Wall clock time and date at job start Tue Mar 31 2020 12:43:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 119.99406 * 2 1 4 4 H 1.48503 * 109.47002 * 269.99458 * 3 2 1 5 5 H 1.48496 * 109.47711 * 29.99806 * 3 2 1 6 6 H 1.48503 * 109.46897 * 150.00335 * 3 2 1 7 7 C 1.37872 * 120.00025 * 179.97438 * 2 1 3 8 8 C 1.51337 * 120.88782 * 179.78258 * 7 2 1 9 9 C 1.53232 * 108.68817 * 231.22378 * 8 7 2 10 10 C 1.52956 * 109.40174 * 305.48622 * 9 8 7 11 11 H 1.09000 * 109.41173 * 303.48505 * 10 9 8 12 12 N 1.46502 * 109.41045 * 183.70128 * 10 9 8 13 13 C 1.37819 * 120.00009 * 84.64580 * 12 10 9 14 14 N 1.32652 * 120.99518 * 359.97438 * 13 12 10 15 15 C 1.32492 * 121.47935 * 179.97438 * 14 13 12 16 16 Cl 1.73599 * 118.46560 * 180.02562 * 15 14 13 17 17 N 1.31385 * 123.06483 * 0.02562 * 15 14 13 18 18 C 1.33894 * 120.33710 * 359.97438 * 17 15 14 19 19 C 1.40250 * 122.79395 * 180.02562 * 18 17 15 20 20 N 1.31348 * 119.81425 * 179.18013 * 19 18 17 21 21 C 1.32410 * 122.81392 * 0.82600 * 20 19 18 22 22 C 1.36562 * 121.77208 * 359.44931 * 21 20 19 23 23 C 1.39986 * 118.54467 * 359.97438 * 22 21 20 24 24 C 1.52955 * 109.82240 * 63.59759 * 10 9 8 25 25 C 1.51266 * 120.85319 * 0.02562 * 7 2 1 26 26 H 0.96996 * 120.00661 * 0.02562 * 1 2 3 27 27 H 1.09005 * 109.46205 * 111.51742 * 8 7 2 28 28 H 1.09004 * 109.80140 * 351.13221 * 8 7 2 29 29 H 1.09000 * 109.48586 * 185.50064 * 9 8 7 30 30 H 1.09000 * 109.49144 * 65.46585 * 9 8 7 31 31 H 0.97003 * 120.00134 * 264.63958 * 12 10 9 32 32 H 1.07996 * 120.09259 * 359.96224 * 19 18 17 33 33 H 1.07994 * 119.11297 * 179.46635 * 21 20 19 34 34 H 1.07998 * 120.72917 * 179.97438 * 22 21 20 35 35 H 1.09001 * 109.48702 * 176.42014 * 24 10 9 36 36 H 1.09003 * 109.49443 * 56.38202 * 24 10 9 37 37 H 1.09002 * 109.62649 * 8.95896 * 25 7 2 38 38 H 1.09001 * 109.62544 * 248.58243 * 25 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4464 2.6528 0.6999 6 1 3.5466 1.4403 0.7000 7 6 2.0045 -1.1940 0.0005 8 6 3.5177 -1.2175 -0.0044 9 6 3.9908 -2.1367 -1.1354 10 6 3.3394 -3.5117 -0.9788 11 1 3.5734 -3.9132 0.0072 12 7 3.8588 -4.4165 -2.0073 13 6 5.0422 -5.0912 -1.7977 14 7 5.7272 -4.9356 -0.6724 15 6 6.8655 -5.5797 -0.4607 16 17 7.6972 -5.3183 1.0405 17 7 7.3941 -6.4070 -1.3338 18 6 6.7840 -6.6365 -2.5034 19 6 7.3016 -7.5090 -3.4718 20 7 6.6457 -7.7033 -4.5931 21 6 5.5036 -7.0938 -4.8712 22 6 4.9218 -6.2222 -3.9954 23 6 5.5598 -5.9755 -2.7741 24 6 1.8225 -3.3873 -1.1302 25 6 1.2678 -2.5151 0.0005 26 1 -0.4851 0.8400 -0.0004 27 1 3.8781 -1.5978 0.9515 28 1 3.9021 -0.2103 -0.1661 29 1 5.0749 -2.2406 -1.0900 30 1 3.7067 -1.7072 -2.0961 31 1 3.3698 -4.5409 -2.8357 32 1 8.2304 -8.0293 -3.2908 33 1 5.0189 -7.2914 -5.8158 34 1 3.9900 -5.7340 -4.2398 35 1 1.3697 -4.3776 -1.0812 36 1 1.5893 -2.9281 -2.0909 37 1 0.2038 -2.3410 -0.1598 38 1 1.4165 -3.0173 0.9565 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157050063.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:43:33 Heat of formation + Delta-G solvation = 46.206311 kcal Electronic energy + Delta-G solvation = -23778.168530 eV Core-core repulsion = 20259.162282 eV Total energy + Delta-G solvation = -3519.006248 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.094 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.72370 -39.97613 -39.27488 -37.86759 -36.78475 -34.48796 -33.79903 -32.85468 -31.58136 -31.17747 -29.00431 -26.26253 -25.84299 -24.17065 -23.34369 -23.13994 -21.37832 -20.42761 -19.42330 -18.87133 -18.02129 -17.25321 -16.80510 -16.58628 -16.39973 -16.31859 -15.46292 -15.34099 -15.15633 -14.74678 -14.58071 -14.38320 -14.05497 -13.92447 -13.72364 -13.28934 -12.79571 -12.67926 -12.54709 -12.51019 -12.36228 -12.15301 -11.89019 -11.78387 -11.47169 -11.12988 -11.10527 -10.94261 -10.72129 -10.54682 -10.29087 -10.23051 -8.97953 -8.17945 -6.11548 -0.90212 -0.57140 0.32516 0.64061 1.36825 1.42645 1.49798 1.75046 1.90590 2.40394 2.88540 2.89886 3.09559 3.13348 3.32647 3.45461 3.70155 3.82339 3.97911 4.13950 4.24552 4.47268 4.64240 4.68555 4.73777 4.75592 4.88032 4.94267 5.04956 5.14542 5.21297 5.25375 5.26848 5.55194 5.57124 5.63675 5.73612 5.79776 5.86297 6.30785 6.35001 6.76256 6.93047 6.94757 7.47094 8.92535 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.016147 B = 0.003788 C = 0.003299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1733.628255 B = 7390.669223 C = 8485.009853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.028 3.972 3 Si 0.934 3.066 4 H -0.272 1.272 5 H -0.294 1.294 6 H -0.259 1.259 7 C -0.497 4.497 8 C -0.014 4.014 9 C -0.103 4.103 10 C 0.171 3.829 11 H 0.073 0.927 12 N -0.661 5.661 13 C 0.491 3.509 14 N -0.601 5.601 15 C 0.409 3.591 16 Cl 0.025 6.975 17 N -0.543 5.543 18 C 0.123 3.877 19 C 0.141 3.859 20 N -0.460 5.460 21 C 0.064 3.936 22 C -0.102 4.102 23 C -0.181 4.181 24 C -0.103 4.103 25 C 0.010 3.990 26 H 0.263 0.737 27 H 0.016 0.984 28 H 0.029 0.971 29 H 0.044 0.956 30 H 0.054 0.946 31 H 0.426 0.574 32 H 0.193 0.807 33 H 0.197 0.803 34 H 0.172 0.828 35 H 0.061 0.939 36 H 0.060 0.940 37 H 0.033 0.967 38 H -0.001 1.001 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.951 -13.345 -9.063 19.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.171 4.171 3 Si 0.761 3.239 4 H -0.198 1.198 5 H -0.220 1.220 6 H -0.184 1.184 7 C -0.517 4.517 8 C -0.052 4.052 9 C -0.142 4.142 10 C 0.067 3.933 11 H 0.092 0.908 12 N -0.290 5.290 13 C 0.233 3.767 14 N -0.333 5.333 15 C 0.112 3.888 16 Cl 0.053 6.947 17 N -0.268 5.268 18 C -0.004 4.004 19 C -0.030 4.030 20 N -0.169 5.169 21 C -0.082 4.082 22 C -0.124 4.124 23 C -0.195 4.195 24 C -0.141 4.141 25 C -0.028 4.028 26 H 0.072 0.928 27 H 0.035 0.965 28 H 0.048 0.952 29 H 0.062 0.938 30 H 0.073 0.927 31 H 0.266 0.734 32 H 0.210 0.790 33 H 0.214 0.786 34 H 0.189 0.811 35 H 0.080 0.920 36 H 0.078 0.922 37 H 0.052 0.948 38 H 0.017 0.983 Dipole moment (debyes) X Y Z Total from point charges 11.553 -13.559 -8.692 19.820 hybrid contribution -0.790 1.731 0.319 1.930 sum 10.762 -11.828 -8.373 18.050 Atomic orbital electron populations 1.69939 1.07464 1.27462 1.51862 1.25496 0.95246 1.01434 0.94899 0.85901 0.79170 0.80155 0.78644 1.19785 1.22029 1.18380 1.20589 0.90821 0.91935 1.48321 1.19704 0.94888 0.95721 0.94882 1.21765 0.97688 0.95098 0.99691 1.20885 0.93712 0.88372 0.90329 0.90850 1.44979 1.19080 1.43107 1.21818 1.18542 0.86001 0.85257 0.86874 1.67328 1.10584 1.31775 1.23627 1.22639 0.87286 0.88832 0.90020 1.98421 1.75276 1.94836 1.26158 1.68179 1.35123 1.20466 1.03035 1.19949 0.91207 0.96543 0.92723 1.23191 0.99769 0.93526 0.86478 1.67579 1.08425 1.21903 1.18985 1.22868 0.91391 0.92999 1.00895 1.22038 1.01156 0.98096 0.91114 1.19330 0.99363 1.02449 0.98381 1.21726 0.92468 0.99171 1.00743 1.19265 0.97303 0.93215 0.93014 0.92774 0.96544 0.95228 0.93760 0.92731 0.73361 0.79037 0.78610 0.81101 0.92009 0.92161 0.94806 0.98257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -52.15 12.73 21.45 0.27 -51.88 16 2 C 0.03 1.47 5.46 84.65 0.46 1.93 16 3 Si 0.93 41.97 27.27 68.60 1.87 43.84 16 4 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 5 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 6 H -0.26 -11.22 6.47 99.48 0.64 -10.58 16 7 C -0.50 -24.70 5.53 -16.15 -0.09 -24.79 16 8 C -0.01 -0.60 5.58 30.13 0.17 -0.43 16 9 C -0.10 -3.79 5.52 30.66 0.17 -3.62 16 10 C 0.17 5.61 2.38 44.96 0.11 5.72 16 11 H 0.07 2.72 7.58 -2.39 -0.02 2.70 16 12 N -0.66 -16.58 5.14 -323.37 -1.66 -18.25 16 13 C 0.49 13.42 7.53 133.99 1.01 14.43 16 14 N -0.60 -19.11 9.29 -187.49 -1.74 -20.85 16 15 C 0.41 12.42 8.14 180.80 1.47 13.89 16 16 Cl 0.03 0.68 29.24 -2.72 -0.08 0.60 16 17 N -0.54 -15.45 10.42 -184.59 -1.92 -17.37 16 18 C 0.12 3.08 6.63 40.18 0.27 3.35 16 19 C 0.14 2.87 11.28 85.25 0.96 3.83 16 20 N -0.46 -8.71 10.29 -195.46 -2.01 -10.72 16 21 C 0.06 0.94 11.08 84.21 0.93 1.88 16 22 C -0.10 -1.61 9.61 22.30 0.21 -1.39 16 23 C -0.18 -4.23 5.76 -21.18 -0.12 -4.36 16 24 C -0.10 -3.61 5.41 30.65 0.17 -3.45 16 25 C 0.01 0.46 5.96 30.09 0.18 0.64 16 26 H 0.26 14.16 8.31 -92.71 -0.77 13.39 16 27 H 0.02 0.72 8.14 -2.38 -0.02 0.70 16 28 H 0.03 1.29 4.81 -2.39 -0.01 1.28 16 29 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 30 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 31 H 0.43 7.78 6.98 -92.71 -0.65 7.13 16 32 H 0.19 3.04 8.06 -2.91 -0.02 3.01 16 33 H 0.20 1.43 8.06 -2.91 -0.02 1.40 16 34 H 0.17 1.56 6.73 -2.91 -0.02 1.54 16 35 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 36 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 37 H 0.03 1.74 7.07 -2.39 -0.02 1.72 16 38 H 0.00 -0.05 8.14 -2.39 -0.02 -0.07 16 Total: -1.00 -62.08 327.38 1.03 -61.05 By element: Atomic # 1 Polarization: 5.55 SS G_CDS: 0.41 Total: 5.96 kcal Atomic # 6 Polarization: 1.74 SS G_CDS: 5.90 Total: 7.63 kcal Atomic # 7 Polarization: -112.01 SS G_CDS: -7.07 Total: -119.08 kcal Atomic # 14 Polarization: 41.97 SS G_CDS: 1.87 Total: 43.84 kcal Atomic # 17 Polarization: 0.68 SS G_CDS: -0.08 Total: 0.60 kcal Total: -62.08 1.03 -61.05 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157050063.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.253 kcal (2) G-P(sol) polarization free energy of solvation -62.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.047 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds