Wall clock time and date at job start Tue Mar 31 2020 12:54:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86803 * 119.99870 * 2 1 4 4 H 1.48506 * 109.47014 * 239.99730 * 3 2 1 5 5 H 1.48503 * 109.47043 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47160 * 119.99993 * 3 2 1 7 7 C 1.37877 * 120.00506 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00411 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99669 * 0.02562 * 7 2 1 10 10 C 1.53935 * 113.73364 * 81.23515 * 9 7 2 11 11 N 1.48296 * 86.06285 * 138.12975 * 10 9 7 12 12 C 1.46902 * 111.00409 * 222.41947 * 11 10 9 13 13 C 1.50702 * 109.47267 * 289.35248 * 12 11 10 14 14 C 1.33689 * 125.88837 * 89.71387 * 13 12 11 15 15 N 1.31341 * 115.84929 * 179.82098 * 14 13 12 16 16 C 1.30237 * 117.03022 * 0.48721 * 15 14 13 17 17 C 1.47853 * 125.47243 * 179.71950 * 16 15 14 18 18 C 1.39565 * 120.11269 * 179.74756 * 17 16 15 19 19 C 1.37916 * 119.87679 * 179.78723 * 18 17 16 20 20 C 1.38583 * 120.11706 * 0.47226 * 19 18 17 21 21 F 1.35102 * 119.88253 * 179.76425 * 20 19 18 22 22 C 1.38589 * 120.23638 * 359.77841 * 20 19 18 23 23 C 1.37915 * 120.11663 * 359.97438 * 22 20 19 24 24 S 1.76172 * 109.05273 * 359.73935 * 16 15 14 25 25 C 1.47961 * 90.75572 * 335.31010 * 11 10 9 26 26 H 0.96995 * 120.00309 * 0.02562 * 1 2 3 27 27 H 1.09002 * 112.93816 * 309.66794 * 9 7 2 28 28 H 1.09001 * 113.76001 * 252.50560 * 10 9 7 29 29 H 1.09000 * 113.75996 * 23.86376 * 10 9 7 30 30 H 1.08997 * 109.47246 * 49.35399 * 12 11 10 31 31 H 1.09007 * 109.46957 * 169.35176 * 12 11 10 32 32 H 1.07999 * 122.07413 * 0.02817 * 14 13 12 33 33 H 1.07993 * 120.06254 * 0.02562 * 18 17 16 34 34 H 1.08000 * 119.94194 * 180.22619 * 19 18 17 35 35 H 1.07998 * 119.94338 * 179.97438 * 22 20 19 36 36 H 1.08001 * 120.05866 * 180.02562 * 23 22 20 37 37 H 1.09007 * 113.75652 * 270.36911 * 25 11 10 38 38 H 1.08992 * 113.86038 * 139.01836 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 0.7559 -2.9287 -1.3923 11 7 1.1880 -4.2953 -1.0119 12 6 1.8749 -4.9600 -2.1275 13 6 0.8758 -5.2942 -3.2050 14 6 0.5304 -4.5035 -4.2261 15 7 -0.3611 -4.9957 -5.0555 16 6 -0.8187 -6.1867 -4.7942 17 6 -1.8262 -6.9138 -5.5956 18 6 -2.2340 -8.1929 -5.2143 19 6 -3.1773 -8.8649 -5.9630 20 6 -3.7128 -8.2763 -7.0976 21 9 -4.6331 -8.9408 -7.8302 22 6 -3.3075 -7.0084 -7.4835 23 6 -2.3685 -6.3256 -6.7392 24 16 -0.0446 -6.7920 -3.3320 25 6 2.1611 -3.7399 -0.0455 26 1 -0.4850 0.8400 -0.0004 27 1 0.4835 -2.5465 0.7729 28 1 -0.3212 -2.8279 -1.5258 29 1 1.3294 -2.4995 -2.2139 30 1 2.6375 -4.2949 -2.5327 31 1 2.3447 -5.8766 -1.7705 32 1 0.9604 -3.5222 -4.3625 33 1 -1.8145 -8.6540 -4.3325 34 1 -3.4963 -9.8533 -5.6668 35 1 -3.7277 -6.5543 -8.3688 36 1 -2.0536 -5.3375 -7.0406 37 1 3.1447 -3.5475 -0.4741 38 1 2.2073 -4.2858 0.8967 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001140093035.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:54:10 Heat of formation + Delta-G solvation = 57.467036 kcal Electronic energy + Delta-G solvation = -22364.577622 eV Core-core repulsion = 18828.183420 eV Total energy + Delta-G solvation = -3536.394202 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.090 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.21859 -39.90521 -39.09324 -38.36785 -33.26449 -32.31666 -31.56947 -30.86221 -27.96861 -25.98510 -25.06020 -24.51257 -23.43777 -22.56482 -21.89686 -19.52639 -18.63718 -18.05502 -17.82317 -16.75110 -16.28709 -16.16660 -15.91118 -15.13128 -14.96473 -14.55820 -14.37613 -14.23859 -13.99707 -13.92002 -13.83412 -13.38871 -12.89155 -12.59901 -12.34870 -12.01778 -11.84320 -11.44520 -11.38529 -11.21828 -10.97394 -10.75806 -10.42139 -9.92467 -9.77834 -9.66309 -9.50618 -9.32698 -9.11783 -9.06131 -8.50289 -8.18123 -7.98637 -6.09444 -4.14929 0.07679 0.88604 1.22960 1.30117 1.74945 2.83694 3.26807 3.32698 3.34146 3.41887 3.83456 3.91012 4.36106 4.40708 4.50300 4.76524 4.85103 4.90904 5.00596 5.12176 5.21920 5.29345 5.50889 5.60312 5.71582 5.74468 5.84375 5.85415 5.98587 6.04417 6.25074 6.28383 6.38596 6.47090 6.55410 6.65913 7.06075 7.08669 7.66262 7.72125 7.82143 7.95064 8.29983 8.87409 9.50517 10.99816 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.024019 B = 0.002513 C = 0.002372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.452454 B =11138.101648 C =11800.618550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.067 3.933 3 Si 0.891 3.109 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.521 4.521 8 H 0.057 0.943 9 C 0.041 3.959 10 C 0.016 3.984 11 N -0.487 5.487 12 C 0.092 3.908 13 C -0.170 4.170 14 C 0.034 3.966 15 N -0.453 5.453 16 C 0.083 3.917 17 C -0.023 4.023 18 C -0.073 4.073 19 C -0.150 4.150 20 C 0.106 3.894 21 F -0.138 7.138 22 C -0.153 4.153 23 C -0.047 4.047 24 S 0.104 5.896 25 C -0.001 4.001 26 H 0.263 0.737 27 H 0.059 0.941 28 H 0.067 0.933 29 H 0.055 0.945 30 H 0.062 0.938 31 H 0.078 0.922 32 H 0.175 0.825 33 H 0.136 0.864 34 H 0.142 0.858 35 H 0.141 0.859 36 H 0.147 0.853 37 H 0.058 0.942 38 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.501 -17.096 -12.524 21.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.136 4.136 3 Si 0.718 3.282 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.559 4.559 8 H 0.075 0.925 9 C 0.022 3.978 10 C -0.112 4.112 11 N -0.211 5.211 12 C -0.039 4.039 13 C -0.291 4.291 14 C -0.118 4.118 15 N -0.166 5.166 16 C -0.191 4.191 17 C -0.027 4.027 18 C -0.093 4.093 19 C -0.169 4.169 20 C 0.085 3.915 21 F -0.117 7.117 22 C -0.172 4.172 23 C -0.069 4.069 24 S 0.360 5.640 25 C -0.130 4.130 26 H 0.073 0.927 27 H 0.077 0.923 28 H 0.085 0.915 29 H 0.074 0.926 30 H 0.079 0.921 31 H 0.097 0.903 32 H 0.192 0.808 33 H 0.154 0.846 34 H 0.159 0.841 35 H 0.159 0.841 36 H 0.164 0.836 37 H 0.076 0.924 38 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -4.373 -18.121 -12.163 22.259 hybrid contribution 1.262 2.214 -0.597 2.617 sum -3.111 -15.908 -12.760 20.629 Atomic orbital electron populations 1.69948 1.05984 1.26943 1.49313 1.25011 0.94817 0.99153 0.94608 0.86684 0.79659 0.83138 0.78676 1.20241 1.21219 1.20143 1.21027 0.92716 0.90294 1.51905 0.92461 1.20292 0.93657 0.90986 0.92903 1.24122 1.00123 0.85788 1.01205 1.68774 1.25971 1.17808 1.08519 1.21062 0.92310 1.00321 0.90192 1.25911 1.04742 0.96600 1.01890 1.21565 0.96950 1.01599 0.91680 1.66482 1.11096 1.09608 1.29402 1.25553 1.01918 0.94367 0.97224 1.17879 0.96020 0.93563 0.95232 1.21029 0.96015 0.92981 0.99299 1.20990 0.99111 1.01694 0.95082 1.17861 0.90334 0.91596 0.91679 1.91512 1.63726 1.80281 1.76168 1.21138 1.00007 0.93809 1.02226 1.21173 0.93458 1.00130 0.92120 1.84686 1.36405 1.18796 1.24099 1.24114 0.95284 0.98003 0.95555 0.92747 0.92298 0.91465 0.92627 0.92053 0.90327 0.80772 0.84647 0.84064 0.84088 0.83565 0.92404 0.91327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.15 13.29 55.43 0.74 -24.42 16 2 C 0.07 1.82 5.46 -17.82 -0.10 1.72 16 3 Si 0.89 20.72 29.54 -169.99 -5.02 15.70 16 4 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 5 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 6 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 7 C -0.52 -13.77 8.77 -34.44 -0.30 -14.07 16 8 H 0.06 1.48 7.81 -52.49 -0.41 1.07 16 9 C 0.04 0.99 3.60 -90.84 -0.33 0.66 16 10 C 0.02 0.36 6.73 -2.57 -0.02 0.34 16 11 N -0.49 -9.40 6.26 -239.49 -1.50 -10.89 16 12 C 0.09 1.46 5.35 -4.97 -0.03 1.43 16 13 C -0.17 -2.61 5.75 -35.90 -0.21 -2.82 16 14 C 0.03 0.53 10.74 -19.36 -0.21 0.32 16 15 N -0.45 -6.97 10.14 -11.36 -0.12 -7.09 16 16 C 0.08 1.14 7.35 -14.29 -0.11 1.04 16 17 C -0.02 -0.26 5.87 -104.97 -0.62 -0.88 16 18 C -0.07 -0.68 9.60 -39.20 -0.38 -1.06 16 19 C -0.15 -1.26 10.01 -39.57 -0.40 -1.66 16 20 C 0.11 0.98 7.30 -39.32 -0.29 0.69 16 21 F -0.14 -1.34 17.26 2.25 0.04 -1.30 16 22 C -0.15 -1.37 10.01 -39.57 -0.40 -1.76 16 23 C -0.05 -0.49 9.68 -39.21 -0.38 -0.87 16 24 S 0.10 1.37 22.39 -107.50 -2.41 -1.04 16 25 C 0.00 -0.02 7.53 -2.76 -0.02 -0.04 16 26 H 0.26 7.14 8.31 -40.82 -0.34 6.81 16 27 H 0.06 1.58 8.14 -51.93 -0.42 1.16 16 28 H 0.07 1.61 8.14 -51.93 -0.42 1.18 16 29 H 0.06 1.23 7.74 -51.93 -0.40 0.83 16 30 H 0.06 0.96 7.69 -51.93 -0.40 0.56 16 31 H 0.08 1.12 8.14 -51.92 -0.42 0.69 16 32 H 0.18 2.64 8.06 -52.49 -0.42 2.22 16 33 H 0.14 1.08 7.30 -52.49 -0.38 0.69 16 34 H 0.14 0.87 8.06 -52.49 -0.42 0.45 16 35 H 0.14 0.97 8.06 -52.49 -0.42 0.55 16 36 H 0.15 1.50 7.82 -52.49 -0.41 1.09 16 37 H 0.06 1.10 7.74 -51.92 -0.40 0.70 16 38 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 LS Contribution 345.10 15.07 5.20 5.20 Total: -1.00 -28.77 345.10 -11.33 -40.10 By element: Atomic # 1 Polarization: 5.20 SS G_CDS: -4.50 Total: 0.70 kcal Atomic # 6 Polarization: -13.20 SS G_CDS: -3.76 Total: -16.96 kcal Atomic # 7 Polarization: -41.52 SS G_CDS: -0.88 Total: -42.40 kcal Atomic # 9 Polarization: -1.34 SS G_CDS: 0.04 Total: -1.30 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Atomic # 16 Polarization: 1.37 SS G_CDS: -2.41 Total: -1.04 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -28.77 -11.33 -40.10 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001140093035.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.571 kcal (2) G-P(sol) polarization free energy of solvation -28.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.104 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds