Wall clock time and date at job start Tue Mar 31 2020 12:43:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86805 * 120.00165 * 2 1 4 4 H 1.48493 * 109.47163 * 270.00439 * 3 2 1 5 5 H 1.48500 * 109.46726 * 30.00621 * 3 2 1 6 6 H 1.48504 * 109.46927 * 150.00270 * 3 2 1 7 7 C 1.37879 * 120.00089 * 180.02562 * 2 1 3 8 8 C 1.51264 * 120.85152 * 180.02562 * 7 2 1 9 9 C 1.53230 * 108.54060 * 231.32414 * 8 7 2 10 10 C 1.52955 * 109.40686 * 305.37674 * 9 8 7 11 11 H 1.08993 * 109.41280 * 303.49105 * 10 9 8 12 12 N 1.46500 * 109.41432 * 183.63055 * 10 9 8 13 13 C 1.37768 * 120.00055 * 155.00216 * 12 10 9 14 14 N 1.32757 * 120.92979 * 359.71673 * 13 12 10 15 15 C 1.32247 * 121.35175 * 179.76695 * 14 13 12 16 16 N 1.31242 * 123.05873 * 0.53256 * 15 14 13 17 17 C 1.34097 * 120.58232 * 359.73757 * 16 15 14 18 18 N 1.33329 * 121.77958 * 179.97438 * 17 16 15 19 19 C 1.31484 * 121.21130 * 180.02562 * 18 17 16 20 20 Cl 1.73600 * 119.11897 * 179.97438 * 19 18 17 21 21 C 1.39263 * 121.75499 * 359.97438 * 19 18 17 22 22 C 1.36844 * 119.86021 * 0.02562 * 21 19 18 23 23 C 1.40156 * 118.02679 * 359.97438 * 22 21 19 24 24 C 1.53381 * 109.91008 * 63.61144 * 10 9 8 25 25 C 1.51270 * 120.84854 * 0.02562 * 7 2 1 26 26 H 0.97004 * 120.00027 * 359.97438 * 1 2 3 27 27 H 1.09001 * 109.62865 * 351.04644 * 8 7 2 28 28 H 1.09001 * 109.62558 * 111.61586 * 8 7 2 29 29 H 1.09007 * 109.47522 * 65.35690 * 9 8 7 30 30 H 1.09003 * 109.48254 * 185.39094 * 9 8 7 31 31 H 0.97004 * 119.99899 * 334.99951 * 12 10 9 32 32 H 1.07998 * 118.46984 * 180.29947 * 15 14 13 33 33 H 1.08001 * 120.06835 * 179.97438 * 21 19 18 34 34 H 1.07994 * 120.98929 * 180.02562 * 22 21 19 35 35 H 1.08993 * 109.73630 * 176.50716 * 24 10 9 36 36 H 1.08997 * 109.45237 * 56.32900 * 24 10 9 37 37 H 1.09002 * 109.62532 * 248.38858 * 25 7 2 38 38 H 1.09001 * 109.62715 * 8.76545 * 25 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6526 0.7002 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 6 3.5170 -1.2165 0.0000 9 6 3.9911 -2.1307 -1.1346 10 6 3.3403 -3.5067 -0.9842 11 1 3.5738 -3.9123 0.0002 12 7 3.8594 -4.4065 -2.0172 13 6 3.8520 -5.7687 -1.8114 14 7 3.3840 -6.2855 -0.6817 15 6 3.3687 -7.5920 -0.4772 16 7 3.8161 -8.4593 -1.3547 17 6 4.3159 -8.0462 -2.5285 18 7 4.7773 -8.9062 -3.4369 19 6 5.2655 -8.4888 -4.5842 20 17 5.8521 -9.6561 -5.7275 21 6 5.3245 -7.1353 -4.9066 22 6 4.8667 -6.2023 -4.0164 23 6 4.3479 -6.6555 -2.7958 24 6 1.8190 -3.3844 -1.1364 25 6 1.2677 -2.5152 -0.0017 26 1 -0.4850 0.8401 0.0004 27 1 3.8982 -0.2078 -0.1589 28 1 3.8771 -1.6008 0.9544 29 1 3.7072 -1.6971 -2.0935 30 1 5.0753 -2.2344 -1.0890 31 1 4.2083 -4.0431 -2.8462 32 1 2.9730 -7.9623 0.4570 33 1 5.7314 -6.8226 -5.8569 34 1 4.9033 -5.1480 -4.2477 35 1 1.3638 -4.3737 -1.0906 36 1 1.5862 -2.9210 -2.0951 37 1 1.4192 -3.0197 0.9525 38 1 0.2032 -2.3406 -0.1585 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157050132.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:43:41 Heat of formation + Delta-G solvation = 65.834299 kcal Electronic energy + Delta-G solvation = -23549.045952 eV Core-core repulsion = 20030.890837 eV Total energy + Delta-G solvation = -3518.155115 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.094 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.67879 -38.93309 -37.84105 -36.86423 -35.50434 -33.25294 -32.17653 -31.87121 -30.36997 -29.77738 -27.31854 -25.32229 -24.76155 -22.67844 -22.05273 -21.48421 -19.88886 -19.63328 -18.18598 -17.66212 -16.58034 -16.18711 -15.95867 -15.65717 -14.90736 -14.53938 -14.29529 -14.04113 -13.98204 -13.56803 -13.35418 -13.10379 -12.54313 -12.31988 -11.98483 -11.79170 -11.73254 -11.67194 -11.19480 -11.13740 -10.94161 -10.88126 -10.42066 -10.14665 -10.09249 -9.86992 -9.69102 -9.56090 -9.13458 -8.93616 -8.81780 -8.57548 -7.99208 -6.20442 -4.12753 0.03910 0.34487 1.33733 1.75143 2.67975 2.91662 3.17617 3.27148 3.27914 3.64342 4.01417 4.03460 4.18627 4.27630 4.34390 4.47304 4.74666 5.02644 5.08821 5.26827 5.41435 5.46094 5.65230 5.73412 5.95109 6.09585 6.29112 6.38363 6.50451 6.59373 6.60337 6.78694 6.87015 6.93869 7.12179 7.20567 7.25442 7.51592 7.60500 7.69488 7.75071 8.27035 8.33152 8.86128 9.43146 10.88848 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.027426 B = 0.002859 C = 0.002702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.670660 B = 9792.177810 C =10361.559807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.077 3.923 3 Si 0.887 3.113 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.267 1.267 7 C -0.493 4.493 8 C -0.010 4.010 9 C -0.116 4.116 10 C 0.154 3.846 11 H 0.091 0.909 12 N -0.675 5.675 13 C 0.495 3.505 14 N -0.590 5.590 15 C 0.385 3.615 16 N -0.562 5.562 17 C 0.393 3.607 18 N -0.474 5.474 19 C 0.250 3.750 20 Cl -0.022 7.022 21 C -0.195 4.195 22 C 0.006 3.994 23 C -0.260 4.260 24 C -0.112 4.112 25 C 0.014 3.986 26 H 0.265 0.735 27 H 0.035 0.965 28 H 0.021 0.979 29 H 0.057 0.943 30 H 0.039 0.961 31 H 0.405 0.595 32 H 0.202 0.798 33 H 0.153 0.847 34 H 0.148 0.852 35 H 0.038 0.962 36 H 0.048 0.952 37 H 0.008 0.992 38 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.695 -11.088 -9.518 18.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.126 4.126 3 Si 0.715 3.285 4 H -0.204 1.204 5 H -0.215 1.215 6 H -0.192 1.192 7 C -0.512 4.512 8 C -0.048 4.048 9 C -0.155 4.155 10 C 0.052 3.948 11 H 0.109 0.891 12 N -0.301 5.301 13 C 0.237 3.763 14 N -0.319 5.319 15 C 0.093 3.907 16 N -0.285 5.285 17 C 0.148 3.852 18 N -0.188 5.188 19 C 0.069 3.931 20 Cl 0.007 6.993 21 C -0.217 4.217 22 C -0.022 4.022 23 C -0.272 4.272 24 C -0.151 4.151 25 C -0.024 4.024 26 H 0.075 0.925 27 H 0.053 0.947 28 H 0.040 0.960 29 H 0.076 0.924 30 H 0.058 0.942 31 H 0.242 0.758 32 H 0.219 0.781 33 H 0.170 0.830 34 H 0.166 0.834 35 H 0.057 0.943 36 H 0.066 0.934 37 H 0.026 0.974 38 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 10.088 -12.218 -8.350 17.911 hybrid contribution 0.913 2.071 -1.516 2.724 sum 11.001 -10.148 -9.867 17.926 Atomic orbital electron populations 1.69831 1.06191 1.27064 1.49244 1.24854 0.94712 0.98575 0.94445 0.86677 0.79991 0.83380 0.78408 1.20445 1.21533 1.19173 1.20020 0.89155 0.91624 1.50443 1.19683 0.96926 0.94872 0.93346 1.21924 0.96903 0.94626 1.02041 1.21457 0.95236 0.88168 0.89952 0.89111 1.45435 1.61463 1.01667 1.21485 1.18696 0.84158 0.85881 0.87546 1.68208 1.26490 1.15765 1.21413 1.24818 0.86284 0.83154 0.96443 1.68415 1.19299 1.38599 1.02184 1.18790 0.90590 0.84818 0.91013 1.66840 1.12810 1.38057 1.01072 1.21876 0.92912 0.88547 0.89756 1.98428 1.85362 1.59968 1.55587 1.21423 1.06531 0.90906 1.02830 1.21193 0.90158 1.00368 0.90523 1.19907 1.11627 0.97003 0.98638 1.22042 0.92537 0.98789 1.01701 1.19323 0.98691 0.92522 0.91899 0.92463 0.94687 0.96038 0.92429 0.94248 0.75798 0.78120 0.82967 0.83446 0.94338 0.93366 0.97360 0.92288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.43 12.73 55.43 0.71 -23.73 16 2 C 0.08 2.00 5.46 -17.82 -0.10 1.90 16 3 Si 0.89 19.85 27.27 -169.99 -4.64 15.22 16 4 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 5 H -0.29 -6.57 7.11 56.52 0.40 -6.16 16 6 H -0.27 -5.75 6.46 56.52 0.37 -5.39 16 7 C -0.49 -12.07 5.52 -98.92 -0.55 -12.61 16 8 C -0.01 -0.21 5.59 -27.49 -0.15 -0.37 16 9 C -0.12 -1.99 5.41 -26.64 -0.14 -2.13 16 10 C 0.15 2.58 2.38 -67.76 -0.16 2.42 16 11 H 0.09 1.66 7.57 -51.93 -0.39 1.27 16 12 N -0.67 -9.06 5.13 -53.36 -0.27 -9.33 16 13 C 0.49 7.08 7.51 -155.01 -1.16 5.91 16 14 N -0.59 -9.05 9.33 -13.59 -0.13 -9.18 16 15 C 0.39 5.35 12.21 -92.24 -1.13 4.22 16 16 N -0.56 -8.79 10.50 -14.28 -0.15 -8.94 16 17 C 0.39 6.03 7.67 -157.82 -1.21 4.83 16 18 N -0.47 -7.06 10.40 -9.72 -0.10 -7.16 16 19 C 0.25 2.93 7.26 -17.32 -0.13 2.80 16 20 Cl -0.02 -0.22 29.08 -51.86 -1.51 -1.72 16 21 C -0.19 -1.78 9.79 -39.71 -0.39 -2.17 16 22 C 0.01 0.06 9.63 -39.37 -0.38 -0.32 16 23 C -0.26 -3.44 5.76 -106.64 -0.61 -4.06 16 24 C -0.11 -2.18 5.55 -26.43 -0.15 -2.33 16 25 C 0.01 0.32 5.95 -27.50 -0.16 0.15 16 26 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 27 H 0.03 0.73 4.78 -51.93 -0.25 0.48 16 28 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.97 8.14 -51.92 -0.42 0.55 16 30 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.41 4.23 6.89 -40.82 -0.28 3.95 16 32 H 0.20 2.05 8.06 -52.49 -0.42 1.63 16 33 H 0.15 0.89 8.06 -52.49 -0.42 0.46 16 34 H 0.15 0.94 6.66 -52.49 -0.35 0.59 16 35 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 37 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 38 H 0.06 1.54 7.07 -51.93 -0.37 1.18 16 LS Contribution 327.05 15.07 4.93 4.93 Total: -1.00 -29.64 327.05 -11.77 -41.41 By element: Atomic # 1 Polarization: 4.44 SS G_CDS: -4.19 Total: 0.25 kcal Atomic # 6 Polarization: 4.67 SS G_CDS: -6.42 Total: -1.75 kcal Atomic # 7 Polarization: -58.39 SS G_CDS: 0.05 Total: -58.34 kcal Atomic # 14 Polarization: 19.85 SS G_CDS: -4.64 Total: 15.22 kcal Atomic # 17 Polarization: -0.22 SS G_CDS: -1.51 Total: -1.72 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -29.64 -11.77 -41.41 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157050132.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.245 kcal (2) G-P(sol) polarization free energy of solvation -29.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.411 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds