Wall clock time and date at job start Tue Mar 31 2020 11:59:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.47188 * 2 1 4 4 N 1.46494 * 109.46978 * 120.00161 * 2 1 3 5 5 C 1.39786 * 120.00177 * 274.99762 * 4 2 1 6 6 C 1.38955 * 120.00201 * 359.73251 * 5 4 2 7 7 C 1.38011 * 119.98863 * 179.72262 * 6 5 4 8 8 C 1.38897 * 120.00987 * 0.54336 * 7 6 5 9 9 O 1.35798 * 119.99679 * 179.70572 * 8 7 6 10 10 C 1.34816 * 116.99997 * 174.48327 * 9 8 7 11 11 H 1.07998 * 119.99585 * 5.05686 * 10 9 8 12 12 C 1.38612 * 120.00055 * 185.05487 * 10 9 8 13 13 N 1.31592 * 120.00093 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 120.00069 * 179.97438 * 12 10 9 15 15 H 1.48506 * 109.47084 * 60.00437 * 14 12 10 16 16 H 1.48504 * 109.46966 * 179.97438 * 14 12 10 17 17 H 1.48497 * 109.47388 * 300.00223 * 14 12 10 18 18 C 1.38907 * 120.00925 * 359.73054 * 8 7 6 19 19 C 1.38010 * 120.00503 * 359.97438 * 18 8 7 20 20 C 1.50702 * 109.47111 * 240.00281 * 2 1 3 21 21 C 1.38704 * 120.40271 * 99.99747 * 20 2 1 22 22 C 1.38568 * 118.43460 * 180.02562 * 21 20 2 23 23 C 1.38388 * 119.15053 * 0.02562 * 22 21 20 24 24 Cl 1.73599 * 119.63556 * 179.97438 * 23 22 21 25 25 N 1.31950 * 120.73023 * 0.25263 * 23 22 21 26 26 C 1.31903 * 121.70807 * 359.48168 * 25 23 22 27 27 H 1.09000 * 109.47188 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47516 * 299.99765 * 1 2 3 29 29 H 1.09001 * 109.47327 * 59.99792 * 1 2 3 30 30 H 0.97001 * 120.00060 * 94.99993 * 4 2 1 31 31 H 1.07991 * 120.00362 * 359.97438 * 6 5 4 32 32 H 1.08005 * 119.99645 * 180.25602 * 7 6 5 33 33 H 0.96995 * 119.99927 * 179.97438 * 13 12 10 34 34 H 1.08000 * 119.99426 * 179.97438 * 18 8 7 35 35 H 1.07997 * 119.99955 * 179.97438 * 19 18 8 36 36 H 1.08003 * 120.78396 * 0.04621 * 21 20 2 37 37 H 1.08008 * 120.42413 * 179.97438 * 22 21 20 38 38 H 1.07998 * 119.61296 * 180.26590 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 2.1518 0.0067 2.4003 6 6 1.8267 1.3563 2.4614 7 6 1.9532 2.0430 3.6518 8 6 2.4161 1.3882 4.7858 9 8 2.5462 2.0657 5.9555 10 6 2.8904 1.3479 7.0436 11 1 3.1290 0.2992 6.9453 12 6 2.9381 1.9559 8.2883 13 7 2.6479 3.2338 8.4080 14 14 3.4143 0.9611 9.7960 15 1 4.7809 0.4095 9.6137 16 1 3.3906 1.8373 10.9948 17 1 2.4506 -0.1539 9.9781 18 6 2.7466 0.0404 4.7235 19 6 2.6145 -0.6484 3.5349 20 6 2.0323 -0.7104 -1.2305 21 6 2.4621 0.0137 -2.3327 22 6 2.9154 -0.6810 -3.4427 23 6 2.9237 -2.0646 -3.4148 24 17 3.4884 -2.9477 -4.7986 25 7 2.5020 -2.7201 -2.3501 26 6 2.0688 -2.0907 -1.2750 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 2.2490 -1.6318 1.1525 31 1 1.4712 1.8666 1.5786 32 1 1.6966 3.0910 3.7005 33 1 2.6809 3.6591 9.2791 34 1 3.1069 -0.4685 5.6054 35 1 2.8719 -1.6961 3.4865 36 1 2.4442 1.0936 -2.3259 37 1 3.2572 -0.1495 -4.3186 38 1 1.7354 -2.6610 -0.4207 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116496188.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:59:29 Heat of formation + Delta-G solvation = 34.450310 kcal Electronic energy + Delta-G solvation = -22511.619950 eV Core-core repulsion = 18959.811172 eV Total energy + Delta-G solvation = -3551.808778 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.088 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.85309 -39.10685 -37.58554 -36.93457 -35.43711 -33.05221 -32.25083 -31.47851 -30.34874 -29.40348 -27.15531 -25.21047 -24.57171 -24.02108 -22.45067 -21.39596 -20.44496 -18.07418 -17.81184 -17.51244 -16.79101 -16.51157 -15.59083 -15.09911 -14.96158 -14.49959 -14.33492 -14.04852 -13.78882 -13.63080 -13.50895 -13.29655 -12.99159 -12.66191 -12.45260 -12.19500 -11.97706 -11.75810 -11.63100 -11.55575 -11.40461 -11.22643 -10.95662 -10.61774 -10.38406 -10.34735 -9.97124 -9.36875 -9.25168 -9.19164 -8.49676 -8.21576 -6.47633 -6.34588 -3.92063 0.46448 0.72947 1.42897 2.15963 2.51842 3.17218 3.17868 3.18752 3.21307 3.63898 3.99311 4.04284 4.24559 4.44513 4.48386 4.62997 4.69980 4.96021 5.13723 5.18261 5.19878 5.37907 5.39867 5.47589 5.59941 5.66235 5.72988 5.78974 6.00273 6.08671 6.18239 6.20593 6.47798 6.81254 6.85269 7.08152 7.26899 7.29507 7.40241 7.58794 7.87937 8.09487 8.12120 9.11267 9.84793 10.83952 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.033255 B = 0.002128 C = 0.002063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.785801 B =13154.479326 C =13567.203554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.201 3.799 3 H 0.089 0.911 4 N -0.754 5.754 5 C 0.122 3.878 6 C -0.145 4.145 7 C -0.151 4.151 8 C 0.115 3.885 9 O -0.187 6.187 10 C -0.387 4.387 11 H 0.088 0.912 12 C 0.036 3.964 13 N -0.868 5.868 14 Si 0.938 3.062 15 H -0.271 1.271 16 H -0.279 1.279 17 H -0.271 1.271 18 C -0.190 4.190 19 C -0.138 4.138 20 C -0.130 4.130 21 C -0.054 4.054 22 C -0.150 4.150 23 C 0.169 3.831 24 Cl -0.035 7.035 25 N -0.475 5.475 26 C 0.126 3.874 27 H 0.058 0.942 28 H 0.072 0.928 29 H 0.059 0.941 30 H 0.390 0.610 31 H 0.111 0.889 32 H 0.117 0.883 33 H 0.268 0.732 34 H 0.128 0.872 35 H 0.106 0.894 36 H 0.149 0.851 37 H 0.147 0.853 38 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.620 -7.869 -22.916 24.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.094 3.906 3 H 0.107 0.893 4 N -0.391 5.391 5 C 0.025 3.975 6 C -0.167 4.167 7 C -0.171 4.171 8 C 0.062 3.938 9 O -0.092 6.092 10 C -0.464 4.464 11 H 0.105 0.895 12 C -0.167 4.167 13 N -0.505 5.505 14 Si 0.763 3.237 15 H -0.197 1.197 16 H -0.204 1.204 17 H -0.197 1.197 18 C -0.210 4.210 19 C -0.160 4.160 20 C -0.132 4.132 21 C -0.080 4.080 22 C -0.171 4.171 23 C 0.004 3.996 24 Cl -0.006 7.006 25 N -0.185 5.185 26 C -0.031 4.031 27 H 0.077 0.923 28 H 0.091 0.909 29 H 0.078 0.922 30 H 0.224 0.776 31 H 0.129 0.871 32 H 0.135 0.865 33 H 0.078 0.922 34 H 0.145 0.855 35 H 0.124 0.876 36 H 0.166 0.834 37 H 0.165 0.835 38 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -1.651 -8.300 -22.888 24.402 hybrid contribution 0.406 -0.217 0.594 0.752 sum -1.245 -8.517 -22.293 23.897 Atomic orbital electron populations 1.22328 0.94915 1.02643 1.02560 1.19495 0.93593 0.96103 0.81382 0.89334 1.44293 1.76895 1.11437 1.06465 1.17322 1.02841 0.91666 0.85670 1.20182 1.06718 0.92554 0.97205 1.20027 1.06060 0.99939 0.91097 1.19260 0.95591 0.90713 0.88195 1.83987 1.77265 1.34796 1.13132 1.21183 1.46915 0.94430 0.83901 0.89478 1.25220 0.97215 0.96208 0.98034 1.70040 1.45817 1.09801 1.24807 0.85835 0.79145 0.78864 0.79864 1.19671 1.20413 1.19657 1.20998 1.07049 0.94895 0.98079 1.20229 1.05151 0.98693 0.91955 1.21216 0.99514 0.95375 0.97130 1.21512 0.93969 1.01167 0.91361 1.21844 1.02010 0.92642 1.00614 1.21675 0.98495 0.89093 0.90290 1.98411 1.86769 1.77426 1.38001 1.67031 1.10518 1.41370 0.99591 1.22456 0.94537 0.91465 0.94630 0.92313 0.90929 0.92200 0.77566 0.87064 0.86500 0.92221 0.85475 0.87598 0.83364 0.83529 0.81921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.49 9.42 37.16 0.35 -1.14 16 2 C 0.20 1.92 2.49 -69.08 -0.17 1.75 16 3 H 0.09 0.85 6.36 -51.93 -0.33 0.52 16 4 N -0.75 -8.94 5.20 -53.24 -0.28 -9.21 16 5 C 0.12 1.94 6.64 -83.70 -0.56 1.38 16 6 C -0.14 -2.41 8.86 -39.40 -0.35 -2.76 16 7 C -0.15 -3.09 9.98 -39.42 -0.39 -3.48 16 8 C 0.12 2.74 6.65 -39.09 -0.26 2.48 16 9 O -0.19 -5.33 9.76 -0.06 0.00 -5.34 16 10 C -0.39 -10.87 9.48 30.87 0.29 -10.58 16 11 H 0.09 2.25 5.20 -52.49 -0.27 1.98 16 12 C 0.04 1.01 5.49 -17.52 -0.10 0.91 16 13 N -0.87 -25.71 13.67 55.48 0.76 -24.95 16 14 Si 0.94 20.73 29.55 -169.99 -5.02 15.70 16 15 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 16 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 17 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 18 C -0.19 -4.05 9.16 -39.42 -0.36 -4.41 16 19 C -0.14 -2.43 9.89 -39.40 -0.39 -2.82 16 20 C -0.13 -1.13 4.97 -104.48 -0.52 -1.65 16 21 C -0.05 -0.40 9.82 -39.29 -0.39 -0.78 16 22 C -0.15 -1.15 9.88 -39.40 -0.39 -1.54 16 23 C 0.17 1.65 7.27 -17.45 -0.13 1.52 16 24 Cl -0.03 -0.31 29.11 -51.86 -1.51 -1.82 16 25 N -0.47 -5.21 10.34 -10.36 -0.11 -5.32 16 26 C 0.13 1.20 10.23 -17.55 -0.18 1.02 16 27 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.07 0.76 7.74 -51.93 -0.40 0.36 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.39 4.11 6.91 -40.82 -0.28 3.83 16 31 H 0.11 1.52 6.13 -52.49 -0.32 1.20 16 32 H 0.12 2.30 8.06 -52.48 -0.42 1.88 16 33 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 34 H 0.13 2.73 5.63 -52.49 -0.30 2.43 16 35 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 36 H 0.15 0.74 8.06 -52.48 -0.42 0.32 16 37 H 0.15 0.76 8.06 -52.48 -0.42 0.34 16 38 H 0.16 1.31 6.93 -52.49 -0.36 0.95 16 LS Contribution 340.91 15.07 5.14 5.14 Total: -1.00 -31.79 340.91 -8.50 -40.28 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: -3.94 Total: 5.61 kcal Atomic # 6 Polarization: -16.56 SS G_CDS: -3.53 Total: -20.09 kcal Atomic # 7 Polarization: -39.86 SS G_CDS: 0.37 Total: -39.49 kcal Atomic # 8 Polarization: -5.33 SS G_CDS: 0.00 Total: -5.34 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.70 kcal Atomic # 17 Polarization: -0.31 SS G_CDS: -1.51 Total: -1.82 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -31.79 -8.50 -40.28 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116496188.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.734 kcal (2) G-P(sol) polarization free energy of solvation -31.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.284 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds