Wall clock time and date at job start Tue Mar 31 2020 12:44:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86805 * 119.99748 * 2 1 4 4 H 1.48498 * 109.47166 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47168 * 300.00217 * 3 2 1 6 6 H 1.48500 * 109.47152 * 60.00251 * 3 2 1 7 7 C 1.37869 * 120.00218 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99986 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00101 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.47414 * 179.97438 * 9 7 2 11 11 N 1.46494 * 109.47235 * 179.97438 * 10 9 7 12 12 C 1.34779 * 119.99879 * 179.97438 * 11 10 9 13 13 O 1.21356 * 120.00212 * 0.02562 * 12 11 10 14 14 C 1.49356 * 119.99698 * 180.02562 * 12 11 10 15 15 O 1.21373 * 120.00150 * 0.02562 * 14 12 11 16 16 N 1.34779 * 119.99698 * 180.02562 * 14 12 11 17 17 C 1.39754 * 120.00110 * 184.46118 * 16 14 12 18 18 C 1.39205 * 120.10543 * 325.35170 * 17 16 14 19 19 C 1.38212 * 120.13156 * 179.97438 * 18 17 16 20 20 C 1.38034 * 120.41340 * 0.02562 * 19 18 17 21 21 C 1.39626 * 119.95558 * 359.97438 * 20 19 18 22 22 C 1.38202 * 120.10585 * 145.37307 * 17 16 14 23 23 C 1.50784 * 133.38729 * 0.02562 * 22 17 16 24 24 O 1.45400 * 106.45150 * 179.97438 * 23 22 17 25 25 C 1.34460 * 108.93329 * 0.05325 * 24 23 22 26 26 O 1.21465 * 124.88085 * 179.97438 * 25 24 23 27 27 H 0.97004 * 120.00804 * 359.97438 * 1 2 3 28 28 H 1.08996 * 109.47219 * 59.99547 * 9 7 2 29 29 H 1.08996 * 109.46883 * 299.99544 * 9 7 2 30 30 H 1.08996 * 109.47194 * 59.99659 * 10 9 7 31 31 H 1.09005 * 109.46634 * 299.99778 * 10 9 7 32 32 H 0.97003 * 120.00357 * 0.02562 * 11 10 9 33 33 H 0.97002 * 120.00305 * 4.47222 * 16 14 12 34 34 H 1.08001 * 119.93125 * 0.02562 * 18 17 16 35 35 H 1.07996 * 119.78869 * 180.02562 * 19 18 17 36 36 H 1.08005 * 120.02187 * 179.97438 * 20 19 18 37 37 H 1.08998 * 110.07242 * 299.23422 * 23 22 17 38 38 H 1.09003 * 110.06871 * 60.71507 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7090 1.3465 0.0006 5 1 1.8902 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1939 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0005 11 7 1.5129 -4.9307 0.0012 12 6 2.1868 -6.0979 0.0007 13 8 3.4004 -6.0979 0.0003 14 6 1.4400 -7.3914 0.0008 15 8 0.2263 -7.3914 0.0007 16 7 2.1140 -8.5586 0.0009 17 6 1.4185 -9.7671 -0.0932 18 6 0.1681 -9.9014 0.5038 19 6 -0.5204 -11.0962 0.4106 20 6 0.0238 -12.1649 -0.2729 21 6 1.2772 -12.0416 -0.8756 22 6 1.9700 -10.8328 -0.7788 23 6 3.2675 -11.0262 -1.5222 24 8 3.2537 -12.3897 -2.0268 25 6 2.1043 -12.9806 -1.6558 26 8 1.7924 -14.1234 -1.9244 27 1 -0.4851 0.8400 0.0004 28 1 0.6247 -2.5570 -0.8896 29 1 0.6241 -2.5566 0.8903 30 1 2.8720 -3.6043 0.8904 31 1 2.8719 -3.6042 -0.8895 32 1 0.5428 -4.9308 0.0011 33 1 3.0818 -8.5598 0.0664 34 1 -0.2651 -9.0701 1.0401 35 1 -1.4903 -11.1942 0.8755 36 1 -0.5196 -13.0957 -0.3414 37 1 3.3324 -10.3213 -2.3511 38 1 4.1107 -10.8863 -0.8457 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001117515567.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:44:42 Heat of formation + Delta-G solvation = -112.813879 kcal Electronic energy + Delta-G solvation = -24861.664184 eV Core-core repulsion = 20862.760387 eV Total energy + Delta-G solvation = -3998.903797 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.109 amu Computer time = 4.25 seconds Orbital eigenvalues (eV) -42.15795 -41.00597 -39.24164 -38.19746 -37.70637 -35.79669 -34.91039 -32.97908 -32.39852 -30.61265 -29.92467 -27.75584 -26.09418 -24.94206 -23.74974 -22.82671 -21.40452 -20.97183 -20.40265 -18.91059 -18.34661 -17.46111 -17.23550 -16.96718 -16.47785 -16.30523 -16.18953 -15.79542 -15.21277 -15.01628 -14.59679 -14.56551 -14.18912 -14.13011 -13.85313 -13.73693 -13.42311 -13.07786 -12.76239 -12.40869 -12.13056 -11.70097 -11.41479 -11.34185 -11.15615 -11.05828 -10.80141 -10.72365 -10.52743 -9.96631 -9.65215 -9.52533 -9.33938 -8.90601 -8.80936 -8.51336 -6.18201 -4.22296 0.06785 0.46809 1.30282 1.99193 2.10898 2.58141 3.01575 3.14480 3.22104 3.22594 3.30497 3.34153 3.45909 3.59070 4.29805 4.30666 4.42455 4.55344 4.59272 4.69637 4.77697 4.87438 5.04170 5.19082 5.42727 5.52797 5.71041 5.81785 6.01824 6.09642 6.10685 6.26178 6.37761 6.53832 6.59067 6.99308 7.21413 7.40306 7.46319 7.60031 7.78122 8.00160 8.17883 8.83459 9.43333 10.93209 Molecular weight = 318.11amu Principal moments of inertia in cm(-1) A = 0.033282 B = 0.002113 C = 0.002022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.083288 B =13246.418820 C =13847.397132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.059 3.941 3 Si 0.898 3.102 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.524 4.524 8 H 0.061 0.939 9 C 0.010 3.990 10 C 0.118 3.882 11 N -0.680 5.680 12 C 0.500 3.500 13 O -0.527 6.527 14 C 0.512 3.488 15 O -0.495 6.495 16 N -0.652 5.652 17 C 0.171 3.829 18 C -0.079 4.079 19 C -0.105 4.105 20 C -0.046 4.046 21 C -0.176 4.176 22 C -0.131 4.131 23 C 0.094 3.906 24 O -0.316 6.316 25 C 0.525 3.475 26 O -0.451 6.451 27 H 0.263 0.737 28 H 0.025 0.975 29 H 0.026 0.974 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.412 0.588 33 H 0.425 0.575 34 H 0.157 0.843 35 H 0.144 0.856 36 H 0.140 0.860 37 H 0.120 0.880 38 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.668 -22.684 0.886 22.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.143 4.143 3 Si 0.726 3.274 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.563 4.563 8 H 0.079 0.921 9 C -0.027 4.027 10 C -0.003 4.003 11 N -0.331 5.331 12 C 0.279 3.721 13 O -0.405 6.405 14 C 0.295 3.705 15 O -0.368 6.368 16 N -0.299 5.299 17 C 0.076 3.924 18 C -0.099 4.099 19 C -0.123 4.123 20 C -0.065 4.065 21 C -0.178 4.178 22 C -0.134 4.134 23 C 0.020 3.980 24 O -0.231 6.231 25 C 0.367 3.633 26 O -0.336 6.336 27 H 0.072 0.928 28 H 0.044 0.956 29 H 0.044 0.956 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.248 0.752 33 H 0.264 0.736 34 H 0.174 0.826 35 H 0.162 0.838 36 H 0.157 0.843 37 H 0.138 0.862 38 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 1.576 -23.056 0.613 23.118 hybrid contribution 0.309 1.101 0.085 1.146 sum 1.884 -21.955 0.698 22.047 Atomic orbital electron populations 1.69956 1.06111 1.26962 1.49956 1.25003 0.94911 0.99513 0.94850 0.86437 0.80098 0.83217 0.77693 1.19562 1.20880 1.20890 1.21025 0.93263 0.90149 1.51862 0.92069 1.19369 0.94171 0.90848 0.98310 1.22011 0.96343 0.80416 1.01579 1.46265 1.11914 1.05712 1.69216 1.19624 0.87645 0.84790 0.80056 1.90766 1.12925 1.87244 1.49599 1.20765 0.87859 0.85446 0.76458 1.90770 1.13355 1.87276 1.45383 1.43178 1.11971 1.03235 1.71551 1.16770 0.93811 0.84126 0.97671 1.21708 0.92950 0.98766 0.96512 1.21165 1.00584 0.91759 0.98813 1.20923 0.92348 0.99514 0.93740 1.20599 0.97738 0.94978 1.04532 1.20486 0.98293 0.94969 0.99629 1.22376 0.95550 0.80833 0.99232 1.87298 1.38563 1.26962 1.70256 1.20483 0.79871 0.86150 0.76840 1.90895 1.71961 1.16512 1.54207 0.92751 0.95620 0.95607 0.91596 0.91606 0.75237 0.73629 0.82584 0.83791 0.84260 0.86191 0.86297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.24 13.28 55.43 0.74 -24.51 16 2 C 0.06 1.61 5.46 -17.83 -0.10 1.51 16 3 Si 0.90 20.59 29.54 -169.99 -5.02 15.57 16 4 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 5 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 6 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.52 -13.78 9.11 -34.44 -0.31 -14.10 16 8 H 0.06 1.56 7.74 -52.48 -0.41 1.16 16 9 C 0.01 0.24 5.09 -27.88 -0.14 0.10 16 10 C 0.12 2.24 5.61 -4.04 -0.02 2.21 16 11 N -0.68 -10.78 5.55 -60.76 -0.34 -11.11 16 12 C 0.50 7.22 7.89 -11.63 -0.09 7.13 16 13 O -0.53 -8.50 16.48 5.49 0.09 -8.41 16 14 C 0.51 6.12 7.73 -11.63 -0.09 6.03 16 15 O -0.50 -6.61 13.89 5.48 0.08 -6.54 16 16 N -0.65 -5.88 5.32 -10.39 -0.06 -5.94 16 17 C 0.17 1.50 6.29 -83.90 -0.53 0.97 16 18 C -0.08 -0.69 8.71 -39.23 -0.34 -1.03 16 19 C -0.10 -0.73 10.01 -39.67 -0.40 -1.13 16 20 C -0.05 -0.35 10.10 -39.14 -0.40 -0.75 16 21 C -0.18 -1.59 6.27 -105.09 -0.66 -2.25 16 22 C -0.13 -1.04 6.30 -104.06 -0.66 -1.70 16 23 C 0.09 0.58 7.92 36.05 0.29 0.87 16 24 O -0.32 -3.00 11.14 -39.49 -0.44 -3.44 16 25 C 0.52 5.70 8.59 34.49 0.30 6.00 16 26 O -0.45 -6.20 18.04 -18.91 -0.34 -6.54 16 27 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 28 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 29 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 30 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 31 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 32 H 0.41 6.14 7.94 -40.82 -0.32 5.82 16 33 H 0.43 3.06 8.30 -40.82 -0.34 2.72 16 34 H 0.16 1.46 6.19 -52.49 -0.33 1.14 16 35 H 0.14 0.65 8.06 -52.49 -0.42 0.23 16 36 H 0.14 0.85 8.06 -52.48 -0.42 0.42 16 37 H 0.12 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.12 0.43 8.14 -51.93 -0.42 0.00 16 LS Contribution 343.08 15.07 5.17 5.17 Total: -1.00 -32.06 343.08 -7.18 -39.24 By element: Atomic # 1 Polarization: 6.55 SS G_CDS: -3.91 Total: 2.64 kcal Atomic # 6 Polarization: 7.01 SS G_CDS: -3.15 Total: 3.86 kcal Atomic # 7 Polarization: -41.90 SS G_CDS: 0.34 Total: -41.56 kcal Atomic # 8 Polarization: -24.31 SS G_CDS: -0.61 Total: -24.93 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -32.06 -7.18 -39.24 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117515567.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.571 kcal (2) G-P(sol) polarization free energy of solvation -32.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.25 seconds