Wall clock time and date at job start Tue Mar 31 2020 12:43:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 119.99406 * 2 1 4 4 H 1.48503 * 109.47002 * 269.99458 * 3 2 1 5 5 H 1.48496 * 109.47711 * 29.99806 * 3 2 1 6 6 H 1.48503 * 109.46897 * 150.00335 * 3 2 1 7 7 C 1.37872 * 120.00025 * 179.97438 * 2 1 3 8 8 C 1.51337 * 120.88782 * 179.78258 * 7 2 1 9 9 C 1.53232 * 108.68817 * 231.22378 * 8 7 2 10 10 C 1.52956 * 109.40174 * 305.48622 * 9 8 7 11 11 H 1.09000 * 109.41173 * 303.48505 * 10 9 8 12 12 N 1.46502 * 109.41045 * 183.70128 * 10 9 8 13 13 C 1.37819 * 120.00009 * 84.64580 * 12 10 9 14 14 N 1.32652 * 120.99518 * 359.97438 * 13 12 10 15 15 C 1.32492 * 121.47935 * 179.97438 * 14 13 12 16 16 Cl 1.73599 * 118.46560 * 180.02562 * 15 14 13 17 17 N 1.31385 * 123.06483 * 0.02562 * 15 14 13 18 18 C 1.33894 * 120.33710 * 359.97438 * 17 15 14 19 19 C 1.40250 * 122.79395 * 180.02562 * 18 17 15 20 20 N 1.31348 * 119.81425 * 179.18013 * 19 18 17 21 21 C 1.32410 * 122.81392 * 0.82600 * 20 19 18 22 22 C 1.36562 * 121.77208 * 359.44931 * 21 20 19 23 23 C 1.39986 * 118.54467 * 359.97438 * 22 21 20 24 24 C 1.52955 * 109.82240 * 63.59759 * 10 9 8 25 25 C 1.51266 * 120.85319 * 0.02562 * 7 2 1 26 26 H 0.96996 * 120.00661 * 0.02562 * 1 2 3 27 27 H 1.09005 * 109.46205 * 111.51742 * 8 7 2 28 28 H 1.09004 * 109.80140 * 351.13221 * 8 7 2 29 29 H 1.09000 * 109.48586 * 185.50064 * 9 8 7 30 30 H 1.09000 * 109.49144 * 65.46585 * 9 8 7 31 31 H 0.97003 * 120.00134 * 264.63958 * 12 10 9 32 32 H 1.07996 * 120.09259 * 359.96224 * 19 18 17 33 33 H 1.07994 * 119.11297 * 179.46635 * 21 20 19 34 34 H 1.07998 * 120.72917 * 179.97438 * 22 21 20 35 35 H 1.09001 * 109.48702 * 176.42014 * 24 10 9 36 36 H 1.09003 * 109.49443 * 56.38202 * 24 10 9 37 37 H 1.09002 * 109.62649 * 8.95896 * 25 7 2 38 38 H 1.09001 * 109.62544 * 248.58243 * 25 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4464 2.6528 0.6999 6 1 3.5466 1.4403 0.7000 7 6 2.0045 -1.1940 0.0005 8 6 3.5177 -1.2175 -0.0044 9 6 3.9908 -2.1367 -1.1354 10 6 3.3394 -3.5117 -0.9788 11 1 3.5734 -3.9132 0.0072 12 7 3.8588 -4.4165 -2.0073 13 6 5.0422 -5.0912 -1.7977 14 7 5.7272 -4.9356 -0.6724 15 6 6.8655 -5.5797 -0.4607 16 17 7.6972 -5.3183 1.0405 17 7 7.3941 -6.4070 -1.3338 18 6 6.7840 -6.6365 -2.5034 19 6 7.3016 -7.5090 -3.4718 20 7 6.6457 -7.7033 -4.5931 21 6 5.5036 -7.0938 -4.8712 22 6 4.9218 -6.2222 -3.9954 23 6 5.5598 -5.9755 -2.7741 24 6 1.8225 -3.3873 -1.1302 25 6 1.2678 -2.5151 0.0005 26 1 -0.4851 0.8400 -0.0004 27 1 3.8781 -1.5978 0.9515 28 1 3.9021 -0.2103 -0.1661 29 1 5.0749 -2.2406 -1.0900 30 1 3.7067 -1.7072 -2.0961 31 1 3.3698 -4.5409 -2.8357 32 1 8.2304 -8.0293 -3.2908 33 1 5.0189 -7.2914 -5.8158 34 1 3.9900 -5.7340 -4.2398 35 1 1.3697 -4.3776 -1.0812 36 1 1.5893 -2.9281 -2.0909 37 1 0.2038 -2.3410 -0.1598 38 1 1.4165 -3.0173 0.9565 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157050063.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:43:34 Heat of formation + Delta-G solvation = 62.208193 kcal Electronic energy + Delta-G solvation = -23777.474636 eV Core-core repulsion = 20259.162282 eV Total energy + Delta-G solvation = -3518.312355 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.094 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.73970 -38.95225 -37.99226 -36.76497 -35.43134 -33.03298 -32.73868 -31.49365 -30.30035 -29.76997 -27.42511 -25.21343 -24.84206 -22.86073 -21.84245 -21.67336 -19.85156 -19.39473 -18.34052 -17.83558 -16.51515 -16.05728 -15.73693 -15.39556 -15.28340 -14.60491 -14.52522 -14.35601 -13.80569 -13.53713 -13.13600 -13.08423 -12.75026 -12.28887 -12.13915 -11.73946 -11.45213 -11.43453 -11.16406 -11.10611 -10.89178 -10.79874 -10.33778 -10.19869 -10.14029 -10.10146 -9.79460 -9.39113 -9.27824 -9.08146 -8.75923 -8.56941 -7.92510 -6.20887 -4.12419 0.03655 0.39944 1.38503 1.59548 2.85071 2.87192 3.20485 3.30169 3.32105 3.83591 3.87665 4.09076 4.17879 4.25329 4.30021 4.65135 4.74773 4.98933 5.07721 5.41137 5.44497 5.51778 5.63930 5.72913 5.96874 6.10517 6.29207 6.34596 6.49421 6.53836 6.61833 6.73400 6.83168 6.98237 7.11798 7.27650 7.34868 7.52065 7.58576 7.61098 7.69762 7.98041 8.25597 8.84638 9.44112 10.88487 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.016147 B = 0.003788 C = 0.003299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1733.628255 B = 7390.669223 C = 8485.009853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.078 3.922 3 Si 0.888 3.112 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.266 1.266 7 C -0.492 4.492 8 C -0.011 4.011 9 C -0.112 4.112 10 C 0.152 3.848 11 H 0.091 0.909 12 N -0.669 5.669 13 C 0.497 3.503 14 N -0.574 5.574 15 C 0.427 3.573 16 Cl 0.022 6.978 17 N -0.541 5.541 18 C 0.150 3.850 19 C 0.141 3.859 20 N -0.451 5.451 21 C 0.055 3.945 22 C -0.105 4.105 23 C -0.179 4.179 24 C -0.116 4.116 25 C 0.015 3.985 26 H 0.265 0.735 27 H 0.022 0.978 28 H 0.032 0.968 29 H 0.039 0.961 30 H 0.051 0.949 31 H 0.410 0.590 32 H 0.176 0.824 33 H 0.161 0.839 34 H 0.140 0.860 35 H 0.037 0.963 36 H 0.056 0.944 37 H 0.062 0.938 38 H 0.008 0.992 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.024 -12.117 -6.786 17.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.125 4.125 3 Si 0.716 3.284 4 H -0.204 1.204 5 H -0.215 1.215 6 H -0.191 1.191 7 C -0.511 4.511 8 C -0.049 4.049 9 C -0.151 4.151 10 C 0.051 3.949 11 H 0.109 0.891 12 N -0.295 5.295 13 C 0.239 3.761 14 N -0.306 5.306 15 C 0.131 3.869 16 Cl 0.050 6.950 17 N -0.267 5.267 18 C 0.022 3.978 19 C -0.032 4.032 20 N -0.160 5.160 21 C -0.091 4.091 22 C -0.127 4.127 23 C -0.193 4.193 24 C -0.155 4.155 25 C -0.023 4.023 26 H 0.075 0.925 27 H 0.040 0.960 28 H 0.050 0.950 29 H 0.058 0.942 30 H 0.069 0.931 31 H 0.247 0.753 32 H 0.193 0.807 33 H 0.178 0.822 34 H 0.158 0.842 35 H 0.056 0.944 36 H 0.075 0.925 37 H 0.081 0.919 38 H 0.026 0.974 Dipole moment (debyes) X Y Z Total from point charges 10.580 -12.291 -6.386 17.430 hybrid contribution -0.533 1.485 -0.334 1.612 sum 10.047 -10.807 -6.720 16.214 Atomic orbital electron populations 1.69819 1.06173 1.27117 1.49465 1.24827 0.94703 0.98625 0.94350 0.86663 0.80069 0.83226 0.78466 1.20446 1.21546 1.19084 1.20021 0.89315 0.91393 1.50350 1.19706 0.96519 0.94944 0.93781 1.21922 0.97393 0.94700 1.01097 1.21416 0.94744 0.88773 0.90006 0.89128 1.45464 1.18880 1.43333 1.21864 1.18426 0.86092 0.84899 0.86707 1.67400 1.09888 1.30846 1.22439 1.22543 0.86972 0.88009 0.89405 1.98432 1.75410 1.94794 1.26399 1.68198 1.34954 1.20936 1.02600 1.19613 0.90410 0.95285 0.92541 1.22916 0.99219 0.94097 0.86938 1.67472 1.07664 1.21588 1.19291 1.22215 0.92348 0.94604 0.99960 1.21687 1.00271 0.98194 0.92561 1.19203 0.99413 1.03062 0.97665 1.21984 0.91739 0.98954 1.02801 1.19311 0.98795 0.92686 0.91500 0.92471 0.95969 0.94964 0.94209 0.93059 0.75270 0.80698 0.82191 0.84231 0.94403 0.92548 0.91930 0.97389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.41 12.73 55.43 0.71 -23.70 16 2 C 0.08 2.03 5.46 -17.82 -0.10 1.93 16 3 Si 0.89 20.39 27.27 -169.99 -4.64 15.75 16 4 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 5 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.27 -5.98 6.47 56.52 0.37 -5.61 16 7 C -0.49 -12.17 5.53 -98.89 -0.55 -12.71 16 8 C -0.01 -0.25 5.58 -27.45 -0.15 -0.40 16 9 C -0.11 -2.14 5.52 -26.63 -0.15 -2.28 16 10 C 0.15 2.63 2.38 -67.98 -0.16 2.47 16 11 H 0.09 1.72 7.58 -51.93 -0.39 1.33 16 12 N -0.67 -9.26 5.14 -53.56 -0.28 -9.53 16 13 C 0.50 7.27 7.53 -155.02 -1.17 6.10 16 14 N -0.57 -9.37 9.29 -10.61 -0.10 -9.47 16 15 C 0.43 6.60 8.14 -91.90 -0.75 5.85 16 16 Cl 0.02 0.30 29.24 -51.86 -1.52 -1.22 16 17 N -0.54 -7.95 10.42 -9.70 -0.10 -8.05 16 18 C 0.15 2.01 6.63 -84.88 -0.56 1.45 16 19 C 0.14 1.59 11.28 -17.00 -0.19 1.40 16 20 N -0.45 -5.02 10.29 -13.13 -0.14 -5.16 16 21 C 0.05 0.52 11.08 -17.91 -0.20 0.32 16 22 C -0.10 -1.04 9.61 -39.53 -0.38 -1.42 16 23 C -0.18 -2.32 5.76 -106.65 -0.61 -2.93 16 24 C -0.12 -2.13 5.41 -26.65 -0.14 -2.28 16 25 C 0.01 0.34 5.96 -27.50 -0.16 0.18 16 26 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 27 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.03 0.72 4.81 -51.93 -0.25 0.47 16 29 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 31 H 0.41 4.50 6.98 -40.82 -0.28 4.21 16 32 H 0.18 1.56 8.06 -52.49 -0.42 1.14 16 33 H 0.16 1.03 8.06 -52.49 -0.42 0.61 16 34 H 0.14 1.00 6.73 -52.49 -0.35 0.64 16 35 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.06 1.58 7.07 -51.93 -0.37 1.21 16 38 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 LS Contribution 327.38 15.07 4.93 4.93 Total: -1.00 -28.27 327.38 -10.60 -38.87 By element: Atomic # 1 Polarization: 4.11 SS G_CDS: -4.20 Total: -0.10 kcal Atomic # 6 Polarization: 2.94 SS G_CDS: -5.28 Total: -2.33 kcal Atomic # 7 Polarization: -56.00 SS G_CDS: 0.10 Total: -55.91 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -4.64 Total: 15.75 kcal Atomic # 17 Polarization: 0.30 SS G_CDS: -1.52 Total: -1.22 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -28.27 -10.60 -38.87 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157050063.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.076 kcal (2) G-P(sol) polarization free energy of solvation -28.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.868 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds