Wall clock time and date at job start Tue Mar 31 2020 12:44:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86805 * 119.99748 * 2 1 4 4 H 1.48498 * 109.47166 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47168 * 300.00217 * 3 2 1 6 6 H 1.48500 * 109.47152 * 60.00251 * 3 2 1 7 7 C 1.37869 * 120.00218 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99986 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00101 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.47414 * 179.97438 * 9 7 2 11 11 N 1.46494 * 109.47235 * 179.97438 * 10 9 7 12 12 C 1.34779 * 119.99879 * 179.97438 * 11 10 9 13 13 O 1.21356 * 120.00212 * 0.02562 * 12 11 10 14 14 C 1.49356 * 119.99698 * 180.02562 * 12 11 10 15 15 O 1.21373 * 120.00150 * 0.02562 * 14 12 11 16 16 N 1.34779 * 119.99698 * 180.02562 * 14 12 11 17 17 C 1.39754 * 120.00110 * 184.46118 * 16 14 12 18 18 C 1.39205 * 120.10543 * 325.35170 * 17 16 14 19 19 C 1.38212 * 120.13156 * 179.97438 * 18 17 16 20 20 C 1.38034 * 120.41340 * 0.02562 * 19 18 17 21 21 C 1.39626 * 119.95558 * 359.97438 * 20 19 18 22 22 C 1.38202 * 120.10585 * 145.37307 * 17 16 14 23 23 C 1.50784 * 133.38729 * 0.02562 * 22 17 16 24 24 O 1.45400 * 106.45150 * 179.97438 * 23 22 17 25 25 C 1.34460 * 108.93329 * 0.05325 * 24 23 22 26 26 O 1.21465 * 124.88085 * 179.97438 * 25 24 23 27 27 H 0.97004 * 120.00804 * 359.97438 * 1 2 3 28 28 H 1.08996 * 109.47219 * 59.99547 * 9 7 2 29 29 H 1.08996 * 109.46883 * 299.99544 * 9 7 2 30 30 H 1.08996 * 109.47194 * 59.99659 * 10 9 7 31 31 H 1.09005 * 109.46634 * 299.99778 * 10 9 7 32 32 H 0.97003 * 120.00357 * 0.02562 * 11 10 9 33 33 H 0.97002 * 120.00305 * 4.47222 * 16 14 12 34 34 H 1.08001 * 119.93125 * 0.02562 * 18 17 16 35 35 H 1.07996 * 119.78869 * 180.02562 * 19 18 17 36 36 H 1.08005 * 120.02187 * 179.97438 * 20 19 18 37 37 H 1.08998 * 110.07242 * 299.23422 * 23 22 17 38 38 H 1.09003 * 110.06871 * 60.71507 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7090 1.3465 0.0006 5 1 1.8902 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1939 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0005 11 7 1.5129 -4.9307 0.0012 12 6 2.1868 -6.0979 0.0007 13 8 3.4004 -6.0979 0.0003 14 6 1.4400 -7.3914 0.0008 15 8 0.2263 -7.3914 0.0007 16 7 2.1140 -8.5586 0.0009 17 6 1.4185 -9.7671 -0.0932 18 6 0.1681 -9.9014 0.5038 19 6 -0.5204 -11.0962 0.4106 20 6 0.0238 -12.1649 -0.2729 21 6 1.2772 -12.0416 -0.8756 22 6 1.9700 -10.8328 -0.7788 23 6 3.2675 -11.0262 -1.5222 24 8 3.2537 -12.3897 -2.0268 25 6 2.1043 -12.9806 -1.6558 26 8 1.7924 -14.1234 -1.9244 27 1 -0.4851 0.8400 0.0004 28 1 0.6247 -2.5570 -0.8896 29 1 0.6241 -2.5566 0.8903 30 1 2.8720 -3.6043 0.8904 31 1 2.8719 -3.6042 -0.8895 32 1 0.5428 -4.9308 0.0011 33 1 3.0818 -8.5598 0.0664 34 1 -0.2651 -9.0701 1.0401 35 1 -1.4903 -11.1942 0.8755 36 1 -0.5196 -13.0957 -0.3414 37 1 3.3324 -10.3213 -2.3511 38 1 4.1107 -10.8863 -0.8457 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001117515567.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:44:38 Heat of formation + Delta-G solvation = -134.802332 kcal Electronic energy + Delta-G solvation = -24862.617675 eV Core-core repulsion = 20862.760387 eV Total energy + Delta-G solvation = -3999.857288 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.109 amu Computer time = 3.68 seconds Orbital eigenvalues (eV) -42.88053 -41.97106 -40.26645 -39.11924 -38.50684 -36.99436 -36.05407 -34.81413 -33.04288 -31.74732 -31.24766 -28.40053 -27.47821 -26.03855 -24.90486 -23.49234 -22.94244 -22.01652 -21.29997 -19.94297 -19.12583 -18.56898 -18.27832 -17.94446 -17.74022 -17.24408 -17.04434 -16.67621 -16.53226 -16.29009 -16.07649 -15.51775 -15.10340 -14.99621 -14.82670 -14.56529 -14.46748 -14.31240 -14.01521 -13.50644 -13.24321 -12.96421 -12.77326 -12.65520 -12.50293 -12.28994 -12.08195 -11.82093 -11.69287 -11.61479 -11.40193 -10.79175 -10.61910 -10.22614 -10.17858 -9.50618 -8.23284 -6.33821 -0.62106 -0.25808 0.35955 1.06793 1.28217 1.42748 1.44657 1.56749 1.91949 1.98542 2.36530 2.47255 2.50357 2.54900 2.95588 3.12327 3.26415 3.72324 3.95303 4.10138 4.12229 4.18965 4.32113 4.38994 4.47236 4.48310 4.76680 4.83425 4.90493 5.04445 5.06396 5.19548 5.42907 5.43602 5.56663 5.59714 5.72601 5.80065 6.13543 6.19629 6.23861 6.53423 6.78336 6.84592 7.35991 8.88719 Molecular weight = 318.11amu Principal moments of inertia in cm(-1) A = 0.033282 B = 0.002113 C = 0.002022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.083288 B =13246.418820 C =13847.397132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.005 3.995 3 Si 0.965 3.035 4 H -0.262 1.262 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.542 4.542 8 H 0.065 0.935 9 C 0.017 3.983 10 C 0.138 3.862 11 N -0.685 5.685 12 C 0.506 3.494 13 O -0.541 6.541 14 C 0.522 3.478 15 O -0.510 6.510 16 N -0.633 5.633 17 C 0.156 3.844 18 C -0.085 4.085 19 C -0.099 4.099 20 C -0.042 4.042 21 C -0.194 4.194 22 C -0.117 4.117 23 C 0.089 3.911 24 O -0.325 6.325 25 C 0.525 3.475 26 O -0.492 6.492 27 H 0.265 0.735 28 H 0.008 0.992 29 H 0.009 0.991 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.416 0.584 33 H 0.435 0.565 34 H 0.150 0.850 35 H 0.171 0.829 36 H 0.154 0.846 37 H 0.140 0.860 38 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.498 -22.986 1.140 23.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.194 4.194 3 Si 0.790 3.210 4 H -0.186 1.186 5 H -0.206 1.206 6 H -0.205 1.205 7 C -0.581 4.581 8 H 0.084 0.916 9 C -0.020 4.020 10 C 0.015 3.985 11 N -0.336 5.336 12 C 0.286 3.714 13 O -0.420 6.420 14 C 0.304 3.696 15 O -0.385 6.385 16 N -0.281 5.281 17 C 0.062 3.938 18 C -0.105 4.105 19 C -0.117 4.117 20 C -0.060 4.060 21 C -0.196 4.196 22 C -0.120 4.120 23 C 0.016 3.984 24 O -0.240 6.240 25 C 0.369 3.631 26 O -0.380 6.380 27 H 0.074 0.926 28 H 0.026 0.974 29 H 0.027 0.973 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.253 0.747 33 H 0.275 0.725 34 H 0.168 0.832 35 H 0.189 0.811 36 H 0.172 0.828 37 H 0.157 0.843 38 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 2.441 -23.383 0.871 23.526 hybrid contribution 0.055 1.128 0.018 1.130 sum 2.495 -22.255 0.889 22.412 Atomic orbital electron populations 1.70068 1.07636 1.27919 1.51129 1.25888 0.95749 1.03212 0.94566 0.85393 0.79150 0.78807 0.77666 1.18554 1.20559 1.20535 1.21484 0.93791 0.91556 1.51219 0.91644 1.19188 0.94403 0.91905 0.96553 1.21501 0.95034 0.80519 1.01418 1.46051 1.12051 1.05358 1.70126 1.19931 0.87459 0.85209 0.78831 1.90758 1.13672 1.87635 1.49913 1.20109 0.87337 0.85157 0.76968 1.90781 1.13766 1.87320 1.46596 1.42955 1.12382 1.02478 1.70289 1.16776 0.94203 0.83928 0.98910 1.21820 0.93063 0.99241 0.96416 1.21414 1.01379 0.90699 0.98208 1.21197 0.91838 1.00284 0.92705 1.20598 0.98562 0.94958 1.05517 1.20518 0.98698 0.94066 0.98724 1.22778 0.95717 0.79514 1.00389 1.87271 1.38060 1.28461 1.70247 1.20712 0.80178 0.85856 0.76344 1.90864 1.72946 1.18187 1.55995 0.92624 0.97370 0.97270 0.91712 0.91788 0.74725 0.72459 0.83237 0.81132 0.82832 0.84290 0.83142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.11 13.28 21.44 0.28 -52.82 16 2 C 0.00 0.25 5.46 84.65 0.46 0.71 16 3 Si 0.96 41.99 29.54 68.60 2.03 44.02 16 4 H -0.26 -10.87 7.11 99.48 0.71 -10.16 16 5 H -0.28 -11.96 7.11 99.48 0.71 -11.26 16 6 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 7 C -0.54 -28.55 9.11 25.60 0.23 -28.32 16 8 H 0.07 3.31 7.74 -2.91 -0.02 3.29 16 9 C 0.02 0.80 5.09 29.85 0.15 0.96 16 10 C 0.14 5.20 5.61 86.38 0.48 5.68 16 11 N -0.68 -21.35 5.55 -464.51 -2.58 -23.92 16 12 C 0.51 13.98 7.89 87.24 0.69 14.67 16 13 O -0.54 -16.60 16.48 -3.26 -0.05 -16.65 16 14 C 0.52 11.69 7.73 87.24 0.67 12.36 16 15 O -0.51 -13.02 13.89 -3.32 -0.05 -13.06 16 16 N -0.63 -10.10 5.32 -305.15 -1.62 -11.72 16 17 C 0.16 2.41 6.29 38.10 0.24 2.65 16 18 C -0.09 -1.33 8.71 22.50 0.20 -1.13 16 19 C -0.10 -1.16 10.01 22.21 0.22 -0.94 16 20 C -0.04 -0.56 10.10 22.56 0.23 -0.33 16 21 C -0.19 -3.23 6.27 -20.17 -0.13 -3.35 16 22 C -0.12 -1.63 6.30 -19.50 -0.12 -1.75 16 23 C 0.09 0.88 7.92 71.26 0.56 1.45 16 24 O -0.33 -5.77 11.14 -54.02 -0.60 -6.38 16 25 C 0.52 11.11 8.59 70.25 0.60 11.71 16 26 O -0.49 -13.67 18.04 19.63 0.35 -13.32 16 27 H 0.26 14.28 8.31 -92.71 -0.77 13.51 16 28 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 29 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 30 H 0.06 2.45 8.14 -2.39 -0.02 2.44 16 31 H 0.06 2.43 8.14 -2.38 -0.02 2.42 16 32 H 0.42 12.36 7.94 -92.71 -0.74 11.62 16 33 H 0.43 5.17 8.30 -92.71 -0.77 4.40 16 34 H 0.15 2.58 6.19 -2.91 -0.02 2.56 16 35 H 0.17 1.04 8.06 -2.91 -0.02 1.01 16 36 H 0.15 1.58 8.06 -2.91 -0.02 1.56 16 37 H 0.14 0.91 8.14 -2.39 -0.02 0.89 16 38 H 0.15 0.57 8.14 -2.39 -0.02 0.55 16 Total: -1.00 -68.98 343.08 1.90 -67.08 By element: Atomic # 1 Polarization: 12.77 SS G_CDS: -0.36 Total: 12.41 kcal Atomic # 6 Polarization: 9.87 SS G_CDS: 4.50 Total: 14.37 kcal Atomic # 7 Polarization: -84.55 SS G_CDS: -3.92 Total: -88.47 kcal Atomic # 8 Polarization: -49.06 SS G_CDS: -0.35 Total: -49.41 kcal Atomic # 14 Polarization: 41.99 SS G_CDS: 2.03 Total: 44.02 kcal Total: -68.98 1.90 -67.08 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117515567.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.721 kcal (2) G-P(sol) polarization free energy of solvation -68.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.68 seconds