Wall clock time and date at job start Tue Mar 31 2020 12:43:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86796 * 119.99980 * 2 1 4 4 H 1.48498 * 109.47062 * 239.99868 * 3 2 1 5 5 H 1.48497 * 109.47198 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.47410 * 119.99806 * 3 2 1 7 7 C 1.37878 * 120.00098 * 179.97438 * 2 1 3 8 8 C 1.51268 * 120.85222 * 0.02562 * 7 2 1 9 9 C 1.53225 * 108.53990 * 231.32447 * 8 7 2 10 10 C 1.52960 * 109.40131 * 305.37151 * 9 8 7 11 11 H 1.08998 * 109.41075 * 303.55792 * 10 9 8 12 12 N 1.46507 * 109.41092 * 183.70493 * 10 9 8 13 13 C 1.38442 * 120.00160 * 155.00158 * 12 10 9 14 14 N 1.32271 * 120.67379 * 359.97438 * 13 12 10 15 15 N 1.28096 * 123.35439 * 180.02562 * 14 13 12 16 16 C 1.31520 * 123.51643 * 0.02562 * 15 14 13 17 17 Cl 1.73599 * 120.54044 * 179.97438 * 16 15 14 18 18 C 1.40549 * 118.91068 * 0.25517 * 16 15 14 19 19 C 1.40188 * 123.69592 * 179.72019 * 18 16 15 20 20 C 1.36420 * 118.41575 * 180.02562 * 19 18 16 21 21 N 1.32558 * 121.93144 * 0.02562 * 20 19 18 22 22 C 1.31490 * 122.84050 * 359.48570 * 21 20 19 23 23 C 1.39779 * 119.63395 * 0.74489 * 22 21 20 24 24 C 1.52952 * 109.81861 * 63.59999 * 10 9 8 25 25 C 1.51272 * 120.85271 * 179.97438 * 7 2 1 26 26 H 0.96994 * 119.99919 * 359.97438 * 1 2 3 27 27 H 1.09000 * 109.62600 * 111.60754 * 8 7 2 28 28 H 1.09009 * 109.78006 * 351.13514 * 8 7 2 29 29 H 1.09002 * 109.48333 * 185.39280 * 9 8 7 30 30 H 1.09001 * 109.48356 * 65.35044 * 9 8 7 31 31 H 0.97002 * 119.99362 * 335.00199 * 12 10 9 32 32 H 1.08009 * 120.79325 * 0.04520 * 19 18 16 33 33 H 1.08000 * 119.03649 * 179.97438 * 20 19 18 34 34 H 1.07995 * 120.17890 * 180.02562 * 22 21 20 35 35 H 1.08998 * 109.48589 * 56.37936 * 24 10 9 36 36 H 1.09000 * 109.48234 * 176.42054 * 24 10 9 37 37 H 1.08996 * 109.62708 * 248.39558 * 25 7 2 38 38 H 1.09000 * 109.62195 * 8.96411 * 25 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 6 1.2678 -2.5152 0.0005 9 6 1.8230 -3.3826 1.1351 10 6 3.3400 -3.5069 0.9840 11 1 3.5740 -3.9111 -0.0009 12 7 3.8599 -4.4076 2.0159 13 6 5.0490 -5.0855 1.8080 14 7 5.7262 -4.9305 0.6825 15 7 6.8300 -5.5319 0.4361 16 6 7.4055 -6.3659 1.2746 17 17 8.9032 -7.1398 0.8605 18 6 6.7848 -6.6249 2.5087 19 6 7.3059 -7.4988 3.4731 20 6 6.6127 -7.6709 4.6354 21 7 5.4715 -7.0392 4.8712 22 6 4.9313 -6.1995 4.0156 23 6 5.5621 -5.9584 2.7918 24 6 3.9907 -2.1310 1.1351 25 6 3.5171 -1.2165 0.0000 26 1 -0.4850 0.8400 0.0004 27 1 1.4201 -3.0193 -0.9538 28 1 0.2029 -2.3437 0.1582 29 1 1.3707 -4.3733 1.0899 30 1 1.5899 -2.9197 2.0940 31 1 3.3710 -4.5288 2.8449 32 1 8.2342 -8.0232 3.3001 33 1 7.0048 -8.3422 5.3851 34 1 3.9994 -5.7077 4.2523 35 1 3.7064 -1.6977 2.0940 36 1 5.0748 -2.2347 1.0900 37 1 3.8772 -1.6006 -0.9544 38 1 3.8983 -0.2078 0.1591 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157050241.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:43:44 Heat of formation + Delta-G solvation = 69.392220 kcal Electronic energy + Delta-G solvation = -23711.387304 eV Core-core repulsion = 20193.386473 eV Total energy + Delta-G solvation = -3518.000832 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.094 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.80678 -39.12829 -37.99076 -36.89163 -35.17863 -33.23076 -32.58864 -31.36090 -30.30867 -29.66314 -27.24382 -25.68261 -24.93219 -22.96149 -21.86093 -21.62356 -19.80083 -19.24635 -18.22688 -17.91807 -16.86535 -16.02395 -15.75566 -15.71160 -15.21736 -14.73769 -14.51079 -14.36929 -13.87505 -13.52538 -13.09535 -12.79665 -12.58943 -12.28332 -12.18181 -11.79590 -11.66906 -11.39940 -11.23416 -11.02814 -10.75195 -10.64396 -10.51261 -10.45376 -10.26671 -10.10978 -9.82725 -9.42636 -9.39122 -9.06593 -8.76840 -8.54011 -7.83798 -6.17440 -4.08834 -0.05000 0.23651 1.39728 1.57076 2.79224 2.92470 3.25895 3.32870 3.34652 3.63323 3.76860 3.97130 4.13057 4.17542 4.33623 4.35924 4.64868 4.94000 5.06203 5.11391 5.20276 5.42537 5.49749 5.63420 5.69813 6.02229 6.05372 6.34180 6.43082 6.54019 6.60490 6.76184 6.86101 6.98079 7.16092 7.28994 7.38720 7.41714 7.56012 7.63288 7.73921 8.29188 8.80052 8.87947 9.47561 10.92110 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.020572 B = 0.003326 C = 0.003052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1360.748129 B = 8415.436323 C = 9172.542572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.078 3.922 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.292 1.292 6 H -0.275 1.275 7 C -0.492 4.492 8 C 0.015 3.985 9 C -0.116 4.116 10 C 0.154 3.846 11 H 0.090 0.910 12 N -0.675 5.675 13 C 0.404 3.596 14 N -0.314 5.314 15 N -0.169 5.169 16 C 0.056 3.944 17 Cl -0.015 7.015 18 C 0.008 3.992 19 C -0.152 4.152 20 C 0.112 3.888 21 N -0.484 5.484 22 C 0.174 3.826 23 C -0.176 4.176 24 C -0.113 4.113 25 C -0.007 4.007 26 H 0.266 0.734 27 H 0.008 0.992 28 H 0.062 0.938 29 H 0.038 0.962 30 H 0.056 0.944 31 H 0.406 0.594 32 H 0.151 0.849 33 H 0.164 0.836 34 H 0.169 0.831 35 H 0.051 0.949 36 H 0.040 0.960 37 H 0.024 0.976 38 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.288 -14.834 8.886 21.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.125 4.125 3 Si 0.719 3.281 4 H -0.199 1.199 5 H -0.218 1.218 6 H -0.200 1.200 7 C -0.511 4.511 8 C -0.023 4.023 9 C -0.155 4.155 10 C 0.052 3.948 11 H 0.108 0.892 12 N -0.302 5.302 13 C 0.150 3.850 14 N -0.165 5.165 15 N -0.006 5.006 16 C -0.130 4.130 17 Cl 0.012 6.988 18 C -0.006 4.006 19 C -0.174 4.174 20 C -0.035 4.035 21 N -0.194 5.194 22 C 0.004 3.996 23 C -0.188 4.188 24 C -0.152 4.152 25 C -0.046 4.046 26 H 0.076 0.924 27 H 0.026 0.974 28 H 0.081 0.919 29 H 0.056 0.944 30 H 0.075 0.925 31 H 0.244 0.756 32 H 0.169 0.831 33 H 0.181 0.819 34 H 0.186 0.814 35 H 0.070 0.930 36 H 0.058 0.942 37 H 0.042 0.958 38 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 11.802 -14.064 8.016 20.034 hybrid contribution 0.851 0.273 0.952 1.306 sum 12.654 -13.792 8.968 20.754 Atomic orbital electron populations 1.69811 1.06159 1.27203 1.49467 1.24826 0.94717 0.98588 0.94346 0.86657 0.79409 0.82933 0.79102 1.19867 1.21840 1.20031 1.20014 0.89308 0.91447 1.50369 1.19321 0.98751 0.92695 0.91522 1.21987 0.91751 0.98935 1.02788 1.21383 0.94751 0.88802 0.89849 0.89207 1.45381 1.18893 1.44183 1.21728 1.20221 0.88005 0.86724 0.90060 1.73023 1.03232 1.23198 1.17004 1.72159 1.01987 1.00806 1.25678 1.22923 0.94082 1.02711 0.93317 1.98369 1.28545 1.78154 1.93715 1.18362 0.92939 0.95222 0.94074 1.21871 1.02174 0.99168 0.94179 1.22503 0.89808 0.95673 0.95554 1.67600 1.11551 1.07291 1.32949 1.22946 0.97789 0.91789 0.87080 1.19402 0.98081 1.02730 0.98587 1.21935 0.97440 0.94771 1.01074 1.19591 0.96532 0.94531 0.93906 0.92433 0.97358 0.91933 0.94378 0.92507 0.75624 0.83088 0.81857 0.81358 0.92983 0.94172 0.95768 0.95505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.67 12.74 55.43 0.71 -23.97 16 2 C 0.08 2.07 5.46 -17.82 -0.10 1.97 16 3 Si 0.89 20.81 26.80 -169.99 -4.56 16.26 16 4 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 7 C -0.49 -12.35 5.51 -98.92 -0.55 -12.89 16 8 C 0.01 0.35 5.96 -27.49 -0.16 0.18 16 9 C -0.12 -2.16 5.40 -26.64 -0.14 -2.30 16 10 C 0.15 2.70 2.38 -67.97 -0.16 2.54 16 11 H 0.09 1.73 7.57 -51.93 -0.39 1.34 16 12 N -0.67 -9.41 5.17 -53.59 -0.28 -9.69 16 13 C 0.40 5.94 7.59 -154.89 -1.18 4.77 16 14 N -0.31 -5.42 10.33 31.43 0.32 -5.09 16 15 N -0.17 -2.80 11.39 33.16 0.38 -2.42 16 16 C 0.06 0.77 7.45 -16.81 -0.13 0.65 16 17 Cl -0.02 -0.17 28.05 -51.86 -1.45 -1.63 16 18 C 0.01 0.09 5.76 -106.81 -0.62 -0.52 16 19 C -0.15 -1.39 9.58 -39.50 -0.38 -1.77 16 20 C 0.11 0.95 11.07 -17.89 -0.20 0.76 16 21 N -0.48 -5.04 10.30 -13.22 -0.14 -5.18 16 22 C 0.17 1.81 10.82 -17.12 -0.19 1.62 16 23 C -0.18 -2.21 5.76 -106.72 -0.62 -2.82 16 24 C -0.11 -2.20 5.52 -26.62 -0.15 -2.35 16 25 C -0.01 -0.17 5.60 -27.46 -0.15 -0.32 16 26 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 27 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 28 H 0.06 1.59 7.08 -51.92 -0.37 1.22 16 29 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.41 4.43 6.98 -40.82 -0.28 4.15 16 32 H 0.15 1.04 7.32 -52.48 -0.38 0.65 16 33 H 0.16 0.84 8.06 -52.49 -0.42 0.41 16 34 H 0.17 1.30 6.71 -52.49 -0.35 0.95 16 35 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 37 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 38 H 0.03 0.60 5.17 -51.93 -0.27 0.34 16 LS Contribution 326.02 15.07 4.91 4.91 Total: -1.00 -29.18 326.02 -8.95 -38.14 By element: Atomic # 1 Polarization: 3.31 SS G_CDS: -4.14 Total: -0.84 kcal Atomic # 6 Polarization: -5.78 SS G_CDS: -4.71 Total: -10.49 kcal Atomic # 7 Polarization: -47.35 SS G_CDS: 1.00 Total: -46.35 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -4.56 Total: 16.26 kcal Atomic # 17 Polarization: -0.17 SS G_CDS: -1.45 Total: -1.63 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -29.18 -8.95 -38.14 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157050241.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.528 kcal (2) G-P(sol) polarization free energy of solvation -29.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.135 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds