Wall clock time and date at job start Tue Mar 31 2020 12:43:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86796 * 119.99980 * 2 1 4 4 H 1.48498 * 109.47062 * 239.99868 * 3 2 1 5 5 H 1.48497 * 109.47198 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.47410 * 119.99806 * 3 2 1 7 7 C 1.37878 * 120.00098 * 179.97438 * 2 1 3 8 8 C 1.51268 * 120.85222 * 0.02562 * 7 2 1 9 9 C 1.53225 * 108.53990 * 231.32447 * 8 7 2 10 10 C 1.52960 * 109.40131 * 305.37151 * 9 8 7 11 11 H 1.08998 * 109.41075 * 303.55792 * 10 9 8 12 12 N 1.46507 * 109.41092 * 183.70493 * 10 9 8 13 13 C 1.38442 * 120.00160 * 155.00158 * 12 10 9 14 14 N 1.32271 * 120.67379 * 359.97438 * 13 12 10 15 15 N 1.28096 * 123.35439 * 180.02562 * 14 13 12 16 16 C 1.31520 * 123.51643 * 0.02562 * 15 14 13 17 17 Cl 1.73599 * 120.54044 * 179.97438 * 16 15 14 18 18 C 1.40549 * 118.91068 * 0.25517 * 16 15 14 19 19 C 1.40188 * 123.69592 * 179.72019 * 18 16 15 20 20 C 1.36420 * 118.41575 * 180.02562 * 19 18 16 21 21 N 1.32558 * 121.93144 * 0.02562 * 20 19 18 22 22 C 1.31490 * 122.84050 * 359.48570 * 21 20 19 23 23 C 1.39779 * 119.63395 * 0.74489 * 22 21 20 24 24 C 1.52952 * 109.81861 * 63.59999 * 10 9 8 25 25 C 1.51272 * 120.85271 * 179.97438 * 7 2 1 26 26 H 0.96994 * 119.99919 * 359.97438 * 1 2 3 27 27 H 1.09000 * 109.62600 * 111.60754 * 8 7 2 28 28 H 1.09009 * 109.78006 * 351.13514 * 8 7 2 29 29 H 1.09002 * 109.48333 * 185.39280 * 9 8 7 30 30 H 1.09001 * 109.48356 * 65.35044 * 9 8 7 31 31 H 0.97002 * 119.99362 * 335.00199 * 12 10 9 32 32 H 1.08009 * 120.79325 * 0.04520 * 19 18 16 33 33 H 1.08000 * 119.03649 * 179.97438 * 20 19 18 34 34 H 1.07995 * 120.17890 * 180.02562 * 22 21 20 35 35 H 1.08998 * 109.48589 * 56.37936 * 24 10 9 36 36 H 1.09000 * 109.48234 * 176.42054 * 24 10 9 37 37 H 1.08996 * 109.62708 * 248.39558 * 25 7 2 38 38 H 1.09000 * 109.62195 * 8.96411 * 25 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 6 1.2678 -2.5152 0.0005 9 6 1.8230 -3.3826 1.1351 10 6 3.3400 -3.5069 0.9840 11 1 3.5740 -3.9111 -0.0009 12 7 3.8599 -4.4076 2.0159 13 6 5.0490 -5.0855 1.8080 14 7 5.7262 -4.9305 0.6825 15 7 6.8300 -5.5319 0.4361 16 6 7.4055 -6.3659 1.2746 17 17 8.9032 -7.1398 0.8605 18 6 6.7848 -6.6249 2.5087 19 6 7.3059 -7.4988 3.4731 20 6 6.6127 -7.6709 4.6354 21 7 5.4715 -7.0392 4.8712 22 6 4.9313 -6.1995 4.0156 23 6 5.5621 -5.9584 2.7918 24 6 3.9907 -2.1310 1.1351 25 6 3.5171 -1.2165 0.0000 26 1 -0.4850 0.8400 0.0004 27 1 1.4201 -3.0193 -0.9538 28 1 0.2029 -2.3437 0.1582 29 1 1.3707 -4.3733 1.0899 30 1 1.5899 -2.9197 2.0940 31 1 3.3710 -4.5288 2.8449 32 1 8.2342 -8.0232 3.3001 33 1 7.0048 -8.3422 5.3851 34 1 3.9994 -5.7077 4.2523 35 1 3.7064 -1.6977 2.0940 36 1 5.0748 -2.2347 1.0900 37 1 3.8772 -1.6006 -0.9544 38 1 3.8983 -0.2078 0.1591 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157050241.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:43:43 Heat of formation + Delta-G solvation = 51.882765 kcal Electronic energy + Delta-G solvation = -23712.146571 eV Core-core repulsion = 20193.386473 eV Total energy + Delta-G solvation = -3518.760099 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.094 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.75319 -40.07193 -39.34623 -37.91552 -36.57134 -34.21234 -34.08241 -32.51091 -31.68255 -31.17159 -28.83257 -26.61449 -25.92597 -24.19656 -23.32752 -23.22533 -21.35067 -20.21398 -19.30397 -18.92041 -18.14558 -17.47331 -16.78514 -16.62366 -16.42007 -16.38847 -15.58462 -15.26021 -15.11788 -14.74984 -14.62607 -14.38705 -13.99501 -13.76887 -13.44392 -13.27660 -12.80366 -12.70951 -12.66942 -12.56092 -12.37219 -12.03300 -11.97928 -11.74296 -11.47561 -11.41933 -11.28164 -10.89541 -10.64548 -10.55021 -10.35828 -10.25679 -8.96645 -8.17866 -6.11209 -0.91929 -0.67180 0.48696 0.57259 1.38655 1.41658 1.48193 1.82111 1.88608 2.40432 2.72279 2.91287 3.06659 3.12464 3.30554 3.37581 3.49496 3.72274 4.00088 4.09091 4.15717 4.31349 4.49717 4.50608 4.56302 4.70514 4.80163 4.90060 4.95084 5.06144 5.14578 5.21659 5.26397 5.33287 5.56307 5.61765 5.74104 5.81225 5.84837 6.32377 6.37120 6.65852 6.94396 7.47133 7.74180 8.92750 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.020572 B = 0.003326 C = 0.003052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1360.748129 B = 8415.436323 C = 9172.542572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.029 3.971 3 Si 0.937 3.063 4 H -0.272 1.272 5 H -0.293 1.293 6 H -0.266 1.266 7 C -0.499 4.499 8 C 0.010 3.990 9 C -0.103 4.103 10 C 0.173 3.827 11 H 0.070 0.930 12 N -0.669 5.669 13 C 0.401 3.599 14 N -0.358 5.358 15 N -0.212 5.212 16 C 0.066 3.934 17 Cl 0.005 6.995 18 C -0.012 4.012 19 C -0.143 4.143 20 C 0.121 3.879 21 N -0.491 5.491 22 C 0.174 3.826 23 C -0.182 4.182 24 C -0.104 4.104 25 C -0.011 4.011 26 H 0.264 0.736 27 H -0.001 1.001 28 H 0.034 0.966 29 H 0.062 0.938 30 H 0.060 0.940 31 H 0.423 0.577 32 H 0.176 0.824 33 H 0.204 0.796 34 H 0.193 0.807 35 H 0.054 0.946 36 H 0.042 0.958 37 H 0.018 0.982 38 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.168 -16.821 11.384 24.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.170 4.170 3 Si 0.764 3.236 4 H -0.198 1.198 5 H -0.220 1.220 6 H -0.191 1.191 7 C -0.518 4.518 8 C -0.028 4.028 9 C -0.141 4.141 10 C 0.069 3.931 11 H 0.089 0.911 12 N -0.299 5.299 13 C 0.147 3.853 14 N -0.206 5.206 15 N -0.047 5.047 16 C -0.123 4.123 17 Cl 0.033 6.967 18 C -0.025 4.025 19 C -0.165 4.165 20 C -0.026 4.026 21 N -0.200 5.200 22 C 0.005 3.995 23 C -0.194 4.194 24 C -0.143 4.143 25 C -0.049 4.049 26 H 0.073 0.927 27 H 0.017 0.983 28 H 0.053 0.947 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.263 0.737 32 H 0.193 0.807 33 H 0.221 0.779 34 H 0.210 0.790 35 H 0.073 0.927 36 H 0.061 0.939 37 H 0.036 0.964 38 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 13.708 -16.061 10.513 23.588 hybrid contribution 0.422 0.670 0.235 0.826 sum 14.130 -15.391 10.748 23.496 Atomic orbital electron populations 1.69930 1.07401 1.27536 1.51809 1.25485 0.95270 1.01348 0.94887 0.85904 0.78418 0.79997 0.79315 1.19769 1.21973 1.19069 1.20580 0.90770 0.92036 1.48396 1.19276 0.97294 0.93185 0.93039 1.21731 0.92456 0.99185 1.00717 1.20829 0.93742 0.88368 0.90183 0.91140 1.44858 1.19252 1.44128 1.21643 1.20224 0.87799 0.87091 0.90215 1.72845 1.04215 1.24841 1.18737 1.72039 1.02692 1.02744 1.27218 1.23242 0.94297 1.01335 0.93421 1.98372 1.27114 1.77506 1.93690 1.18615 0.93227 0.96363 0.94330 1.22176 1.02857 0.98024 0.93409 1.23186 0.88678 0.94863 0.95875 1.67721 1.12277 1.07213 1.32817 1.23310 0.98403 0.91693 0.86063 1.19467 0.98459 1.02526 0.98931 1.21778 0.97650 0.95273 0.99632 1.19602 0.94991 0.95307 0.94996 0.92726 0.98253 0.94707 0.91957 0.92113 0.73703 0.80657 0.77896 0.79033 0.92693 0.93892 0.96394 0.95708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -52.93 12.74 21.45 0.27 -52.66 16 2 C 0.03 1.55 5.46 84.65 0.46 2.01 16 3 Si 0.94 43.12 26.80 68.60 1.84 44.96 16 4 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 5 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 6 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 7 C -0.50 -25.39 5.51 -16.17 -0.09 -25.48 16 8 C 0.01 0.48 5.96 30.10 0.18 0.66 16 9 C -0.10 -3.74 5.40 30.66 0.17 -3.57 16 10 C 0.17 5.96 2.38 44.96 0.11 6.07 16 11 H 0.07 2.75 7.57 -2.39 -0.02 2.73 16 12 N -0.67 -17.72 5.17 -323.45 -1.67 -19.39 16 13 C 0.40 11.42 7.59 133.80 1.02 12.44 16 14 N -0.36 -12.40 10.33 -54.49 -0.56 -12.96 16 15 N -0.21 -7.03 11.39 -49.01 -0.56 -7.59 16 16 C 0.07 1.74 7.45 85.30 0.64 2.37 16 17 Cl 0.01 0.11 28.05 -2.72 -0.08 0.03 16 18 C -0.01 -0.27 5.76 -21.28 -0.12 -0.39 16 19 C -0.14 -2.08 9.58 22.32 0.21 -1.87 16 20 C 0.12 1.52 11.07 84.16 0.93 2.45 16 21 N -0.49 -8.30 10.30 -195.75 -2.02 -10.32 16 22 C 0.17 3.09 10.82 85.12 0.92 4.01 16 23 C -0.18 -4.21 5.76 -21.23 -0.12 -4.33 16 24 C -0.10 -4.00 5.52 30.67 0.17 -3.83 16 25 C -0.01 -0.49 5.60 30.12 0.17 -0.32 16 26 H 0.26 14.42 8.31 -92.71 -0.77 13.65 16 27 H 0.00 -0.05 8.14 -2.39 -0.02 -0.06 16 28 H 0.03 1.82 7.08 -2.38 -0.02 1.80 16 29 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 30 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 31 H 0.42 8.23 6.98 -92.71 -0.65 7.58 16 32 H 0.18 1.64 7.32 -2.91 -0.02 1.62 16 33 H 0.20 0.89 8.06 -2.91 -0.02 0.87 16 34 H 0.19 2.31 6.71 -2.91 -0.02 2.29 16 35 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 36 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 37 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 38 H 0.02 1.11 5.17 -2.39 -0.01 1.10 16 Total: -1.00 -65.32 326.02 2.34 -62.98 By element: Atomic # 1 Polarization: 4.24 SS G_CDS: 0.48 Total: 4.72 kcal Atomic # 6 Polarization: -14.42 SS G_CDS: 4.64 Total: -9.78 kcal Atomic # 7 Polarization: -98.38 SS G_CDS: -4.54 Total: -102.92 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 1.84 Total: 44.96 kcal Atomic # 17 Polarization: 0.11 SS G_CDS: -0.08 Total: 0.03 kcal Total: -65.32 2.34 -62.98 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157050241.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.866 kcal (2) G-P(sol) polarization free energy of solvation -65.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.983 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds