Wall clock time and date at job start Tue Mar 31 2020 11:31:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52993 * 109.47366 * 2 1 4 4 H 1.09000 * 109.47573 * 55.00422 * 3 2 1 5 5 C 1.50699 * 109.47348 * 175.00186 * 3 2 1 6 6 H 1.08000 * 120.00142 * 119.99722 * 5 3 2 7 7 C 1.37881 * 119.99836 * 300.00178 * 5 3 2 8 8 N 1.31520 * 119.99824 * 179.97438 * 7 5 3 9 9 Si 1.86791 * 120.00074 * 359.97438 * 7 5 3 10 10 H 1.48506 * 109.47270 * 89.99862 * 9 7 5 11 11 H 1.48504 * 109.47358 * 210.00105 * 9 7 5 12 12 H 1.48501 * 109.47283 * 330.00170 * 9 7 5 13 13 N 1.46502 * 109.47333 * 294.99948 * 3 2 1 14 14 C 1.34776 * 119.99619 * 85.00202 * 13 3 2 15 15 O 1.21543 * 120.00195 * 359.97438 * 14 13 3 16 16 C 1.47905 * 119.99840 * 180.02562 * 14 13 3 17 17 C 1.38897 * 121.11175 * 354.13164 * 16 14 13 18 18 C 1.39259 * 119.58747 * 180.02562 * 17 16 14 19 19 N 1.31001 * 121.88199 * 359.94001 * 18 17 16 20 20 C 1.33547 * 121.82480 * 0.02562 * 19 18 17 21 21 C 1.40678 * 120.96027 * 180.02562 * 20 19 18 22 22 C 1.36171 * 119.73705 * 179.97438 * 21 20 19 23 23 Cl 1.73601 * 119.49007 * 179.97438 * 22 21 20 24 24 C 1.39481 * 121.02720 * 359.70949 * 22 21 20 25 25 C 1.36226 * 120.82146 * 0.57501 * 24 22 21 26 26 C 1.40125 * 119.65397 * 359.45259 * 25 24 22 27 27 H 1.09000 * 109.46612 * 299.99854 * 1 2 3 28 28 H 1.08997 * 109.47283 * 59.99529 * 1 2 3 29 29 H 1.09000 * 109.47476 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.47015 * 240.00150 * 2 1 3 31 31 H 1.08997 * 109.47283 * 120.00471 * 2 1 3 32 32 H 0.96995 * 119.99633 * 179.97438 * 8 7 5 33 33 H 0.96998 * 120.00352 * 264.99676 * 13 3 2 34 34 H 1.08003 * 120.20746 * 0.02562 * 17 16 14 35 35 H 1.07997 * 119.06280 * 179.97438 * 18 17 16 36 36 H 1.08001 * 120.13153 * 359.95360 * 21 20 19 37 37 H 1.08002 * 119.59287 * 180.28333 * 24 22 21 38 38 H 1.07992 * 120.16937 * 179.72584 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5419 1.4442 0.1238 6 1 4.1472 1.8887 -0.6524 7 6 4.1433 0.8782 1.2279 8 7 5.4541 0.8794 1.3357 9 14 3.0964 0.1099 2.5706 10 1 2.8744 -1.3262 2.2645 11 1 3.7942 0.2358 3.8754 12 1 1.7882 0.8093 2.6395 13 7 1.6525 2.0975 -1.2518 14 6 0.4352 2.6645 -1.3669 15 8 -0.3411 2.6319 -0.4323 16 6 0.0438 3.3253 -2.6308 17 6 0.9518 3.4816 -3.6702 18 6 0.5493 4.1092 -4.8464 19 7 -0.6699 4.5607 -5.0075 20 6 -1.5957 4.4448 -4.0520 21 6 -2.8999 4.9357 -4.2447 22 6 -3.8245 4.8038 -3.2538 23 17 -5.4318 5.4126 -3.4982 24 6 -3.5019 4.1822 -2.0476 25 6 -2.2475 3.7003 -1.8243 26 6 -1.2712 3.8195 -2.8224 27 1 -0.3632 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8901 31 1 1.8933 -0.5139 0.8899 32 1 5.8771 0.4815 2.1126 33 1 2.2720 2.1232 -1.9978 34 1 1.9638 3.1188 -3.5668 35 1 1.2624 4.2267 -5.6489 36 1 -3.1666 5.4157 -5.1747 37 1 -4.2547 4.0860 -1.2791 38 1 -2.0080 3.2248 -0.8847 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000935399508.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:31:38 Heat of formation + Delta-G solvation = 0.608869 kcal Electronic energy + Delta-G solvation = -23764.086021 eV Core-core repulsion = 20210.809769 eV Total energy + Delta-G solvation = -3553.276253 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.088 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.25207 -40.57672 -38.61738 -37.37761 -37.05696 -34.78148 -34.34618 -33.17647 -31.58533 -31.05723 -29.43247 -26.28924 -24.77100 -24.66684 -23.92613 -22.37938 -21.55270 -19.75128 -19.04179 -18.54375 -18.21768 -17.42623 -16.82699 -16.60576 -16.28288 -15.95188 -15.64287 -15.53408 -15.14720 -15.01122 -14.54065 -14.50829 -14.10540 -13.89198 -13.74451 -13.62111 -13.07707 -12.96236 -12.78390 -12.68001 -12.42082 -12.23530 -12.07511 -11.86391 -11.51615 -11.40429 -11.26500 -11.21908 -10.86413 -10.34776 -9.91862 -9.81709 -9.40046 -8.37855 -6.43726 -1.05991 -0.41763 0.49799 0.93834 1.28305 1.37050 1.45372 1.64876 2.01310 2.15365 2.26348 2.94592 2.98869 3.21399 3.50636 3.54472 3.58622 3.78775 3.88452 4.14084 4.22722 4.31525 4.37730 4.39114 4.50503 4.66228 4.75925 4.83097 4.84680 5.00395 5.04452 5.10596 5.19175 5.23049 5.35675 5.41219 5.51752 5.53666 5.65446 6.11338 6.57527 6.70105 6.73573 7.15323 7.30948 8.76985 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.022198 B = 0.003357 C = 0.003023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.045903 B = 8337.611582 C = 9261.447957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.139 4.139 3 C 0.251 3.749 4 H 0.029 0.971 5 C -0.534 4.534 6 H 0.060 0.940 7 C 0.032 3.968 8 N -0.932 5.932 9 Si 0.933 3.067 10 H -0.261 1.261 11 H -0.296 1.296 12 H -0.257 1.257 13 N -0.684 5.684 14 C 0.549 3.451 15 O -0.557 6.557 16 C -0.082 4.082 17 C -0.122 4.122 18 C 0.140 3.860 19 N -0.471 5.471 20 C 0.118 3.882 21 C -0.090 4.090 22 C -0.014 4.014 23 Cl -0.052 7.052 24 C -0.111 4.111 25 C -0.098 4.098 26 C -0.081 4.081 27 H 0.041 0.959 28 H 0.052 0.948 29 H 0.057 0.943 30 H 0.069 0.931 31 H 0.045 0.955 32 H 0.270 0.730 33 H 0.408 0.592 34 H 0.171 0.829 35 H 0.211 0.789 36 H 0.161 0.839 37 H 0.155 0.845 38 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.825 5.709 -12.622 21.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.177 4.177 3 C 0.146 3.854 4 H 0.047 0.953 5 C -0.572 4.572 6 H 0.079 0.921 7 C -0.169 4.169 8 N -0.571 5.571 9 Si 0.761 3.239 10 H -0.186 1.186 11 H -0.224 1.224 12 H -0.181 1.181 13 N -0.333 5.333 14 C 0.336 3.664 15 O -0.438 6.438 16 C -0.093 4.093 17 C -0.143 4.143 18 C -0.032 4.032 19 N -0.180 5.180 20 C -0.003 4.003 21 C -0.109 4.109 22 C -0.043 4.043 23 Cl -0.023 7.023 24 C -0.130 4.130 25 C -0.116 4.116 26 C -0.084 4.084 27 H 0.061 0.939 28 H 0.071 0.929 29 H 0.076 0.924 30 H 0.088 0.912 31 H 0.063 0.937 32 H 0.079 0.921 33 H 0.245 0.755 34 H 0.189 0.811 35 H 0.228 0.772 36 H 0.178 0.822 37 H 0.173 0.827 38 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -16.678 6.098 -12.610 21.780 hybrid contribution 0.555 -0.740 1.399 1.677 sum -16.123 5.359 -11.211 20.356 Atomic orbital electron populations 1.21781 0.95178 1.00676 1.01669 1.22221 0.95868 0.98345 1.01257 1.18868 0.93443 0.89700 0.83356 0.95290 1.21258 0.90160 1.38670 1.07080 0.92142 1.25514 0.95662 0.95865 0.99812 1.69968 1.10276 1.46040 1.30828 0.86086 0.79485 0.79997 0.78380 1.18643 1.22372 1.18119 1.45916 1.14977 1.54940 1.17492 1.18307 0.82249 0.78680 0.87157 1.90551 1.51275 1.60901 1.41102 1.20428 0.94483 0.99536 0.94852 1.22912 1.01270 0.97173 0.92901 1.23641 0.92460 0.90400 0.96673 1.67848 1.02574 1.17249 1.30344 1.18773 0.94412 0.97679 0.89481 1.20748 0.89847 1.00313 1.00023 1.20699 0.87501 1.00266 0.95793 1.98382 1.21113 1.86041 1.96803 1.21138 0.97516 0.97841 0.96472 1.22027 0.91812 0.97411 1.00374 1.18873 0.93974 0.99620 0.95944 0.93949 0.92875 0.92395 0.91190 0.93654 0.92092 0.75522 0.81146 0.77246 0.82176 0.82688 0.81888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.86 8.51 71.98 0.61 -4.24 16 2 C -0.14 -5.56 5.11 30.59 0.16 -5.41 16 3 C 0.25 10.95 1.83 44.24 0.08 11.03 16 4 H 0.03 1.42 6.63 -2.39 -0.02 1.41 16 5 C -0.53 -27.36 9.31 25.60 0.24 -27.12 16 6 H 0.06 3.28 7.98 -2.91 -0.02 3.25 16 7 C 0.03 1.71 5.45 84.65 0.46 2.17 16 8 N -0.93 -54.10 13.96 21.45 0.30 -53.80 16 9 Si 0.93 42.89 24.41 68.60 1.67 44.57 16 10 H -0.26 -11.30 6.83 99.48 0.68 -10.62 16 11 H -0.30 -13.64 7.11 99.48 0.71 -12.94 16 12 H -0.26 -11.58 6.53 99.48 0.65 -10.93 16 13 N -0.68 -24.19 4.98 -448.93 -2.23 -26.43 16 14 C 0.55 18.70 6.32 86.80 0.55 19.25 16 15 O -0.56 -21.59 10.66 -3.85 -0.04 -21.64 16 16 C -0.08 -2.28 5.94 -19.68 -0.12 -2.40 16 17 C -0.12 -2.50 9.59 22.67 0.22 -2.29 16 18 C 0.14 2.51 11.14 85.06 0.95 3.45 16 19 N -0.47 -10.84 10.30 -188.75 -1.94 -12.78 16 20 C 0.12 3.00 6.61 40.34 0.27 3.26 16 21 C -0.09 -1.99 9.72 22.38 0.22 -1.77 16 22 C -0.01 -0.30 6.27 22.09 0.14 -0.16 16 23 Cl -0.05 -0.94 28.91 -2.72 -0.08 -1.02 16 24 C -0.11 -2.53 9.73 22.10 0.22 -2.31 16 25 C -0.10 -2.71 9.25 22.26 0.21 -2.51 16 26 C -0.08 -2.28 5.76 -21.09 -0.12 -2.40 16 27 H 0.04 1.61 7.84 -2.39 -0.02 1.59 16 28 H 0.05 1.86 5.64 -2.39 -0.01 1.85 16 29 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 30 H 0.07 2.65 8.14 -2.38 -0.02 2.63 16 31 H 0.05 1.93 3.22 -2.39 -0.01 1.92 16 32 H 0.27 14.77 8.31 -92.71 -0.77 14.00 16 33 H 0.41 12.22 6.71 -92.71 -0.62 11.60 16 34 H 0.17 2.65 6.55 -2.91 -0.02 2.63 16 35 H 0.21 1.87 8.06 -2.91 -0.02 1.85 16 36 H 0.16 2.95 8.06 -2.91 -0.02 2.93 16 37 H 0.16 2.85 8.06 -2.91 -0.02 2.83 16 38 H 0.16 5.12 4.98 -2.92 -0.01 5.10 16 Total: -1.00 -63.86 322.55 2.17 -61.70 By element: Atomic # 1 Polarization: 20.44 SS G_CDS: 0.42 Total: 20.86 kcal Atomic # 6 Polarization: -15.53 SS G_CDS: 4.07 Total: -11.46 kcal Atomic # 7 Polarization: -89.13 SS G_CDS: -3.88 Total: -93.01 kcal Atomic # 8 Polarization: -21.59 SS G_CDS: -0.04 Total: -21.64 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 1.67 Total: 44.57 kcal Atomic # 17 Polarization: -0.94 SS G_CDS: -0.08 Total: -1.02 kcal Total: -63.86 2.17 -61.70 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935399508.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.306 kcal (2) G-P(sol) polarization free energy of solvation -63.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.697 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds