Wall clock time and date at job start Tue Mar 31 2020 12:43:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86805 * 120.00165 * 2 1 4 4 H 1.48493 * 109.47163 * 270.00439 * 3 2 1 5 5 H 1.48500 * 109.46726 * 30.00621 * 3 2 1 6 6 H 1.48504 * 109.46927 * 150.00270 * 3 2 1 7 7 C 1.37879 * 120.00089 * 180.02562 * 2 1 3 8 8 C 1.51264 * 120.85152 * 180.02562 * 7 2 1 9 9 C 1.53230 * 108.54060 * 231.32414 * 8 7 2 10 10 C 1.52955 * 109.40686 * 305.37674 * 9 8 7 11 11 H 1.08993 * 109.41280 * 303.49105 * 10 9 8 12 12 N 1.46500 * 109.41432 * 183.63055 * 10 9 8 13 13 C 1.37768 * 120.00055 * 155.00216 * 12 10 9 14 14 N 1.32757 * 120.92979 * 359.71673 * 13 12 10 15 15 C 1.32247 * 121.35175 * 179.76695 * 14 13 12 16 16 N 1.31242 * 123.05873 * 0.53256 * 15 14 13 17 17 C 1.34097 * 120.58232 * 359.73757 * 16 15 14 18 18 N 1.33329 * 121.77958 * 179.97438 * 17 16 15 19 19 C 1.31484 * 121.21130 * 180.02562 * 18 17 16 20 20 Cl 1.73600 * 119.11897 * 179.97438 * 19 18 17 21 21 C 1.39263 * 121.75499 * 359.97438 * 19 18 17 22 22 C 1.36844 * 119.86021 * 0.02562 * 21 19 18 23 23 C 1.40156 * 118.02679 * 359.97438 * 22 21 19 24 24 C 1.53381 * 109.91008 * 63.61144 * 10 9 8 25 25 C 1.51270 * 120.84854 * 0.02562 * 7 2 1 26 26 H 0.97004 * 120.00027 * 359.97438 * 1 2 3 27 27 H 1.09001 * 109.62865 * 351.04644 * 8 7 2 28 28 H 1.09001 * 109.62558 * 111.61586 * 8 7 2 29 29 H 1.09007 * 109.47522 * 65.35690 * 9 8 7 30 30 H 1.09003 * 109.48254 * 185.39094 * 9 8 7 31 31 H 0.97004 * 119.99899 * 334.99951 * 12 10 9 32 32 H 1.07998 * 118.46984 * 180.29947 * 15 14 13 33 33 H 1.08001 * 120.06835 * 179.97438 * 21 19 18 34 34 H 1.07994 * 120.98929 * 180.02562 * 22 21 19 35 35 H 1.08993 * 109.73630 * 176.50716 * 24 10 9 36 36 H 1.08997 * 109.45237 * 56.32900 * 24 10 9 37 37 H 1.09002 * 109.62532 * 248.38858 * 25 7 2 38 38 H 1.09001 * 109.62715 * 8.76545 * 25 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6526 0.7002 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 6 3.5170 -1.2165 0.0000 9 6 3.9911 -2.1307 -1.1346 10 6 3.3403 -3.5067 -0.9842 11 1 3.5738 -3.9123 0.0002 12 7 3.8594 -4.4065 -2.0172 13 6 3.8520 -5.7687 -1.8114 14 7 3.3840 -6.2855 -0.6817 15 6 3.3687 -7.5920 -0.4772 16 7 3.8161 -8.4593 -1.3547 17 6 4.3159 -8.0462 -2.5285 18 7 4.7773 -8.9062 -3.4369 19 6 5.2655 -8.4888 -4.5842 20 17 5.8521 -9.6561 -5.7275 21 6 5.3245 -7.1353 -4.9066 22 6 4.8667 -6.2023 -4.0164 23 6 4.3479 -6.6555 -2.7958 24 6 1.8190 -3.3844 -1.1364 25 6 1.2677 -2.5152 -0.0017 26 1 -0.4850 0.8401 0.0004 27 1 3.8982 -0.2078 -0.1589 28 1 3.8771 -1.6008 0.9544 29 1 3.7072 -1.6971 -2.0935 30 1 5.0753 -2.2344 -1.0890 31 1 4.2083 -4.0431 -2.8462 32 1 2.9730 -7.9623 0.4570 33 1 5.7314 -6.8226 -5.8569 34 1 4.9033 -5.1480 -4.2477 35 1 1.3638 -4.3737 -1.0906 36 1 1.5862 -2.9210 -2.0951 37 1 1.4192 -3.0197 0.9525 38 1 0.2032 -2.3406 -0.1585 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157050132.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:43:40 Heat of formation + Delta-G solvation = 49.426796 kcal Electronic energy + Delta-G solvation = -23549.757435 eV Core-core repulsion = 20030.890837 eV Total energy + Delta-G solvation = -3518.866598 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.094 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.66598 -39.98214 -39.10722 -37.69740 -36.83833 -34.59220 -33.33576 -33.13601 -31.55574 -31.39635 -28.85348 -26.28185 -25.80052 -24.00569 -23.56072 -22.90146 -21.34226 -20.68939 -19.23949 -18.70425 -17.96362 -17.41664 -16.97291 -16.69012 -16.34782 -16.15084 -15.28852 -15.20055 -14.96923 -14.77135 -14.59018 -14.31104 -14.07413 -13.98379 -13.47130 -13.23311 -12.75923 -12.64379 -12.60566 -12.51710 -12.43222 -12.17744 -11.88534 -11.78811 -11.38110 -11.11805 -11.05089 -10.79885 -10.56881 -10.52254 -10.40082 -10.03658 -9.11302 -8.14228 -6.09594 -0.87474 -0.58902 0.49872 0.77409 1.41333 1.45674 1.53750 1.75331 1.83518 2.43275 2.71082 2.99068 3.07154 3.14410 3.30524 3.46932 3.65441 3.88136 4.03162 4.13770 4.22240 4.48327 4.53288 4.67482 4.73511 4.88294 4.98784 4.99903 5.02424 5.12633 5.24786 5.25813 5.34244 5.58433 5.60997 5.68008 5.78678 5.84453 5.93489 6.20025 6.36525 6.67139 6.98216 7.30056 7.49114 8.96850 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.027426 B = 0.002859 C = 0.002702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.670660 B = 9792.177810 C =10361.559807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.019 3.981 3 Si 0.943 3.057 4 H -0.270 1.270 5 H -0.300 1.300 6 H -0.250 1.250 7 C -0.499 4.499 8 C -0.016 4.016 9 C -0.108 4.108 10 C 0.172 3.828 11 H 0.077 0.923 12 N -0.665 5.665 13 C 0.490 3.510 14 N -0.615 5.615 15 C 0.380 3.620 16 N -0.586 5.586 17 C 0.366 3.634 18 N -0.512 5.512 19 C 0.241 3.759 20 Cl -0.009 7.009 21 C -0.177 4.177 22 C 0.013 3.987 23 C -0.263 4.263 24 C -0.098 4.098 25 C 0.011 3.989 26 H 0.262 0.738 27 H 0.040 0.960 28 H 0.022 0.978 29 H 0.065 0.935 30 H 0.074 0.926 31 H 0.423 0.577 32 H 0.227 0.773 33 H 0.194 0.806 34 H 0.189 0.811 35 H 0.035 0.965 36 H 0.043 0.957 37 H -0.003 1.003 38 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.578 -10.637 -11.682 20.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.179 4.179 3 Si 0.769 3.231 4 H -0.195 1.195 5 H -0.227 1.227 6 H -0.174 1.174 7 C -0.518 4.518 8 C -0.054 4.054 9 C -0.146 4.146 10 C 0.068 3.932 11 H 0.095 0.905 12 N -0.293 5.293 13 C 0.233 3.767 14 N -0.344 5.344 15 C 0.088 3.912 16 N -0.310 5.310 17 C 0.121 3.879 18 N -0.226 5.226 19 C 0.062 3.938 20 Cl 0.020 6.980 21 C -0.199 4.199 22 C -0.015 4.015 23 C -0.275 4.275 24 C -0.137 4.137 25 C -0.027 4.027 26 H 0.071 0.929 27 H 0.058 0.942 28 H 0.040 0.960 29 H 0.084 0.916 30 H 0.093 0.907 31 H 0.263 0.737 32 H 0.243 0.757 33 H 0.211 0.789 34 H 0.206 0.794 35 H 0.053 0.947 36 H 0.062 0.938 37 H 0.015 0.985 38 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges 13.021 -11.803 -10.558 20.502 hybrid contribution 0.023 1.751 -0.890 1.965 sum 13.044 -10.052 -11.447 20.056 Atomic orbital electron populations 1.69996 1.07960 1.27443 1.52036 1.25672 0.95285 1.02020 0.94887 0.85772 0.79227 0.79301 0.78766 1.19502 1.22663 1.17359 1.20653 0.91470 0.91470 1.48216 1.19714 0.94250 0.96309 0.95091 1.21773 0.98910 0.93375 1.00574 1.20948 0.92906 0.88920 0.90415 0.90527 1.44962 1.61899 1.00885 1.21564 1.18799 0.84140 0.86104 0.87699 1.68210 1.27330 1.16462 1.22420 1.25266 0.86054 0.82756 0.97075 1.68394 1.19997 1.39536 1.03031 1.19018 0.91574 0.86035 0.91233 1.66793 1.14423 1.39044 1.02374 1.22349 0.92184 0.90136 0.89180 1.98433 1.85019 1.59890 1.54679 1.21872 1.04650 0.89359 1.04006 1.21662 0.88567 1.02491 0.88785 1.19936 1.11964 0.95792 0.99805 1.21799 0.95031 0.97444 0.99436 1.19260 0.96842 0.93621 0.93025 0.92938 0.94203 0.96005 0.91616 0.90724 0.73697 0.75734 0.78881 0.79439 0.94654 0.93836 0.98470 0.96101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.40 12.73 21.45 0.27 -53.12 16 2 C 0.02 1.01 5.46 84.66 0.46 1.47 16 3 Si 0.94 40.42 27.27 68.60 1.87 42.30 16 4 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 5 H -0.30 -13.24 7.11 99.48 0.71 -12.53 16 6 H -0.25 -9.88 6.46 99.48 0.64 -9.24 16 7 C -0.50 -24.39 5.52 -16.17 -0.09 -24.48 16 8 C -0.02 -0.62 5.59 30.10 0.17 -0.45 16 9 C -0.11 -3.31 5.41 30.66 0.17 -3.14 16 10 C 0.17 5.41 2.38 45.10 0.11 5.51 16 11 H 0.08 2.69 7.57 -2.39 -0.02 2.67 16 12 N -0.66 -15.80 5.13 -322.73 -1.66 -17.46 16 13 C 0.49 13.08 7.51 133.95 1.01 14.09 16 14 N -0.62 -18.48 9.33 -196.90 -1.84 -20.32 16 15 C 0.38 10.54 12.21 180.91 2.21 12.75 16 16 N -0.59 -18.40 10.50 -199.09 -2.09 -20.49 16 17 C 0.37 10.97 7.67 135.01 1.03 12.00 16 18 N -0.51 -14.79 10.40 -184.67 -1.92 -16.71 16 19 C 0.24 5.10 7.26 84.99 0.62 5.71 16 20 Cl -0.01 -0.15 29.08 -2.72 -0.08 -0.23 16 21 C -0.18 -2.51 9.79 22.19 0.22 -2.29 16 22 C 0.01 0.19 9.63 22.41 0.22 0.41 16 23 C -0.26 -6.40 5.76 -21.17 -0.12 -6.53 16 24 C -0.10 -3.80 5.55 30.79 0.17 -3.63 16 25 C 0.01 0.51 5.95 30.10 0.18 0.69 16 26 H 0.26 14.28 8.31 -92.71 -0.77 13.51 16 27 H 0.04 1.53 4.78 -2.39 -0.01 1.52 16 28 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.07 1.94 8.14 -2.38 -0.02 1.92 16 30 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 31 H 0.42 6.90 6.89 -92.71 -0.64 6.26 16 32 H 0.23 4.60 8.06 -2.91 -0.02 4.58 16 33 H 0.19 1.12 8.06 -2.91 -0.02 1.10 16 34 H 0.19 1.28 6.66 -2.91 -0.02 1.26 16 35 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 36 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 37 H 0.00 -0.15 8.14 -2.39 -0.02 -0.17 16 38 H 0.02 1.13 7.07 -2.39 -0.02 1.11 16 Total: -1.00 -67.91 327.05 1.32 -66.59 By element: Atomic # 1 Polarization: 6.90 SS G_CDS: 0.42 Total: 7.32 kcal Atomic # 6 Polarization: 5.78 SS G_CDS: 6.34 Total: 12.12 kcal Atomic # 7 Polarization: -120.86 SS G_CDS: -7.23 Total: -128.09 kcal Atomic # 14 Polarization: 40.42 SS G_CDS: 1.87 Total: 42.30 kcal Atomic # 17 Polarization: -0.15 SS G_CDS: -0.08 Total: -0.23 kcal Total: -67.91 1.32 -66.59 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157050132.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.015 kcal (2) G-P(sol) polarization free energy of solvation -67.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.589 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds