Wall clock time and date at job start Tue Mar 31 2020 12:54:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86803 * 119.99870 * 2 1 4 4 H 1.48506 * 109.47014 * 239.99730 * 3 2 1 5 5 H 1.48503 * 109.47043 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47160 * 119.99993 * 3 2 1 7 7 C 1.37877 * 120.00506 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00411 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99669 * 0.02562 * 7 2 1 10 10 C 1.53935 * 113.73364 * 81.23515 * 9 7 2 11 11 N 1.48296 * 86.06285 * 138.12975 * 10 9 7 12 12 C 1.46902 * 111.00409 * 222.41947 * 11 10 9 13 13 C 1.50702 * 109.47267 * 289.35248 * 12 11 10 14 14 C 1.33689 * 125.88837 * 89.71387 * 13 12 11 15 15 N 1.31341 * 115.84929 * 179.82098 * 14 13 12 16 16 C 1.30237 * 117.03022 * 0.48721 * 15 14 13 17 17 C 1.47853 * 125.47243 * 179.71950 * 16 15 14 18 18 C 1.39565 * 120.11269 * 179.74756 * 17 16 15 19 19 C 1.37916 * 119.87679 * 179.78723 * 18 17 16 20 20 C 1.38583 * 120.11706 * 0.47226 * 19 18 17 21 21 F 1.35102 * 119.88253 * 179.76425 * 20 19 18 22 22 C 1.38589 * 120.23638 * 359.77841 * 20 19 18 23 23 C 1.37915 * 120.11663 * 359.97438 * 22 20 19 24 24 S 1.76172 * 109.05273 * 359.73935 * 16 15 14 25 25 C 1.47961 * 90.75572 * 335.31010 * 11 10 9 26 26 H 0.96995 * 120.00309 * 0.02562 * 1 2 3 27 27 H 1.09002 * 112.93816 * 309.66794 * 9 7 2 28 28 H 1.09001 * 113.76001 * 252.50560 * 10 9 7 29 29 H 1.09000 * 113.75996 * 23.86376 * 10 9 7 30 30 H 1.08997 * 109.47246 * 49.35399 * 12 11 10 31 31 H 1.09007 * 109.46957 * 169.35176 * 12 11 10 32 32 H 1.07999 * 122.07413 * 0.02817 * 14 13 12 33 33 H 1.07993 * 120.06254 * 0.02562 * 18 17 16 34 34 H 1.08000 * 119.94194 * 180.22619 * 19 18 17 35 35 H 1.07998 * 119.94338 * 179.97438 * 22 20 19 36 36 H 1.08001 * 120.05866 * 180.02562 * 23 22 20 37 37 H 1.09007 * 113.75652 * 270.36911 * 25 11 10 38 38 H 1.08992 * 113.86038 * 139.01836 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 0.7559 -2.9287 -1.3923 11 7 1.1880 -4.2953 -1.0119 12 6 1.8749 -4.9600 -2.1275 13 6 0.8758 -5.2942 -3.2050 14 6 0.5304 -4.5035 -4.2261 15 7 -0.3611 -4.9957 -5.0555 16 6 -0.8187 -6.1867 -4.7942 17 6 -1.8262 -6.9138 -5.5956 18 6 -2.2340 -8.1929 -5.2143 19 6 -3.1773 -8.8649 -5.9630 20 6 -3.7128 -8.2763 -7.0976 21 9 -4.6331 -8.9408 -7.8302 22 6 -3.3075 -7.0084 -7.4835 23 6 -2.3685 -6.3256 -6.7392 24 16 -0.0446 -6.7920 -3.3320 25 6 2.1611 -3.7399 -0.0455 26 1 -0.4850 0.8400 -0.0004 27 1 0.4835 -2.5465 0.7729 28 1 -0.3212 -2.8279 -1.5258 29 1 1.3294 -2.4995 -2.2139 30 1 2.6375 -4.2949 -2.5327 31 1 2.3447 -5.8766 -1.7705 32 1 0.9604 -3.5222 -4.3625 33 1 -1.8145 -8.6540 -4.3325 34 1 -3.4963 -9.8533 -5.6668 35 1 -3.7277 -6.5543 -8.3688 36 1 -2.0536 -5.3375 -7.0406 37 1 3.1447 -3.5475 -0.4741 38 1 2.2073 -4.2858 0.8967 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001140093035.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:54:10 Heat of formation + Delta-G solvation = 41.041155 kcal Electronic energy + Delta-G solvation = -22365.289902 eV Core-core repulsion = 18828.183420 eV Total energy + Delta-G solvation = -3537.106482 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.090 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -49.96412 -41.03504 -40.35144 -39.51119 -34.96344 -33.72443 -32.30197 -32.00334 -29.44727 -27.47342 -26.69212 -25.88176 -24.31662 -23.63150 -23.16068 -20.65724 -20.30983 -19.07451 -18.67952 -18.58805 -17.26322 -17.07214 -16.79533 -16.64948 -16.33701 -15.95176 -15.85332 -15.31971 -15.23739 -15.09741 -14.61552 -14.30502 -14.02862 -13.90344 -13.46212 -13.40313 -13.36510 -13.08170 -12.83790 -12.65859 -12.39714 -12.20622 -12.03589 -11.61949 -11.29152 -11.00095 -10.76450 -10.61452 -10.50005 -10.23781 -10.19507 -9.66651 -9.11959 -8.15117 -6.26834 -0.88477 0.17611 0.20434 0.32557 0.63610 1.42927 1.43609 1.51506 1.76540 2.41932 2.59440 2.88475 3.14756 3.16586 3.24733 3.68725 3.73868 3.81990 3.96876 4.06657 4.16719 4.26460 4.30622 4.46171 4.55696 4.62215 4.75994 4.76584 4.83831 4.88669 4.96429 4.98827 5.03033 5.18142 5.22405 5.31032 5.43941 5.62694 5.74623 5.84221 6.28307 6.29037 6.62112 6.82536 7.42044 8.93970 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.024019 B = 0.002513 C = 0.002372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.452454 B =11138.101648 C =11800.618550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.014 3.986 3 Si 0.955 3.045 4 H -0.269 1.269 5 H -0.288 1.288 6 H -0.268 1.268 7 C -0.531 4.531 8 H 0.062 0.938 9 C 0.020 3.980 10 C 0.032 3.968 11 N -0.487 5.487 12 C 0.095 3.905 13 C -0.198 4.198 14 C 0.027 3.973 15 N -0.481 5.481 16 C 0.089 3.911 17 C -0.049 4.049 18 C -0.068 4.068 19 C -0.144 4.144 20 C 0.103 3.897 21 F -0.140 7.140 22 C -0.150 4.150 23 C -0.053 4.053 24 S 0.144 5.856 25 C 0.016 3.984 26 H 0.262 0.738 27 H 0.022 0.978 28 H 0.039 0.961 29 H 0.053 0.947 30 H 0.065 0.935 31 H 0.102 0.898 32 H 0.170 0.830 33 H 0.150 0.850 34 H 0.168 0.832 35 H 0.160 0.840 36 H 0.141 0.859 37 H 0.071 0.929 38 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.986 -18.838 -13.194 23.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.185 4.185 3 Si 0.781 3.219 4 H -0.194 1.194 5 H -0.214 1.214 6 H -0.193 1.193 7 C -0.569 4.569 8 H 0.080 0.920 9 C 0.000 4.000 10 C -0.097 4.097 11 N -0.210 5.210 12 C -0.035 4.035 13 C -0.319 4.319 14 C -0.125 4.125 15 N -0.195 5.195 16 C -0.185 4.185 17 C -0.053 4.053 18 C -0.089 4.089 19 C -0.162 4.162 20 C 0.083 3.917 21 F -0.118 7.118 22 C -0.169 4.169 23 C -0.075 4.075 24 S 0.401 5.599 25 C -0.112 4.112 26 H 0.070 0.930 27 H 0.041 0.959 28 H 0.058 0.942 29 H 0.072 0.928 30 H 0.083 0.917 31 H 0.120 0.880 32 H 0.187 0.813 33 H 0.168 0.832 34 H 0.186 0.814 35 H 0.178 0.822 36 H 0.159 0.841 37 H 0.089 0.911 38 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -3.836 -19.884 -12.824 23.970 hybrid contribution 0.991 2.615 -0.466 2.835 sum -2.844 -17.270 -13.289 21.976 Atomic orbital electron populations 1.70088 1.07560 1.27569 1.50856 1.25821 0.95548 1.02687 0.94477 0.85657 0.78365 0.78864 0.79062 1.19377 1.21362 1.19315 1.21407 0.93119 0.91396 1.51002 0.91964 1.20285 0.94153 0.92472 0.93048 1.23753 0.98283 0.87820 0.99815 1.68661 1.26555 1.15988 1.09751 1.21059 0.92309 1.00922 0.89185 1.25879 1.05862 0.98154 1.02032 1.21603 0.97145 1.01659 0.92106 1.66501 1.12044 1.10757 1.30153 1.26039 1.01309 0.93879 0.97274 1.18042 0.96675 0.94635 0.95945 1.21188 0.95862 0.92089 0.99716 1.21259 0.98105 1.02579 0.94251 1.18037 0.90137 0.91661 0.91871 1.91515 1.63773 1.80275 1.76250 1.21300 0.99327 0.93748 1.02539 1.21192 0.93912 1.00162 0.92201 1.84411 1.35308 1.16982 1.23224 1.23968 0.95032 0.95628 0.96590 0.92961 0.95935 0.94206 0.92841 0.91671 0.87958 0.81333 0.83198 0.81416 0.82213 0.84092 0.91067 0.89770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.93 13.29 21.45 0.28 -53.64 16 2 C 0.01 0.77 5.46 84.66 0.46 1.23 16 3 Si 0.96 42.72 29.54 68.60 2.03 44.75 16 4 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 5 H -0.29 -12.83 7.11 99.48 0.71 -12.13 16 6 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 7 C -0.53 -28.29 8.77 25.60 0.22 -28.07 16 8 H 0.06 3.18 7.81 -2.91 -0.02 3.15 16 9 C 0.02 0.97 3.60 -10.89 -0.04 0.93 16 10 C 0.03 1.47 6.73 86.34 0.58 2.05 16 11 N -0.49 -18.49 6.26 -911.60 -5.71 -24.20 16 12 C 0.10 2.90 5.35 85.56 0.46 3.36 16 13 C -0.20 -5.95 5.75 24.65 0.14 -5.81 16 14 C 0.03 0.86 10.74 83.73 0.90 1.76 16 15 N -0.48 -14.94 10.14 -189.86 -1.93 -16.87 16 16 C 0.09 2.37 7.35 87.48 0.64 3.02 16 17 C -0.05 -1.06 5.87 -20.09 -0.12 -1.18 16 18 C -0.07 -1.12 9.60 22.51 0.22 -0.91 16 19 C -0.14 -2.01 10.01 22.28 0.22 -1.79 16 20 C 0.10 1.67 7.30 22.44 0.16 1.84 16 21 F -0.14 -2.38 17.26 44.97 0.78 -1.61 16 22 C -0.15 -2.44 10.01 22.28 0.22 -2.21 16 23 C -0.05 -1.06 9.68 22.51 0.22 -0.84 16 24 S 0.14 3.57 22.39 -56.49 -1.26 2.31 16 25 C 0.02 0.62 7.53 86.41 0.65 1.27 16 26 H 0.26 14.61 8.31 -92.71 -0.77 13.84 16 27 H 0.02 1.26 8.14 -2.39 -0.02 1.24 16 28 H 0.04 1.99 8.14 -2.39 -0.02 1.97 16 29 H 0.05 2.42 7.74 -2.39 -0.02 2.40 16 30 H 0.07 1.94 7.69 -2.39 -0.02 1.93 16 31 H 0.10 2.63 8.14 -2.38 -0.02 2.61 16 32 H 0.17 5.33 8.06 -2.91 -0.02 5.30 16 33 H 0.15 1.97 7.30 -2.91 -0.02 1.95 16 34 H 0.17 1.44 8.06 -2.91 -0.02 1.42 16 35 H 0.16 1.90 8.06 -2.91 -0.02 1.87 16 36 H 0.14 2.90 7.82 -2.91 -0.02 2.88 16 37 H 0.07 2.57 7.74 -2.38 -0.02 2.56 16 38 H 0.08 3.00 8.14 -2.39 -0.02 2.98 16 Total: -1.00 -62.58 345.10 0.22 -62.36 By element: Atomic # 1 Polarization: 11.17 SS G_CDS: 1.08 Total: 12.25 kcal Atomic # 6 Polarization: -30.30 SS G_CDS: 4.95 Total: -25.36 kcal Atomic # 7 Polarization: -87.36 SS G_CDS: -7.35 Total: -94.70 kcal Atomic # 9 Polarization: -2.38 SS G_CDS: 0.78 Total: -1.61 kcal Atomic # 14 Polarization: 42.72 SS G_CDS: 2.03 Total: 44.75 kcal Atomic # 16 Polarization: 3.57 SS G_CDS: -1.26 Total: 2.31 kcal Total: -62.58 0.22 -62.36 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001140093035.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.400 kcal (2) G-P(sol) polarization free energy of solvation -62.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.359 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds