Wall clock time and date at job start Tue Mar 31 2020 11:59:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.47188 * 2 1 4 4 N 1.46494 * 109.46978 * 120.00161 * 2 1 3 5 5 C 1.39786 * 120.00177 * 274.99762 * 4 2 1 6 6 C 1.38955 * 120.00201 * 359.73251 * 5 4 2 7 7 C 1.38011 * 119.98863 * 179.72262 * 6 5 4 8 8 C 1.38897 * 120.00987 * 0.54336 * 7 6 5 9 9 O 1.35798 * 119.99679 * 179.70572 * 8 7 6 10 10 C 1.34816 * 116.99997 * 174.48327 * 9 8 7 11 11 H 1.07998 * 119.99585 * 5.05686 * 10 9 8 12 12 C 1.38612 * 120.00055 * 185.05487 * 10 9 8 13 13 N 1.31592 * 120.00093 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 120.00069 * 179.97438 * 12 10 9 15 15 H 1.48506 * 109.47084 * 60.00437 * 14 12 10 16 16 H 1.48504 * 109.46966 * 179.97438 * 14 12 10 17 17 H 1.48497 * 109.47388 * 300.00223 * 14 12 10 18 18 C 1.38907 * 120.00925 * 359.73054 * 8 7 6 19 19 C 1.38010 * 120.00503 * 359.97438 * 18 8 7 20 20 C 1.50702 * 109.47111 * 240.00281 * 2 1 3 21 21 C 1.38704 * 120.40271 * 99.99747 * 20 2 1 22 22 C 1.38568 * 118.43460 * 180.02562 * 21 20 2 23 23 C 1.38388 * 119.15053 * 0.02562 * 22 21 20 24 24 Cl 1.73599 * 119.63556 * 179.97438 * 23 22 21 25 25 N 1.31950 * 120.73023 * 0.25263 * 23 22 21 26 26 C 1.31903 * 121.70807 * 359.48168 * 25 23 22 27 27 H 1.09000 * 109.47188 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47516 * 299.99765 * 1 2 3 29 29 H 1.09001 * 109.47327 * 59.99792 * 1 2 3 30 30 H 0.97001 * 120.00060 * 94.99993 * 4 2 1 31 31 H 1.07991 * 120.00362 * 359.97438 * 6 5 4 32 32 H 1.08005 * 119.99645 * 180.25602 * 7 6 5 33 33 H 0.96995 * 119.99927 * 179.97438 * 13 12 10 34 34 H 1.08000 * 119.99426 * 179.97438 * 18 8 7 35 35 H 1.07997 * 119.99955 * 179.97438 * 19 18 8 36 36 H 1.08003 * 120.78396 * 0.04621 * 21 20 2 37 37 H 1.08008 * 120.42413 * 179.97438 * 22 21 20 38 38 H 1.07998 * 119.61296 * 180.26590 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 2.1518 0.0067 2.4003 6 6 1.8267 1.3563 2.4614 7 6 1.9532 2.0430 3.6518 8 6 2.4161 1.3882 4.7858 9 8 2.5462 2.0657 5.9555 10 6 2.8904 1.3479 7.0436 11 1 3.1290 0.2992 6.9453 12 6 2.9381 1.9559 8.2883 13 7 2.6479 3.2338 8.4080 14 14 3.4143 0.9611 9.7960 15 1 4.7809 0.4095 9.6137 16 1 3.3906 1.8373 10.9948 17 1 2.4506 -0.1539 9.9781 18 6 2.7466 0.0404 4.7235 19 6 2.6145 -0.6484 3.5349 20 6 2.0323 -0.7104 -1.2305 21 6 2.4621 0.0137 -2.3327 22 6 2.9154 -0.6810 -3.4427 23 6 2.9237 -2.0646 -3.4148 24 17 3.4884 -2.9477 -4.7986 25 7 2.5020 -2.7201 -2.3501 26 6 2.0688 -2.0907 -1.2750 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 2.2490 -1.6318 1.1525 31 1 1.4712 1.8666 1.5786 32 1 1.6966 3.0910 3.7005 33 1 2.6809 3.6591 9.2791 34 1 3.1069 -0.4685 5.6054 35 1 2.8719 -1.6961 3.4865 36 1 2.4442 1.0936 -2.3259 37 1 3.2572 -0.1495 -4.3186 38 1 1.7354 -2.6610 -0.4207 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116496188.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:59:28 Heat of formation + Delta-G solvation = 14.765783 kcal Electronic energy + Delta-G solvation = -22512.473535 eV Core-core repulsion = 18959.811172 eV Total energy + Delta-G solvation = -3552.662363 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.088 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.55629 -40.65154 -38.94410 -37.73188 -36.65028 -34.25128 -33.69426 -32.57562 -31.77227 -30.27410 -28.59564 -27.05732 -25.31020 -24.76712 -23.84088 -22.66742 -21.66661 -19.66525 -18.90140 -18.67436 -18.07870 -17.47730 -16.72452 -16.29137 -16.01636 -15.65876 -15.53409 -15.34868 -15.31633 -14.70809 -14.51076 -14.30345 -14.15861 -14.03340 -13.73222 -13.46544 -13.18660 -13.03477 -12.68509 -12.63267 -12.48421 -12.39559 -12.24884 -12.16864 -12.02756 -11.08019 -11.01376 -10.88864 -10.65080 -10.22462 -9.90764 -9.73687 -8.37806 -7.93710 -6.01207 -0.19878 0.12072 0.62451 0.77287 0.96158 1.37496 1.48414 1.53202 2.23704 2.44872 2.66978 2.93491 3.27849 3.35685 3.55904 3.70366 3.82942 3.89050 4.02990 4.16257 4.19712 4.35958 4.39551 4.59694 4.61049 4.66313 4.79665 4.87658 4.95087 4.98746 5.11887 5.15866 5.30367 5.37135 5.43316 5.51222 5.58494 5.82083 5.99931 6.13577 6.57453 6.65350 6.96881 7.08225 7.95452 8.86332 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.033255 B = 0.002128 C = 0.002063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.785801 B =13154.479326 C =13567.203554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.201 3.799 3 H 0.098 0.902 4 N -0.742 5.742 5 C 0.156 3.844 6 C -0.140 4.140 7 C -0.155 4.155 8 C 0.062 3.938 9 O -0.242 6.242 10 C -0.405 4.405 11 H 0.097 0.903 12 C -0.029 4.029 13 N -0.926 5.926 14 Si 1.015 2.985 15 H -0.259 1.259 16 H -0.274 1.274 17 H -0.259 1.259 18 C -0.196 4.196 19 C -0.145 4.145 20 C -0.132 4.132 21 C -0.048 4.048 22 C -0.146 4.146 23 C 0.151 3.849 24 Cl -0.037 7.037 25 N -0.504 5.504 26 C 0.117 3.883 27 H 0.058 0.942 28 H 0.058 0.942 29 H 0.080 0.920 30 H 0.400 0.600 31 H 0.150 0.850 32 H 0.114 0.886 33 H 0.269 0.731 34 H 0.116 0.884 35 H 0.136 0.864 36 H 0.178 0.822 37 H 0.172 0.828 38 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.685 -9.199 -25.510 27.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.095 3.905 3 H 0.115 0.885 4 N -0.377 5.377 5 C 0.056 3.944 6 C -0.162 4.162 7 C -0.175 4.175 8 C 0.012 3.988 9 O -0.150 6.150 10 C -0.481 4.481 11 H 0.115 0.885 12 C -0.225 4.225 13 N -0.566 5.566 14 Si 0.835 3.165 15 H -0.184 1.184 16 H -0.199 1.199 17 H -0.183 1.183 18 C -0.215 4.215 19 C -0.167 4.167 20 C -0.134 4.134 21 C -0.074 4.074 22 C -0.166 4.166 23 C -0.013 4.013 24 Cl -0.008 7.008 25 N -0.215 5.215 26 C -0.040 4.040 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.099 0.901 30 H 0.236 0.764 31 H 0.167 0.833 32 H 0.132 0.868 33 H 0.078 0.922 34 H 0.134 0.866 35 H 0.154 0.846 36 H 0.196 0.804 37 H 0.189 0.811 38 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -1.726 -9.686 -25.584 27.410 hybrid contribution 0.360 0.065 0.936 1.005 sum -1.366 -9.621 -24.648 26.495 Atomic orbital electron populations 1.22288 0.94103 1.02850 1.02906 1.19645 0.94063 0.96280 0.80475 0.88452 1.44416 1.75521 1.11962 1.05817 1.17413 0.99017 0.91405 0.86539 1.20484 1.05801 0.92903 0.96971 1.20267 1.05569 1.00170 0.91505 1.19789 0.98769 0.92285 0.87939 1.83933 1.80082 1.36463 1.14557 1.21684 1.46746 0.95075 0.84619 0.88534 1.26501 0.97214 0.97465 1.01343 1.70196 1.48756 1.11995 1.25629 0.84698 0.79369 0.77314 0.75143 1.18353 1.19851 1.18345 1.21041 1.07057 0.94163 0.99278 1.20478 1.05068 1.00059 0.91123 1.21103 1.00108 0.95028 0.97187 1.21873 0.92441 1.02603 0.90463 1.22135 1.01083 0.91800 1.01589 1.21970 0.99006 0.90075 0.90206 1.98407 1.86794 1.77661 1.37974 1.66985 1.11651 1.42406 1.00409 1.22621 0.94686 0.92051 0.94650 0.92272 0.92312 0.90149 0.76375 0.83277 0.86807 0.92194 0.86631 0.84603 0.80429 0.81066 0.81181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.27 9.42 71.98 0.68 -1.59 16 2 C 0.20 2.96 2.49 44.25 0.11 3.07 16 3 H 0.10 1.35 6.36 -2.39 -0.02 1.33 16 4 N -0.74 -14.60 5.20 -322.36 -1.68 -16.28 16 5 C 0.16 4.48 6.64 38.21 0.25 4.73 16 6 C -0.14 -4.30 8.86 22.39 0.20 -4.11 16 7 C -0.16 -6.38 9.98 22.37 0.22 -6.16 16 8 C 0.06 3.05 6.65 22.59 0.15 3.20 16 9 O -0.24 -14.72 9.76 -23.12 -0.23 -14.94 16 10 C -0.40 -23.88 9.48 67.91 0.64 -23.24 16 11 H 0.10 5.23 5.20 -2.91 -0.02 5.21 16 12 C -0.03 -1.68 5.49 84.82 0.47 -1.21 16 13 N -0.93 -57.80 13.67 21.61 0.30 -57.50 16 14 Si 1.01 43.70 29.55 68.60 2.03 45.73 16 15 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16 16 H -0.27 -11.37 7.11 99.48 0.71 -10.67 16 17 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16 18 C -0.20 -8.43 9.16 22.38 0.20 -8.23 16 19 C -0.15 -4.81 9.89 22.39 0.22 -4.59 16 20 C -0.13 -1.78 4.97 -19.77 -0.10 -1.88 16 21 C -0.05 -0.50 9.82 22.46 0.22 -0.28 16 22 C -0.15 -1.71 9.88 22.38 0.22 -1.49 16 23 C 0.15 2.61 7.27 84.71 0.62 3.22 16 24 Cl -0.04 -0.60 29.11 -2.72 -0.08 -0.68 16 25 N -0.50 -10.02 10.34 -186.70 -1.93 -11.95 16 26 C 0.12 1.89 10.23 84.66 0.87 2.76 16 27 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 28 H 0.06 1.01 7.74 -2.39 -0.02 1.00 16 29 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.40 6.81 6.91 -92.71 -0.64 6.17 16 31 H 0.15 3.45 6.13 -2.92 -0.02 3.43 16 32 H 0.11 4.62 8.06 -2.91 -0.02 4.60 16 33 H 0.27 15.47 8.31 -92.71 -0.77 14.69 16 34 H 0.12 5.13 5.63 -2.91 -0.02 5.11 16 35 H 0.14 3.66 8.06 -2.91 -0.02 3.64 16 36 H 0.18 0.78 8.06 -2.91 -0.02 0.76 16 37 H 0.17 1.09 8.06 -2.91 -0.02 1.07 16 38 H 0.17 2.27 6.93 -2.91 -0.02 2.25 16 Total: -1.00 -74.59 340.91 3.86 -70.73 By element: Atomic # 1 Polarization: 20.22 SS G_CDS: 0.47 Total: 20.69 kcal Atomic # 6 Polarization: -40.77 SS G_CDS: 4.98 Total: -35.79 kcal Atomic # 7 Polarization: -82.42 SS G_CDS: -3.31 Total: -85.73 kcal Atomic # 8 Polarization: -14.72 SS G_CDS: -0.23 Total: -14.94 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.73 kcal Atomic # 17 Polarization: -0.60 SS G_CDS: -0.08 Total: -0.68 kcal Total: -74.59 3.86 -70.73 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116496188.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.499 kcal (2) G-P(sol) polarization free energy of solvation -74.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.733 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds