 6.27 -39.86 -0.25 -0.37 16 23 Cl -0.07 -0.68 28.91 -51.86 -1.50 -2.18 16 24 C -0.12 -1.44 9.73 -39.84 -0.39 -1.82 16 25 C -0.08 -1.05 9.25 -39.60 -0.37 -1.41 16 26 C -0.07 -0.99 5.76 -106.51 -0.61 -1.61 16 27 H 0.05 1.07 7.84 -51.93 -0.41 0.66 16 28 H 0.05 0.92 5.64 -51.93 -0.29 0.62 16 29 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 31 H 0.06 1.25 3.22 -51.93 -0.17 1.08 16 32 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 33 H 0.40 6.12 6.71 -40.82 -0.27 5.85 16 34 H 0.15 1.36 6.55 -52.48 -0.34 1.02 16 35 H 0.17 1.14 8.06 -52.49 -0.42 0.72 16 36 H 0.15 1.50 8.06 -52.49 -0.42 1.08 16 37 H 0.14 1.35 8.06 -52.49 -0.42 0.93 16 38 H 0.18 2.75 4.98 -52.49 -0.26 2.49 16 LS Contribution 322.55 15.07 4.86 4.86 Total: -1.00 -29.29 322.55 -8.35 -37.64 By element: Atomic # 1 Polarization: 10.69 SS G_CDS: -3.81 Total: 6.88 kcal Atomic # 6 Polarization: -6.36 SS G_CDS: -4.19 Total: -10.55 kcal Atomic # 7 Polarization: -43.45 SS G_CDS: 0.38 Total: -43.06 kcal Atomic # 8 Polarization: -10.21 SS G_CDS: 0.06 Total: -10.16 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -4.15 Total: 16.57 kcal Atomic # 17 Polarization: -0.68 SS G_CDS: -1.50 Total: -2.18 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -29.29 -8.35 -37.64 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935399508.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.285 kcal (2) G-P(sol) polarization free energy of solvation -29.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.636 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds